RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 TNFRSF10DQ9UBN6 386 aa12.51□□□□□ -0.41
CCDC88C-204ENST00000389857 MALT1Q9UDY8 824 aa12.51□□□□□ -0.41
CCDC88C-204ENST00000389857 A0A0J9YVX5 310 aa12.5□□□□□ -0.41
CCDC88C-204ENST00000389857 MUSKO15146 869 aa12.5□□□□□ -0.41
CCDC88C-204ENST00000389857 PCDHGA12O60330 932 aa12.5□□□□□ -0.41
CCDC88C-204ENST00000389857 FAM76BQ5HYJ3 339 aa12.5□□□□□ -0.41
CCDC88C-204ENST00000389857 KIAA0930Q6ICG6 404 aaPredicted RBP12.5□□□□□ -0.41
CCDC88C-204ENST00000389857 UBE2J2Q8N2K1 259 aa12.5□□□□□ -0.41
CCDC88C-204ENST00000389857 OR52E4Q8NGH9 312 aa12.5□□□□□ -0.41
CCDC88C-204ENST00000389857 OR4C15Q8NGM1 316 aa12.5□□□□□ -0.41
CCDC88C-204ENST00000389857 C11orf84Q9BUA3 381 aaPredicted RBP12.5□□□□□ -0.41
CCDC88C-204ENST00000389857 DPEP3Q9H4B8 488 aa12.5□□□□□ -0.41
CCDC88C-204ENST00000389857 CD320Q9NPF0 282 aa12.5□□□□□ -0.41
CCDC88C-204ENST00000389857 VPS29Q9UBQ0 182 aa12.5□□□□□ -0.41
CCDC88C-204ENST00000389857 FETUBQ9UGM5 382 aa12.5□□□□□ -0.41
CCDC88C-204ENST00000389857 NR2E1Q9Y466 385 aa12.5□□□□□ -0.41
CCDC88C-204ENST00000389857 ASB3Q9Y575 518 aa12.5□□□□□ -0.41
CCDC88C-204ENST00000389857 ACOX3O15254 700 aa12.5□□□□□ -0.41
CCDC88C-204ENST00000389857 OR12D2P58182 307 aa12.5□□□□□ -0.41
CCDC88C-204ENST00000389857 EFR3AQ14156 821 aa12.5□□□□□ -0.41
CCDC88C-204ENST00000389857 MAD2L1BPQ15013 274 aaPredicted RBP12.5□□□□□ -0.41
CCDC88C-204ENST00000389857 GPR68Q15743 365 aa12.5□□□□□ -0.41
CCDC88C-204ENST00000389857 OR4K17Q8NGC6 315 aa12.5□□□□□ -0.41
CCDC88C-204ENST00000389857 NR4A3Q92570 626 aa12.5□□□□□ -0.41
CCDC88C-204ENST00000389857 COQ10BQ9H8M1 238 aa12.5□□□□□ -0.41
CCDC88C-204ENST00000389857 TRIM36Q9NQ86 728 aa12.5□□□□□ -0.41
CCDC88C-204ENST00000389857 CENPMQ9NSP4 180 aa12.5□□□□□ -0.41
CCDC88C-204ENST00000389857 COL5A2P05997 1499 aaPredicted RBP12.5□□□□□ -0.41
CCDC88C-204ENST00000389857 PXDNQ92626 1479 aa12.5□□□□□ -0.41
CCDC88C-204ENST00000389857 SH3D21A4FU49 640 aa12.5□□□□□ -0.41
CCDC88C-204ENST00000389857 MATN2O00339 956 aa12.5□□□□□ -0.41
CCDC88C-204ENST00000389857 C8AP07357 584 aa12.5□□□□□ -0.41
CCDC88C-204ENST00000389857 CSKP41240 450 aa12.5□□□□□ -0.41
CCDC88C-204ENST00000389857 PRAMEF14Q5SWL7 426 aa12.5□□□□□ -0.41
CCDC88C-204ENST00000389857 PRAMEF13Q5VWM6 474 aa12.5□□□□□ -0.41
CCDC88C-204ENST00000389857 TOMM5Q8N4H5 51 aa12.5□□□□□ -0.41
CCDC88C-204ENST00000389857 ZNF599Q96NL3 588 aa12.5□□□□□ -0.41
CCDC88C-204ENST00000389857 TMEM209Q96SK2 561 aa12.5□□□□□ -0.41
CCDC88C-204ENST00000389857 CYP2S1Q96SQ9 504 aa12.5□□□□□ -0.41
CCDC88C-204ENST00000389857 MTMR10Q9NXD2 777 aa12.5□□□□□ -0.41
CCDC88C-204ENST00000389857 KLRF1Q9NZS2 232 aa12.5□□□□□ -0.41
CCDC88C-204ENST00000389857 ITGA5P08648 1049 aa12.5□□□□□ -0.41
CCDC88C-204ENST00000389857 JAM2P57087 298 aa12.5□□□□□ -0.41
CCDC88C-204ENST00000389857 DEFA5Q01523 94 aa12.5□□□□□ -0.41
CCDC88C-204ENST00000389857 CD47Q08722 323 aa12.5□□□□□ -0.41
CCDC88C-204ENST00000389857 RHEBQ15382 184 aa12.5□□□□□ -0.41
CCDC88C-204ENST00000389857 RNF220Q5VTB9 566 aa12.5□□□□□ -0.41
CCDC88C-204ENST00000389857 ORAI3Q9BRQ5 295 aa12.5□□□□□ -0.41
CCDC88C-204ENST00000389857 CCM2Q9BSQ5 444 aa12.5□□□□□ -0.41
CCDC88C-204ENST00000389857 CNTN3Q9P232 1028 aa12.5□□□□□ -0.41
CCDC88C-204ENST00000389857 FZD4Q9ULV1 537 aa12.5□□□□□ -0.41
CCDC88C-204ENST00000389857 KCNJ5P48544 419 aa12.5□□□□□ -0.41
CCDC88C-204ENST00000389857 GHRHRQ02643 423 aa12.5□□□□□ -0.41
CCDC88C-204ENST00000389857 CARTPTQ16568 116 aa12.5□□□□□ -0.41
CCDC88C-204ENST00000389857 WSCD2Q2TBF2 565 aa12.5□□□□□ -0.41
CCDC88C-204ENST00000389857 TPGS2Q68CL5 300 aa12.5□□□□□ -0.41
CCDC88C-204ENST00000389857 C1orf127Q8N9H9 656 aa12.5□□□□□ -0.41
CCDC88C-204ENST00000389857 KREMEN2Q8NCW0 462 aa12.5□□□□□ -0.41
CCDC88C-204ENST00000389857 TAMM41Q96BW9 452 aa12.5□□□□□ -0.41
CCDC88C-204ENST00000389857 ADAP2Q9NPF8 381 aa12.5□□□□□ -0.41
CCDC88C-204ENST00000389857 MAFBQ9Y5Q3 323 aaPredicted RBP12.5□□□□□ -0.41
CCDC88C-204ENST00000389857 B4DGG1 531 aa12.5□□□□□ -0.41
CCDC88C-204ENST00000389857 H3BUI4 141 aa12.5□□□□□ -0.41
CCDC88C-204ENST00000389857 PEX12O00623 359 aa12.5□□□□□ -0.41
CCDC88C-204ENST00000389857 KDM4BO94953 1096 aa12.5□□□□□ -0.41
CCDC88C-204ENST00000389857 SLBPQ14493 270 aaKnown RBP eCLIP12.5□□□□□ -0.41
CCDC88C-204ENST00000389857 FASTKD3Q14CZ7 662 aaKnown RBP12.5□□□□□ -0.41
CCDC88C-204ENST00000389857 TMEM214Q6NUQ4 689 aaKnown RBP12.5□□□□□ -0.41
CCDC88C-204ENST00000389857 PYROXD2Q8N2H3 581 aa12.5□□□□□ -0.41
CCDC88C-204ENST00000389857 GALNT15Q8N3T1 639 aa12.5□□□□□ -0.41
CCDC88C-204ENST00000389857 LNX2Q8N448 690 aa12.5□□□□□ -0.41
CCDC88C-204ENST00000389857 DENND6BQ8NEG7 585 aa12.5□□□□□ -0.41
CCDC88C-204ENST00000389857 KCNC2Q96PR1 638 aa12.5□□□□□ -0.41
CCDC88C-204ENST00000389857 DPAGT1Q9H3H5 408 aa12.5□□□□□ -0.41
CCDC88C-204ENST00000389857 C19orf25Q9UFG5 118 aaPredicted RBP12.5□□□□□ -0.41
CCDC88C-204ENST00000389857 ATRNO75882 1429 aa12.49□□□□□ -0.41
CCDC88C-204ENST00000389857 H6PDO95479 791 aa12.49□□□□□ -0.41
CCDC88C-204ENST00000389857 CST3P01034 146 aaPredicted RBP12.49□□□□□ -0.41
CCDC88C-204ENST00000389857 PEX2P28328 305 aa12.49□□□□□ -0.41
CCDC88C-204ENST00000389857 DAOAP59103 153 aa12.49□□□□□ -0.41
CCDC88C-204ENST00000389857 LILRA4P59901 499 aa12.49□□□□□ -0.41
CCDC88C-204ENST00000389857 S100A10P60903 97 aa12.49□□□□□ -0.41
CCDC88C-204ENST00000389857 GRIK5Q16478 980 aa12.49□□□□□ -0.41
CCDC88C-204ENST00000389857 PHF19Q5T6S3 580 aa12.49□□□□□ -0.41
CCDC88C-204ENST00000389857 TATDN1Q6P1N9 297 aa12.49□□□□□ -0.41
CCDC88C-204ENST00000389857 EFCAB11Q9BUY7 163 aa12.49□□□□□ -0.41
CCDC88C-204ENST00000389857 TMEM121BQ9BXQ6 578 aaPredicted RBP12.49□□□□□ -0.41
CCDC88C-204ENST00000389857 TMED5Q9Y3A6 229 aa12.49□□□□□ -0.41
CCDC88C-204ENST00000389857 M0R036 132 aa12.49□□□□□ -0.41
CCDC88C-204ENST00000389857 CFIP05156 583 aa12.49□□□□□ -0.41
CCDC88C-204ENST00000389857 ZBTB48P10074 688 aaPredicted RBP12.49□□□□□ -0.41
CCDC88C-204ENST00000389857 EPCAMP16422 314 aa12.49□□□□□ -0.41
CCDC88C-204ENST00000389857 CD36P16671 472 aa12.49□□□□□ -0.41
CCDC88C-204ENST00000389857 ARSIQ5FYB1 569 aa12.49□□□□□ -0.41
CCDC88C-204ENST00000389857 OGFRL1Q5TC84 451 aaPredicted RBP12.49□□□□□ -0.41
CCDC88C-204ENST00000389857 C12orf40Q86WS4 652 aa12.49□□□□□ -0.41
CCDC88C-204ENST00000389857 KLRG1Q96E93 195 aa12.49□□□□□ -0.41
CCDC88C-204ENST00000389857 BORCS8Q96FH0 119 aa12.49□□□□□ -0.41
CCDC88C-204ENST00000389857 RPL10LQ96L21 214 aaKnown RBP12.49□□□□□ -0.41
CCDC88C-204ENST00000389857 CARS2Q9HA77 564 aaKnown RBP12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms