RNA–Protein interactions for RNA: ENST00000395898.3

VPS13C-204, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 11,012 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-204ENST00000395898 PEX13Q92968 403 aa5.33□□□□□ -1.56
VPS13C-204ENST00000395898 FAM210AQ96ND0 272 aa5.33□□□□□ -1.56
VPS13C-204ENST00000395898 ZNF717Q9BY31 904 aaPredicted RBP5.33□□□□□ -1.56
VPS13C-204ENST00000395898 RC3H2Q9HBD1 1191 aaKnown RBP5.33□□□□□ -1.56
VPS13C-204ENST00000395898 APOBEC3GQ9HC16 384 aaKnown RBP5.33□□□□□ -1.56
VPS13C-204ENST00000395898 ALKBH4Q9NXW9 302 aa5.33□□□□□ -1.56
VPS13C-204ENST00000395898 PTTG2Q9NZH5 202 aa5.33□□□□□ -1.56
VPS13C-204ENST00000395898 GRHL1Q9NZI5 618 aa5.33□□□□□ -1.56
VPS13C-204ENST00000395898 TRIP11Q15643 1979 aa5.33□□□□□ -1.56
VPS13C-204ENST00000395898 ZNF541Q9H0D2 1346 aa5.33□□□□□ -1.56
VPS13C-204ENST00000395898 TRBV23OR9-2A0A075B6M9 112 aa5.33□□□□□ -1.56
VPS13C-204ENST00000395898 LCHNA4D1U4 455 aa5.33□□□□□ -1.56
VPS13C-204ENST00000395898 WASHC1A8K0Z3 465 aa5.33□□□□□ -1.56
VPS13C-204ENST00000395898 WASH3PC4AMC7 463 aa5.33□□□□□ -1.56
VPS13C-204ENST00000395898 PLGP00747 810 aaPredicted RBP5.33□□□□□ -1.56
VPS13C-204ENST00000395898 POU2F1P14859 743 aa5.33□□□□□ -1.56
VPS13C-204ENST00000395898 CSNK2A2P19784 350 aaPredicted RBP5.33□□□□□ -1.56
VPS13C-204ENST00000395898 SEPHS1P49903 392 aa5.33□□□□□ -1.56
VPS13C-204ENST00000395898 FBXO48Q5FWF7 155 aa5.33□□□□□ -1.56
VPS13C-204ENST00000395898 MBLAC2Q68D91 279 aa5.33□□□□□ -1.56
VPS13C-204ENST00000395898 WASH2PQ6VEQ5 465 aa5.33□□□□□ -1.56
VPS13C-204ENST00000395898 RASGRP3Q8IV61 690 aa5.33□□□□□ -1.56
VPS13C-204ENST00000395898 CCDC107Q8WV48 283 aa5.33□□□□□ -1.56
VPS13C-204ENST00000395898 SGCDQ92629 289 aa5.33□□□□□ -1.56
VPS13C-204ENST00000395898 CD180Q99467 661 aa5.33□□□□□ -1.56
VPS13C-204ENST00000395898 PTPN18Q99952 460 aa5.33□□□□□ -1.56
VPS13C-204ENST00000395898 DERL2Q9GZP9 239 aa5.33□□□□□ -1.56
VPS13C-204ENST00000395898 SP140LQ9H930 580 aa5.33□□□□□ -1.56
VPS13C-204ENST00000395898 ZBTB26Q9HCK0 441 aa5.33□□□□□ -1.56
VPS13C-204ENST00000395898 PIGVQ9NUD9 493 aa5.33□□□□□ -1.56
VPS13C-204ENST00000395898 KDELR3O43731 214 aa5.33□□□□□ -1.56
VPS13C-204ENST00000395898 NOS1APO75052 506 aaPredicted RBP5.33□□□□□ -1.56
VPS13C-204ENST00000395898 VNN1O95497 513 aa5.33□□□□□ -1.56
VPS13C-204ENST00000395898 HLA-DQB2P05538 268 aa5.33□□□□□ -1.56
VPS13C-204ENST00000395898 CLUP10909 449 aa5.33□□□□□ -1.56
VPS13C-204ENST00000395898 OR3A3P47888 321 aa5.33□□□□□ -1.56
VPS13C-204ENST00000395898 OR3A2P47893 321 aa5.33□□□□□ -1.56
VPS13C-204ENST00000395898 MTPNP58546 118 aa5.33□□□□□ -1.56
VPS13C-204ENST00000395898 PAFAH1B3Q15102 231 aaKnown RBP5.33□□□□□ -1.56
VPS13C-204ENST00000395898 SGCBQ16585 318 aa5.33□□□□□ -1.56
VPS13C-204ENST00000395898 FIP1L1Q6UN15 594 aaKnown RBP5.33□□□□□ -1.56
VPS13C-204ENST00000395898 ANKFN1Q8N957 763 aa5.33□□□□□ -1.56
VPS13C-204ENST00000395898 KAT2AQ92830 837 aa5.33□□□□□ -1.56
VPS13C-204ENST00000395898 AKTIPQ9H8T0 292 aa5.33□□□□□ -1.56
VPS13C-204ENST00000395898 MS4A12Q9NXJ0 267 aa5.33□□□□□ -1.56
VPS13C-204ENST00000395898 FBXL12Q9NXK8 326 aa5.33□□□□□ -1.56
VPS13C-204ENST00000395898 A0A1W2PP18 115 aa5.32□□□□□ -1.56
VPS13C-204ENST00000395898 SAP18O00422 153 aaKnown RBP5.32□□□□□ -1.56
VPS13C-204ENST00000395898 PLOD2O00469 737 aa5.32□□□□□ -1.56
VPS13C-204ENST00000395898 RCBTB2O95199 551 aa5.32□□□□□ -1.56
VPS13C-204ENST00000395898 MAT2AP31153 395 aaKnown RBP5.32□□□□□ -1.56
VPS13C-204ENST00000395898 RBM34P42696 430 aaKnown RBP5.32□□□□□ -1.56
VPS13C-204ENST00000395898 APLP1P51693 650 aa5.32□□□□□ -1.56
VPS13C-204ENST00000395898 TUBA3CQ13748 450 aa5.32□□□□□ -1.56
VPS13C-204ENST00000395898 SYT16Q17RD7 645 aa5.32□□□□□ -1.56
VPS13C-204ENST00000395898 PRSS55Q6UWB4 352 aaPredicted RBP5.32□□□□□ -1.56
VPS13C-204ENST00000395898 FAM110BQ8TC76 370 aa5.32□□□□□ -1.56
VPS13C-204ENST00000395898 FBXL18Q96ME1 805 aa5.32□□□□□ -1.56
VPS13C-204ENST00000395898 POLR2J3Q9H1A7 115 aaKnown RBP5.32□□□□□ -1.56
VPS13C-204ENST00000395898 ZCCHC3Q9NUD5 404 aaKnown RBP5.32□□□□□ -1.56
VPS13C-204ENST00000395898 CIDEBQ9UHD4 219 aa5.32□□□□□ -1.56
VPS13C-204ENST00000395898 UTS2RQ9UKP6 389 aa5.32□□□□□ -1.56
VPS13C-204ENST00000395898 ACSL5Q9ULC5 683 aa5.32□□□□□ -1.56
VPS13C-204ENST00000395898 CLEC4AQ9UMR7 237 aa5.32□□□□□ -1.56
VPS13C-204ENST00000395898 SLC22A14Q9Y267 594 aa5.32□□□□□ -1.56
VPS13C-204ENST00000395898 PRKAB1Q9Y478 270 aa5.32□□□□□ -1.56
VPS13C-204ENST00000395898 PCDHGB6Q9Y5F9 930 aa5.32□□□□□ -1.56
VPS13C-204ENST00000395898 ZNF99A8MXY4 864 aaPredicted RBP5.32□□□□□ -1.56
VPS13C-204ENST00000395898 EBLN1P0CF75 366 aa5.32□□□□□ -1.56
VPS13C-204ENST00000395898 PEPDP12955 493 aa5.32□□□□□ -1.56
VPS13C-204ENST00000395898 SLC6A4P31645 630 aa5.32□□□□□ -1.56
VPS13C-204ENST00000395898 TXNL4AP83876 142 aaKnown RBP5.32□□□□□ -1.56
VPS13C-204ENST00000395898 SNTA1Q13424 505 aa5.32□□□□□ -1.56
VPS13C-204ENST00000395898 EIF5AL1Q6IS14 154 aaKnown RBP5.32□□□□□ -1.56
VPS13C-204ENST00000395898 TPRG1Q6ZUI0 275 aa5.32□□□□□ -1.56
VPS13C-204ENST00000395898 CAND1Q86VP6 1230 aaKnown RBP5.32□□□□□ -1.56
VPS13C-204ENST00000395898 OSTF1Q92882 214 aa5.32□□□□□ -1.56
VPS13C-204ENST00000395898 NKD1Q969G9 470 aa5.32□□□□□ -1.56
VPS13C-204ENST00000395898 PYURFQ96I23 114 aa5.32□□□□□ -1.56
VPS13C-204ENST00000395898 B3GALT6Q96L58 329 aa5.32□□□□□ -1.56
VPS13C-204ENST00000395898 DPYSL5Q9BPU6 564 aa5.32□□□□□ -1.56
VPS13C-204ENST00000395898 SYT17Q9BSW7 474 aa5.32□□□□□ -1.56
VPS13C-204ENST00000395898 KAT8Q9H7Z6 458 aaKnown RBP5.32□□□□□ -1.56
VPS13C-204ENST00000395898 CRTAC1Q9NQ79 661 aa5.32□□□□□ -1.56
VPS13C-204ENST00000395898 SLC2A4RGQ9NR83 387 aa5.32□□□□□ -1.56
VPS13C-204ENST00000395898 TDP1Q9NUW8 608 aa5.32□□□□□ -1.56
VPS13C-204ENST00000395898 TEX13CA0A0J9YWL9 993 aa5.32□□□□□ -1.56
VPS13C-204ENST00000395898 SCGNO76038 276 aa5.32□□□□□ -1.56
VPS13C-204ENST00000395898 ATF6P18850 670 aa5.32□□□□□ -1.56
VPS13C-204ENST00000395898 ACTR1BP42025 376 aa5.32□□□□□ -1.56
VPS13C-204ENST00000395898 ACTR1AP61163 376 aa5.32□□□□□ -1.56
VPS13C-204ENST00000395898 KHDC1Q4VXA5 237 aaKnown RBP5.32□□□□□ -1.56
VPS13C-204ENST00000395898 CDCA2Q69YH5 1023 aaPredicted RBP5.32□□□□□ -1.56
VPS13C-204ENST00000395898 TMEM214Q6NUQ4 689 aaKnown RBP5.32□□□□□ -1.56
VPS13C-204ENST00000395898 TRMT10BQ6PF06 316 aaKnown RBP5.32□□□□□ -1.56
VPS13C-204ENST00000395898 GKN2Q86XP6 184 aa5.32□□□□□ -1.56
VPS13C-204ENST00000395898 NCSTNQ92542 709 aa5.32□□□□□ -1.56
VPS13C-204ENST00000395898 CARS2Q9HA77 564 aaKnown RBP5.32□□□□□ -1.56
VPS13C-204ENST00000395898 ABCB9Q9NP78 766 aa5.32□□□□□ -1.56
VPS13C-204ENST00000395898 FAM120CQ9NX05 1096 aaKnown RBP5.32□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms