RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 COX7A2P14406 83 aa10.01□□□□□ -0.81
COL6A3-205ENST00000392004 RABIFP47224 123 aa10.01□□□□□ -0.81
COL6A3-205ENST00000392004 RPL14P50914 215 aaKnown RBP10.01□□□□□ -0.81
COL6A3-205ENST00000392004 PGDP52209 483 aa10.01□□□□□ -0.81
COL6A3-205ENST00000392004 NR1H2P55055 460 aa10.01□□□□□ -0.81
COL6A3-205ENST00000392004 VSX2P58304 361 aaPredicted RBP10.01□□□□□ -0.81
COL6A3-205ENST00000392004 ZP2Q05996 745 aa10.01□□□□□ -0.81
COL6A3-205ENST00000392004 GTF2H2Q13888 395 aa10.01□□□□□ -0.81
COL6A3-205ENST00000392004 SEMA3AQ14563 771 aa10.01□□□□□ -0.81
COL6A3-205ENST00000392004 IRAK1BP1Q5VVH5 260 aa10.01□□□□□ -0.81
COL6A3-205ENST00000392004 LIPMQ5VYY2 423 aa10.01□□□□□ -0.81
COL6A3-205ENST00000392004 GTF2H2CQ6P1K8 395 aa10.01□□□□□ -0.81
COL6A3-205ENST00000392004 ZNF438Q7Z4V0 828 aa10.01□□□□□ -0.81
COL6A3-205ENST00000392004 IL22RA1Q8N6P7 574 aa10.01□□□□□ -0.81
COL6A3-205ENST00000392004 HM13Q8TCT9 377 aa10.01□□□□□ -0.81
COL6A3-205ENST00000392004 PPP1R14BQ96C90 147 aa10.01□□□□□ -0.81
COL6A3-205ENST00000392004 SNX6Q9UNH7 406 aa10.01□□□□□ -0.81
COL6A3-205ENST00000392004 LOC285095A0A1B0GVY8 99 aa10□□□□□ -0.81
COL6A3-205ENST00000392004 FAM159BA6NKW6 160 aa10□□□□□ -0.81
COL6A3-205ENST00000392004 TRPC5OSA6NMA1 111 aa10□□□□□ -0.81
COL6A3-205ENST00000392004 NUDT14O95848 222 aa10□□□□□ -0.81
COL6A3-205ENST00000392004 CDH1P12830 882 aa10□□□□□ -0.81
COL6A3-205ENST00000392004 BCKDHBP21953 392 aa10□□□□□ -0.81
COL6A3-205ENST00000392004 MMP12P39900 470 aa10□□□□□ -0.81
COL6A3-205ENST00000392004 MLLT3P42568 568 aaPredicted RBP10□□□□□ -0.81
COL6A3-205ENST00000392004 INHBCP55103 352 aa10□□□□□ -0.81
COL6A3-205ENST00000392004 RGS1Q08116 209 aa10□□□□□ -0.81
COL6A3-205ENST00000392004 NAB1Q13506 487 aa10□□□□□ -0.81
COL6A3-205ENST00000392004 SPIDRQ14159 915 aa10□□□□□ -0.81
COL6A3-205ENST00000392004 FLOT2Q14254 428 aa10□□□□□ -0.81
COL6A3-205ENST00000392004 TGFBIQ15582 683 aa10□□□□□ -0.81
COL6A3-205ENST00000392004 PRAMEF13Q5VWM6 474 aa10□□□□□ -0.81
COL6A3-205ENST00000392004 OTULINQ96BN8 352 aa10□□□□□ -0.81
COL6A3-205ENST00000392004 CCT7Q99832 543 aa10□□□□□ -0.81
COL6A3-205ENST00000392004 WDR83Q9BRX9 315 aaKnown RBP10□□□□□ -0.81
COL6A3-205ENST00000392004 MCMBPQ9BTE3 642 aa10□□□□□ -0.81
COL6A3-205ENST00000392004 RAB26Q9ULW5 256 aa10□□□□□ -0.81
COL6A3-205ENST00000392004 PRAMEF33A0A0G2JMD5 474 aa10□□□□□ -0.81
COL6A3-205ENST00000392004 PRSS38A1L453 326 aa10□□□□□ -0.81
COL6A3-205ENST00000392004 TMEM114B3SHH9 223 aa10□□□□□ -0.81
COL6A3-205ENST00000392004 RTCAO00442 366 aaKnown RBP10□□□□□ -0.81
COL6A3-205ENST00000392004 E2F6O75461 281 aa10□□□□□ -0.81
COL6A3-205ENST00000392004 TRMUO75648 421 aaKnown RBP10□□□□□ -0.81
COL6A3-205ENST00000392004 CXCR2P25025 360 aa10□□□□□ -0.81
COL6A3-205ENST00000392004 MSX2P35548 267 aaPredicted RBP10□□□□□ -0.81
COL6A3-205ENST00000392004 CPOXP36551 454 aa10□□□□□ -0.81
COL6A3-205ENST00000392004 STX4Q12846 297 aa10□□□□□ -0.81
COL6A3-205ENST00000392004 DPPA4Q7L190 304 aa10□□□□□ -0.81
COL6A3-205ENST00000392004 MARVELD2Q8N4S9 558 aa10□□□□□ -0.81
COL6A3-205ENST00000392004 OR1E3Q8WZA6 343 aa10□□□□□ -0.81
COL6A3-205ENST00000392004 PMEPA1Q969W9 287 aa10□□□□□ -0.81
COL6A3-205ENST00000392004 LRIT1Q9P2V4 623 aa10□□□□□ -0.81
COL6A3-205ENST00000392004 TLR4O00206 839 aa10□□□□□ -0.81
COL6A3-205ENST00000392004 ERI3O43414 337 aaKnown RBP10□□□□□ -0.81
COL6A3-205ENST00000392004 NDUFB5O43674 189 aa10□□□□□ -0.81
COL6A3-205ENST00000392004 ALDOAP04075 364 aaKnown RBP10□□□□□ -0.81
COL6A3-205ENST00000392004 CISD3P0C7P0 127 aa10□□□□□ -0.81
COL6A3-205ENST00000392004 C16orf89Q6UX73 402 aa10□□□□□ -0.81
COL6A3-205ENST00000392004 ZNF781Q8N8C0 355 aa10□□□□□ -0.81
COL6A3-205ENST00000392004 DPH7Q9BTV6 452 aa10□□□□□ -0.81
COL6A3-205ENST00000392004 TCEAL2Q9H3H9 227 aaPredicted RBP10□□□□□ -0.81
COL6A3-205ENST00000392004 MAU2Q9Y6X3 613 aa10□□□□□ -0.81
COL6A3-205ENST00000392004 LOC730098B7Z3J9 87 aa9.99□□□□□ -0.81
COL6A3-205ENST00000392004 COX4I1P13073 169 aa9.99□□□□□ -0.81
COL6A3-205ENST00000392004 ZNF37AP17032 561 aaPredicted RBP9.99□□□□□ -0.81
COL6A3-205ENST00000392004 PSMB5P28074 263 aa9.99□□□□□ -0.81
COL6A3-205ENST00000392004 CCR7P32248 378 aa9.99□□□□□ -0.81
COL6A3-205ENST00000392004 ST13P50502 369 aaKnown RBP9.99□□□□□ -0.81
COL6A3-205ENST00000392004 NFYCQ13952 458 aa9.99□□□□□ -0.81
COL6A3-205ENST00000392004 TLR1Q15399 786 aa9.99□□□□□ -0.81
COL6A3-205ENST00000392004 HLA-DQA1Q5Y7H0 255 aa9.99□□□□□ -0.81
COL6A3-205ENST00000392004 KRT80Q6KB66 452 aa9.99□□□□□ -0.81
COL6A3-205ENST00000392004 SLC9B2Q86UD5 537 aa9.99□□□□□ -0.81
COL6A3-205ENST00000392004 C2CD4AQ8NCU7 369 aaPredicted RBP9.99□□□□□ -0.81
COL6A3-205ENST00000392004 MSLNLQ96KJ4 702 aa9.99□□□□□ -0.81
COL6A3-205ENST00000392004 CNPPD1Q9BV87 410 aa9.99□□□□□ -0.81
COL6A3-205ENST00000392004 BRINP2Q9C0B6 783 aa9.99□□□□□ -0.81
COL6A3-205ENST00000392004 EPS15L1Q9UBC2 864 aa9.99□□□□□ -0.81
COL6A3-205ENST00000392004 SCML1Q9UN30 329 aa9.99□□□□□ -0.81
COL6A3-205ENST00000392004 ZBTB32Q9Y2Y4 487 aaPredicted RBP9.99□□□□□ -0.81
COL6A3-205ENST00000392004 SNNO75324 88 aaPredicted RBP9.99□□□□□ -0.81
COL6A3-205ENST00000392004 RFPL1O75677 317 aa9.99□□□□□ -0.81
COL6A3-205ENST00000392004 SLC35G6P0C7Q6 338 aa9.99□□□□□ -0.81
COL6A3-205ENST00000392004 MAGP20916 626 aa9.99□□□□□ -0.81
COL6A3-205ENST00000392004 VARSP26640 1264 aaKnown RBP9.99□□□□□ -0.81
COL6A3-205ENST00000392004 EIF2DP41214 584 aaKnown RBP9.99□□□□□ -0.81
COL6A3-205ENST00000392004 SIGLEC14Q08ET2 396 aa9.99□□□□□ -0.81
COL6A3-205ENST00000392004 CCNYL2Q5T2Q4 361 aa9.99□□□□□ -0.81
COL6A3-205ENST00000392004 DENND5AQ6IQ26 1287 aa9.99□□□□□ -0.81
COL6A3-205ENST00000392004 ZFP1Q6P2D0 407 aa9.99□□□□□ -0.81
COL6A3-205ENST00000392004 ETFBKMTQ8IXQ9 262 aa9.99□□□□□ -0.81
COL6A3-205ENST00000392004 RCBTB1Q8NDN9 531 aa9.99□□□□□ -0.81
COL6A3-205ENST00000392004 GAL3ST4Q96RP7 486 aa9.99□□□□□ -0.81
COL6A3-205ENST00000392004 TMEM165Q9HC07 324 aa9.99□□□□□ -0.81
COL6A3-205ENST00000392004 FADS2P1A8MWK0 482 aa9.99□□□□□ -0.81
COL6A3-205ENST00000392004 VILLO15195 856 aa9.99□□□□□ -0.81
COL6A3-205ENST00000392004 RGS14O43566 566 aa9.99□□□□□ -0.81
COL6A3-205ENST00000392004 DENRO43583 198 aaKnown RBP9.99□□□□□ -0.81
COL6A3-205ENST00000392004 DYRK3O43781 588 aa9.99□□□□□ -0.81
COL6A3-205ENST00000392004 DLX3O60479 287 aa9.99□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms