RNA–Protein interactions for RNA: ENST00000422991.1

COL7A1-202, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 597 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-202ENST00000422991 NFKB2Q00653 900 aa16.37■□□□□ 0.21
COL7A1-202ENST00000422991 SF1Q15637 639 aaKnown RBP16.37■□□□□ 0.21
COL7A1-202ENST00000422991 FBXO48Q5FWF7 155 aa16.37■□□□□ 0.21
COL7A1-202ENST00000422991 KIAA1614Q5VZ46 1190 aa16.37■□□□□ 0.21
COL7A1-202ENST00000422991 ICE2Q659A1 982 aa16.37■□□□□ 0.21
COL7A1-202ENST00000422991 THOC6Q86W42 341 aaKnown RBP16.37■□□□□ 0.21
COL7A1-202ENST00000422991 RCBTB1Q8NDN9 531 aa16.37■□□□□ 0.21
COL7A1-202ENST00000422991 RDH11Q8TC12 318 aa16.37■□□□□ 0.21
COL7A1-202ENST00000422991 KLHL6Q8WZ60 621 aa16.37■□□□□ 0.21
COL7A1-202ENST00000422991 ESAMQ96AP7 390 aa16.37■□□□□ 0.21
COL7A1-202ENST00000422991 PKNOX2Q96KN3 472 aa16.37■□□□□ 0.21
COL7A1-202ENST00000422991 CNTNAP3BQ96NU0 1288 aa16.37■□□□□ 0.21
COL7A1-202ENST00000422991 TRAPPC9Q96Q05 1148 aa16.37■□□□□ 0.21
COL7A1-202ENST00000422991 OR4K3Q96R72 315 aa16.37■□□□□ 0.21
COL7A1-202ENST00000422991 CNTNAP3Q9BZ76 1288 aa16.37■□□□□ 0.21
COL7A1-202ENST00000422991 CD244Q9BZW8 370 aa16.37■□□□□ 0.21
COL7A1-202ENST00000422991 ACBD3Q9H3P7 528 aa16.37■□□□□ 0.21
COL7A1-202ENST00000422991 ZNF768Q9H5H4 540 aaKnown RBP16.37■□□□□ 0.21
COL7A1-202ENST00000422991 SLC6A20Q9NP91 592 aa16.37■□□□□ 0.21
COL7A1-202ENST00000422991 WASF3Q9UPY6 502 aa16.37■□□□□ 0.21
COL7A1-202ENST00000422991 SH2B3Q9UQQ2 575 aa16.37■□□□□ 0.21
COL7A1-202ENST00000422991 KLK4Q9Y5K2 254 aa16.37■□□□□ 0.21
COL7A1-202ENST00000422991 HEATR5BQ9P2D3 2071 aa16.37■□□□□ 0.21
COL7A1-202ENST00000422991 CEP295Q9C0D2 2601 aa16.37■□□□□ 0.21
COL7A1-202ENST00000422991 KIF26BQ2KJY2 2108 aa16.36■□□□□ 0.21
COL7A1-202ENST00000422991 A8MU76 341 aa16.36■□□□□ 0.21
COL7A1-202ENST00000422991 G3V2L1 256 aa16.36■□□□□ 0.21
COL7A1-202ENST00000422991 TMX2-CTNND1H3BSU7 103 aa16.36■□□□□ 0.21
COL7A1-202ENST00000422991 STX16-NPEPL1H3BU86 382 aa16.36■□□□□ 0.21
COL7A1-202ENST00000422991 DYNC1I1O14576 645 aa16.36■□□□□ 0.21
COL7A1-202ENST00000422991 STX16O14662 325 aa16.36■□□□□ 0.21
COL7A1-202ENST00000422991 PRPF4O43172 522 aaKnown RBP eCLIP16.36■□□□□ 0.21
COL7A1-202ENST00000422991 DLX3O60479 287 aa16.36■□□□□ 0.21
COL7A1-202ENST00000422991 STK16O75716 305 aa16.36■□□□□ 0.21
COL7A1-202ENST00000422991 NPPBP16860 134 aa16.36■□□□□ 0.21
COL7A1-202ENST00000422991 MAGP20916 626 aa16.36■□□□□ 0.21
COL7A1-202ENST00000422991 ATP5F1P24539 256 aaPredicted RBP16.36■□□□□ 0.21
COL7A1-202ENST00000422991 CMPK1P30085 196 aa16.36■□□□□ 0.21
COL7A1-202ENST00000422991 GDF5P43026 501 aa16.36■□□□□ 0.21
COL7A1-202ENST00000422991 MAGOHP61326 146 aaKnown RBP16.36■□□□□ 0.21
COL7A1-202ENST00000422991 YBX1P67809 324 aaKnown RBP16.36■□□□□ 0.21
COL7A1-202ENST00000422991 ABATP80404 500 aa16.36■□□□□ 0.21
COL7A1-202ENST00000422991 PRDX1Q06830 199 aaKnown RBP16.36■□□□□ 0.21
COL7A1-202ENST00000422991 C16orf72Q14CZ0 275 aa16.36■□□□□ 0.21
COL7A1-202ENST00000422991 TTMPQ5BVD1 217 aa16.36■□□□□ 0.21
COL7A1-202ENST00000422991 ZYG11AQ6WRX3 759 aa16.36■□□□□ 0.21
COL7A1-202ENST00000422991 TMPRSS7Q7RTY8 843 aa16.36■□□□□ 0.21
COL7A1-202ENST00000422991 LRRC70Q7Z2Q7 622 aa16.36■□□□□ 0.21
COL7A1-202ENST00000422991 KMT5CQ86Y97 462 aa16.36■□□□□ 0.21
COL7A1-202ENST00000422991 GALNT15Q8N3T1 639 aa16.36■□□□□ 0.21
COL7A1-202ENST00000422991 CHCHD4Q8N4Q1 142 aa16.36■□□□□ 0.21
COL7A1-202ENST00000422991 TCP10LQ8TDR4 215 aa16.36■□□□□ 0.21
COL7A1-202ENST00000422991 GRAMD1AQ96CP6 724 aa16.36■□□□□ 0.21
COL7A1-202ENST00000422991 PHF21BQ96EK2 531 aa16.36■□□□□ 0.21
COL7A1-202ENST00000422991 LIN37Q96GY3 246 aaPredicted RBP16.36■□□□□ 0.21
COL7A1-202ENST00000422991 SLC41A2Q96JW4 573 aa16.36■□□□□ 0.21
COL7A1-202ENST00000422991 ATP6V1G3Q96LB4 118 aa16.36■□□□□ 0.21
COL7A1-202ENST00000422991 FAM111AQ96PZ2 611 aa16.36■□□□□ 0.21
COL7A1-202ENST00000422991 HAUS8Q9BT25 410 aa16.36■□□□□ 0.21
COL7A1-202ENST00000422991 MRPS30Q9NP92 439 aaKnown RBP16.36■□□□□ 0.21
COL7A1-202ENST00000422991 SLC17A7Q9P2U7 560 aa16.36■□□□□ 0.21
COL7A1-202ENST00000422991 SLC22A14Q9Y267 594 aa16.36■□□□□ 0.21
COL7A1-202ENST00000422991 IGKV1-8A0A0C4DH67 115 aa16.35■□□□□ 0.21
COL7A1-202ENST00000422991 LRRC14BA6NHZ5 514 aa16.35■□□□□ 0.21
COL7A1-202ENST00000422991 SLC9B1P1A6NJY1 282 aa16.35■□□□□ 0.21
COL7A1-202ENST00000422991 HGSO14964 777 aaPredicted RBP16.35■□□□□ 0.21
COL7A1-202ENST00000422991 ZBTB11O95625 1053 aaPredicted RBP16.35■□□□□ 0.21
COL7A1-202ENST00000422991 MYL2P10916 166 aa16.35■□□□□ 0.21
COL7A1-202ENST00000422991 NELFEP18615 380 aaKnown RBP16.35■□□□□ 0.21
COL7A1-202ENST00000422991 GRIA3P42263 894 aa16.35■□□□□ 0.21
COL7A1-202ENST00000422991 CDC16Q13042 620 aa16.35■□□□□ 0.21
COL7A1-202ENST00000422991 PCBP2Q15366 365 aaKnown RBP eCLIP16.35■□□□□ 0.21
COL7A1-202ENST00000422991 METTL2BQ6P1Q9 378 aaKnown RBP16.35■□□□□ 0.21
COL7A1-202ENST00000422991 C17orf64Q86WR6 236 aa16.35■□□□□ 0.21
COL7A1-202ENST00000422991 GOLGA6L1Q8N7Z2 621 aa16.35■□□□□ 0.21
COL7A1-202ENST00000422991 C19orf47Q8N9M1 422 aaKnown RBP16.35■□□□□ 0.21
COL7A1-202ENST00000422991 ARMC2Q8NEN0 867 aa16.35■□□□□ 0.21
COL7A1-202ENST00000422991 STRADBQ9C0K7 418 aa16.35■□□□□ 0.21
COL7A1-202ENST00000422991 KLHL25Q9H0H3 589 aa16.35■□□□□ 0.21
COL7A1-202ENST00000422991 DNAJC11Q9NVH1 559 aa16.35■□□□□ 0.21
COL7A1-202ENST00000422991 CUEDC1Q9NWM3 386 aaPredicted RBP16.35■□□□□ 0.21
COL7A1-202ENST00000422991 MID2Q9UJV3 735 aa16.35■□□□□ 0.21
COL7A1-202ENST00000422991 BTRCQ9Y297 605 aa16.35■□□□□ 0.21
COL7A1-202ENST00000422991 KLHL20Q9Y2M5 609 aa16.35■□□□□ 0.21
COL7A1-202ENST00000422991 TNPO3Q9Y5L0 923 aaKnown RBP16.35■□□□□ 0.21
COL7A1-202ENST00000422991 AKAP13Q12802 2813 aa16.34■□□□□ 0.21
COL7A1-202ENST00000422991 FAM149AA5PLN7 773 aa16.34■□□□□ 0.21
COL7A1-202ENST00000422991 K7EPI3 171 aa16.34■□□□□ 0.21
COL7A1-202ENST00000422991 CCNT2O60583 730 aaKnown RBP16.34■□□□□ 0.21
COL7A1-202ENST00000422991 SIX3O95343 332 aaPredicted RBP16.34■□□□□ 0.21
COL7A1-202ENST00000422991 RPS17P08708 135 aaKnown RBP16.34■□□□□ 0.21
COL7A1-202ENST00000422991 JUPP14923 745 aa16.34■□□□□ 0.21
COL7A1-202ENST00000422991 EEF1DP29692 281 aaKnown RBP16.34■□□□□ 0.21
COL7A1-202ENST00000422991 SEPHS1P49903 392 aa16.34■□□□□ 0.21
COL7A1-202ENST00000422991 HSD11B2P80365 405 aa16.34■□□□□ 0.21
COL7A1-202ENST00000422991 TARDBPQ13148 414 aaKnown RBP eCLIP16.34■□□□□ 0.21
COL7A1-202ENST00000422991 NAA25Q14CX7 972 aa16.34■□□□□ 0.21
COL7A1-202ENST00000422991 ZIC1Q15915 447 aa16.34■□□□□ 0.21
COL7A1-202ENST00000422991 PDK4Q16654 411 aa16.34■□□□□ 0.21
COL7A1-202ENST00000422991 ZNF425Q6IV72 752 aa16.34■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms