RNA–Protein interactions for RNA: ENST00000409766.7

USP39-204, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,033 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-204ENST00000409766 PDLIM1O00151 329 aa19.49■□□□□ 0.71
USP39-204ENST00000409766 ACOX3O15254 700 aa19.49■□□□□ 0.71
USP39-204ENST00000409766 FAM58BPP0C7Q3 252 aa19.49■□□□□ 0.71
USP39-204ENST00000409766 SMIM18P0DKX4 95 aa19.49■□□□□ 0.71
USP39-204ENST00000409766 CDH1P12830 882 aa19.49■□□□□ 0.71
USP39-204ENST00000409766 ZNF8P17098 575 aaPredicted RBP19.49■□□□□ 0.71
USP39-204ENST00000409766 PTPN6P29350 595 aa19.49■□□□□ 0.71
USP39-204ENST00000409766 POLE2P56282 527 aa19.49■□□□□ 0.71
USP39-204ENST00000409766 CNTN1Q12860 1018 aa19.49■□□□□ 0.71
USP39-204ENST00000409766 CARM1Q86X55 608 aa19.49■□□□□ 0.71
USP39-204ENST00000409766 RAB7BQ96AH8 199 aa19.49■□□□□ 0.71
USP39-204ENST00000409766 C11orf24Q96F05 449 aaPredicted RBP19.49■□□□□ 0.71
USP39-204ENST00000409766 ITCHQ96J02 903 aa19.49■□□□□ 0.71
USP39-204ENST00000409766 C9orf16Q9BUW7 83 aa19.49■□□□□ 0.71
USP39-204ENST00000409766 CHID1Q9BWS9 393 aa19.49■□□□□ 0.71
USP39-204ENST00000409766 PLA2G2FQ9BZM2 168 aa19.49■□□□□ 0.71
USP39-204ENST00000409766 KAT8Q9H7Z6 458 aaKnown RBP19.49■□□□□ 0.71
USP39-204ENST00000409766 RMND5AQ9H871 391 aa19.49■□□□□ 0.71
USP39-204ENST00000409766 CDH7Q9ULB5 785 aa19.49■□□□□ 0.71
USP39-204ENST00000409766 OAZ3Q9UMX2 235 aa19.49■□□□□ 0.71
USP39-204ENST00000409766 FADS3Q9Y5Q0 445 aa19.49■□□□□ 0.71
USP39-204ENST00000409766 DLGAP1O14490 977 aa19.48■□□□□ 0.71
USP39-204ENST00000409766 LRATO95237 230 aa19.48■□□□□ 0.71
USP39-204ENST00000409766 KAT7O95251 611 aa19.48■□□□□ 0.71
USP39-204ENST00000409766 TNFAIP8O95379 198 aa19.48■□□□□ 0.71
USP39-204ENST00000409766 HSD3B1P14060 373 aa19.48■□□□□ 0.71
USP39-204ENST00000409766 PAX7P23759 505 aa19.48■□□□□ 0.71
USP39-204ENST00000409766 HSD3B2P26439 372 aa19.48■□□□□ 0.71
USP39-204ENST00000409766 CCR3P51677 355 aa19.48■□□□□ 0.71
USP39-204ENST00000409766 GTF2H3Q13889 308 aa19.48■□□□□ 0.71
USP39-204ENST00000409766 PGS1Q32NB8 556 aa19.48■□□□□ 0.71
USP39-204ENST00000409766 ATG9BQ674R7 924 aa19.48■□□□□ 0.71
USP39-204ENST00000409766 SPRED1Q7Z699 444 aa19.48■□□□□ 0.71
USP39-204ENST00000409766 TNIP2Q8NFZ5 429 aa19.48■□□□□ 0.71
USP39-204ENST00000409766 CXorf40AQ8TE69 158 aa19.48■□□□□ 0.71
USP39-204ENST00000409766 NEIL2Q969S2 332 aa19.48■□□□□ 0.71
USP39-204ENST00000409766 RNF145Q96MT1 663 aa19.48■□□□□ 0.71
USP39-204ENST00000409766 TRAPPC9Q96Q05 1148 aa19.48■□□□□ 0.71
USP39-204ENST00000409766 CDCA3Q99618 268 aaPredicted RBP19.48■□□□□ 0.71
USP39-204ENST00000409766 CENPKQ9BS16 269 aa19.48■□□□□ 0.71
USP39-204ENST00000409766 INPP5KQ9BT40 448 aa19.48■□□□□ 0.71
USP39-204ENST00000409766 EBPLQ9BY08 206 aa19.48■□□□□ 0.71
USP39-204ENST00000409766 ZNF696Q9H7X3 374 aa19.48■□□□□ 0.71
USP39-204ENST00000409766 BRF2Q9HAW0 419 aa19.48■□□□□ 0.71
USP39-204ENST00000409766 SGK2Q9HBY8 427 aa19.48■□□□□ 0.71
USP39-204ENST00000409766 GPRC5BQ9NZH0 403 aa19.48■□□□□ 0.71
USP39-204ENST00000409766 INVSQ9Y283 1065 aa19.48■□□□□ 0.71
USP39-204ENST00000409766 PCDHGA11Q9Y5H2 935 aa19.48■□□□□ 0.71
USP39-204ENST00000409766 V9GYQ6 96 aa19.48■□□□□ 0.71
USP39-204ENST00000409766 VEGFDO43915 354 aa19.47■□□□□ 0.71
USP39-204ENST00000409766 POP7O75817 140 aaKnown RBP19.47■□□□□ 0.71
USP39-204ENST00000409766 B3GALT4O96024 378 aa19.47■□□□□ 0.71
USP39-204ENST00000409766 PRPS1L1P21108 318 aa19.47■□□□□ 0.71
USP39-204ENST00000409766 MTAPQ13126 283 aa19.47■□□□□ 0.71
USP39-204ENST00000409766 DDX39BQ13838 428 aaKnown RBP19.47■□□□□ 0.71
USP39-204ENST00000409766 TMTC4Q5T4D3 741 aa19.47■□□□□ 0.71
USP39-204ENST00000409766 PIP5KL1Q5T9C9 394 aa19.47■□□□□ 0.71
USP39-204ENST00000409766 EGFLAMQ63HQ2 1017 aa19.47■□□□□ 0.71
USP39-204ENST00000409766 SLCO4C1Q6ZQN7 724 aa19.47■□□□□ 0.71
USP39-204ENST00000409766 MSANTD1Q6ZTZ1 278 aa19.47■□□□□ 0.71
USP39-204ENST00000409766 GPR180Q86V85 440 aa19.47■□□□□ 0.71
USP39-204ENST00000409766 ANKRD46Q86W74 232 aa19.47■□□□□ 0.71
USP39-204ENST00000409766 OR2L2Q8NH16 312 aa19.47■□□□□ 0.71
USP39-204ENST00000409766 METTL2AQ96IZ6 378 aaKnown RBP19.47■□□□□ 0.71
USP39-204ENST00000409766 CPPED1Q9BRF8 314 aaPredicted RBP19.47■□□□□ 0.71
USP39-204ENST00000409766 KCNE2Q9Y6J6 123 aa19.47■□□□□ 0.71
USP39-204ENST00000409766 ELOVL7A1L3X0 281 aa19.47■□□□□ 0.71
USP39-204ENST00000409766 GMNNO75496 209 aa19.47■□□□□ 0.71
USP39-204ENST00000409766 LDLRP01130 860 aa19.47■□□□□ 0.71
USP39-204ENST00000409766 MT-ND1P03886 318 aa19.47■□□□□ 0.71
USP39-204ENST00000409766 PLOD1Q02809 727 aaPredicted RBP19.47■□□□□ 0.71
USP39-204ENST00000409766 PYCR3Q53H96 274 aa19.47■□□□□ 0.71
USP39-204ENST00000409766 ISLR2Q6UXK2 745 aa19.47■□□□□ 0.71
USP39-204ENST00000409766 C11orf96Q7Z7L8 435 aa19.47■□□□□ 0.71
USP39-204ENST00000409766 PHACTR4Q8IZ21 702 aa19.47■□□□□ 0.71
USP39-204ENST00000409766 PLA2G15Q8NCC3 412 aa19.47■□□□□ 0.71
USP39-204ENST00000409766 OR7G3Q8NG95 312 aa19.47■□□□□ 0.71
USP39-204ENST00000409766 TFAP2CQ92754 450 aa19.47■□□□□ 0.71
USP39-204ENST00000409766 GFM2Q969S9 779 aaKnown RBP19.47■□□□□ 0.71
USP39-204ENST00000409766 HIC2Q96JB3 615 aa19.47■□□□□ 0.71
USP39-204ENST00000409766 PBX4Q9BYU1 374 aa19.47■□□□□ 0.71
USP39-204ENST00000409766 ANKRD60Q9BZ19 345 aa19.47■□□□□ 0.71
USP39-204ENST00000409766 DPEP2Q9H4A9 486 aa19.47■□□□□ 0.71
USP39-204ENST00000409766 C8orf4Q9NR00 106 aa19.47■□□□□ 0.71
USP39-204ENST00000409766 RUVBL1Q9Y265 456 aaKnown RBP19.47■□□□□ 0.71
USP39-204ENST00000409766 PCM1Q15154 2024 aa19.46■□□□□ 0.71
USP39-204ENST00000409766 EPOPA6NHQ4 379 aa19.46■□□□□ 0.71
USP39-204ENST00000409766 MAGEB17A8MXT2 336 aa19.46■□□□□ 0.71
USP39-204ENST00000409766 PRMT3O60678 531 aa19.46■□□□□ 0.71
USP39-204ENST00000409766 RASAL1O95294 804 aa19.46■□□□□ 0.71
USP39-204ENST00000409766 NPPBP16860 134 aa19.46■□□□□ 0.71
USP39-204ENST00000409766 ACADLP28330 430 aa19.46■□□□□ 0.71
USP39-204ENST00000409766 CDKN2CP42773 168 aa19.46■□□□□ 0.71
USP39-204ENST00000409766 HNRNPFP52597 415 aaKnown RBP19.46■□□□□ 0.71
USP39-204ENST00000409766 TBPL1P62380 186 aa19.46■□□□□ 0.71
USP39-204ENST00000409766 LIN52Q52LA3 116 aa19.46■□□□□ 0.71
USP39-204ENST00000409766 ADNP2Q6IQ32 1131 aa19.46■□□□□ 0.71
USP39-204ENST00000409766 CAPN13Q6MZZ7 669 aaPredicted RBP19.46■□□□□ 0.71
USP39-204ENST00000409766 CRTC3Q6UUV7 619 aa19.46■□□□□ 0.71
USP39-204ENST00000409766 TRMT11Q7Z4G4 463 aaKnown RBP19.46■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms