RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 KCTD21Q4G0X4 260 aa20.91■□□□□ 0.94
TRIM54-202ENST00000380075 SYTL3Q4VX76 610 aa20.91■□□□□ 0.94
TRIM54-202ENST00000380075 GJD3Q8N144 294 aa20.91■□□□□ 0.94
TRIM54-202ENST00000380075 KRTCAP2Q8N6L1 136 aa20.91■□□□□ 0.94
TRIM54-202ENST00000380075 BEND7Q8N7W2 519 aaPredicted RBP20.91■□□□□ 0.94
TRIM54-202ENST00000380075 NXPE3Q969Y0 559 aa20.91■□□□□ 0.94
TRIM54-202ENST00000380075 TMEM159Q96B96 161 aa20.91■□□□□ 0.94
TRIM54-202ENST00000380075 FCRL1Q96LA6 429 aa20.91■□□□□ 0.94
TRIM54-202ENST00000380075 CCDC138Q96M89 665 aa20.91■□□□□ 0.94
TRIM54-202ENST00000380075 SEPHS2Q99611 448 aa20.91■□□□□ 0.94
TRIM54-202ENST00000380075 CLK4Q9HAZ1 481 aaKnown RBP20.91■□□□□ 0.94
TRIM54-202ENST00000380075 H0Y858 1186 aa20.9■□□□□ 0.94
TRIM54-202ENST00000380075 PRMT3O60678 531 aa20.9■□□□□ 0.94
TRIM54-202ENST00000380075 PRSS23O95084 383 aa20.9■□□□□ 0.94
TRIM54-202ENST00000380075 ADH1CP00326 375 aa20.9■□□□□ 0.94
TRIM54-202ENST00000380075 CATP04040 527 aaKnown RBP20.9■□□□□ 0.94
TRIM54-202ENST00000380075 ELFN1P0C7U0 828 aa20.9■□□□□ 0.94
TRIM54-202ENST00000380075 ATP6V1B1P15313 513 aa20.9■□□□□ 0.94
TRIM54-202ENST00000380075 HALP42357 657 aa20.9■□□□□ 0.94
TRIM54-202ENST00000380075 PFN3P60673 137 aa20.9■□□□□ 0.94
TRIM54-202ENST00000380075 PCDH1Q08174 1060 aa20.9■□□□□ 0.94
TRIM54-202ENST00000380075 CHIT1Q13231 466 aa20.9■□□□□ 0.94
TRIM54-202ENST00000380075 DPY19L1Q2PZI1 675 aa20.9■□□□□ 0.94
TRIM54-202ENST00000380075 NADK2Q4G0N4 442 aa20.9■□□□□ 0.94
TRIM54-202ENST00000380075 LIPIQ6XZB0 460 aa20.9■□□□□ 0.94
TRIM54-202ENST00000380075 TMEM132CQ8N3T6 1108 aa20.9■□□□□ 0.94
TRIM54-202ENST00000380075 ZFYVE19Q96K21 471 aa20.9■□□□□ 0.94
TRIM54-202ENST00000380075 TRIM4Q9C037 500 aa20.9■□□□□ 0.94
TRIM54-202ENST00000380075 EPHX3Q9H6B9 360 aa20.9■□□□□ 0.94
TRIM54-202ENST00000380075 VCX3AQ9NNX9 186 aa20.9■□□□□ 0.94
TRIM54-202ENST00000380075 SMPD3Q9NY59 655 aaPredicted RBP20.9■□□□□ 0.94
TRIM54-202ENST00000380075 SLC25A37Q9NYZ2 338 aa20.9■□□□□ 0.94
TRIM54-202ENST00000380075 ELOVL7A1L3X0 281 aa20.9■□□□□ 0.94
TRIM54-202ENST00000380075 FAM220BPB1ANY3 271 aa20.9■□□□□ 0.94
TRIM54-202ENST00000380075 EI24O14681 340 aa20.9■□□□□ 0.94
TRIM54-202ENST00000380075 CYP17A1P05093 508 aa20.9■□□□□ 0.94
TRIM54-202ENST00000380075 ZNF23P17027 643 aa20.9■□□□□ 0.94
TRIM54-202ENST00000380075 AMD1P17707 334 aa20.9■□□□□ 0.94
TRIM54-202ENST00000380075 RPS9P46781 194 aaKnown RBP20.9■□□□□ 0.94
TRIM54-202ENST00000380075 FCHO2Q0JRZ9 810 aa20.9■□□□□ 0.94
TRIM54-202ENST00000380075 MSRB3Q8IXL7 192 aa20.9■□□□□ 0.94
TRIM54-202ENST00000380075 FAM47BQ8NA70 645 aa20.9■□□□□ 0.94
TRIM54-202ENST00000380075 OR10A6Q8NH74 314 aa20.9■□□□□ 0.94
TRIM54-202ENST00000380075 NUDT8Q8WV74 236 aa20.9■□□□□ 0.94
TRIM54-202ENST00000380075 PYCR2Q96C36 320 aa20.9■□□□□ 0.94
TRIM54-202ENST00000380075 CCM2Q9BSQ5 444 aa20.9■□□□□ 0.94
TRIM54-202ENST00000380075 GRIP2Q9C0E4 1043 aa20.9■□□□□ 0.94
TRIM54-202ENST00000380075 PAIP1Q9H074 479 aaKnown RBP20.9■□□□□ 0.94
TRIM54-202ENST00000380075 TUBA8Q9NY65 449 aaPredicted RBP20.9■□□□□ 0.94
TRIM54-202ENST00000380075 DMTF1Q9Y222 760 aa20.9■□□□□ 0.94
TRIM54-202ENST00000380075 DLGAP4Q9Y2H0 992 aa20.9■□□□□ 0.94
TRIM54-202ENST00000380075 PRNPP04156 253 aa20.89■□□□□ 0.93
TRIM54-202ENST00000380075 IRF8Q02556 426 aa20.89■□□□□ 0.93
TRIM54-202ENST00000380075 CYP2U1Q7Z449 544 aa20.89■□□□□ 0.93
TRIM54-202ENST00000380075 METTL25Q8N6Q8 603 aa20.89■□□□□ 0.93
TRIM54-202ENST00000380075 AP2M1Q96CW1 435 aa20.89■□□□□ 0.93
TRIM54-202ENST00000380075 HHIPQ96QV1 700 aa20.89■□□□□ 0.93
TRIM54-202ENST00000380075 TRMT61BQ9BVS5 477 aaKnown RBP20.89■□□□□ 0.93
TRIM54-202ENST00000380075 KAT8Q9H7Z6 458 aaKnown RBP20.89■□□□□ 0.93
TRIM54-202ENST00000380075 SLC24A3Q9HC58 644 aa20.89■□□□□ 0.93
TRIM54-202ENST00000380075 INVSQ9Y283 1065 aa20.89■□□□□ 0.93
TRIM54-202ENST00000380075 NUP210Q8TEM1 1887 aaPredicted RBP20.89■□□□□ 0.93
TRIM54-202ENST00000380075 SLC5A10A0PJK1 596 aa20.88■□□□□ 0.93
TRIM54-202ENST00000380075 OR2AG2A6NM03 316 aa20.88■□□□□ 0.93
TRIM54-202ENST00000380075 ARHGEF33A8MVX0 844 aa20.88■□□□□ 0.93
TRIM54-202ENST00000380075 WNT9AO14904 365 aa20.88■□□□□ 0.93
TRIM54-202ENST00000380075 RETP07949 1114 aa20.88■□□□□ 0.93
TRIM54-202ENST00000380075 HSD3B1P14060 373 aa20.88■□□□□ 0.93
TRIM54-202ENST00000380075 SDC1P18827 310 aa20.88■□□□□ 0.93
TRIM54-202ENST00000380075 ITPKAP23677 461 aa20.88■□□□□ 0.93
TRIM54-202ENST00000380075 HSD3B2P26439 372 aa20.88■□□□□ 0.93
TRIM54-202ENST00000380075 SOX11P35716 441 aa20.88■□□□□ 0.93
TRIM54-202ENST00000380075 CAPGP40121 348 aa20.88■□□□□ 0.93
TRIM54-202ENST00000380075 CCR3P51677 355 aa20.88■□□□□ 0.93
TRIM54-202ENST00000380075 PLIN5Q00G26 463 aa20.88■□□□□ 0.93
TRIM54-202ENST00000380075 YAF2Q8IY57 180 aa20.88■□□□□ 0.93
TRIM54-202ENST00000380075 MICU2Q8IYU8 434 aa20.88■□□□□ 0.93
TRIM54-202ENST00000380075 ALDH16A1Q8IZ83 802 aa20.88■□□□□ 0.93
TRIM54-202ENST00000380075 DHRSXQ8N5I4 330 aa20.88■□□□□ 0.93
TRIM54-202ENST00000380075 RASGEF1AQ8N9B8 481 aa20.88■□□□□ 0.93
TRIM54-202ENST00000380075 VPS50Q96JG6 964 aa20.88■□□□□ 0.93
TRIM54-202ENST00000380075 FOPNLQ96NB1 174 aa20.88■□□□□ 0.93
TRIM54-202ENST00000380075 CAAP1Q9H8G2 361 aa20.88■□□□□ 0.93
TRIM54-202ENST00000380075 ZFC3H1O60293 1989 aaKnown RBP20.88■□□□□ 0.93
TRIM54-202ENST00000380075 TRIOO75962 3097 aa20.88■□□□□ 0.93
TRIM54-202ENST00000380075 TSPAN6O43657 245 aa20.88■□□□□ 0.93
TRIM54-202ENST00000380075 NARSO43776 548 aaKnown RBP20.88■□□□□ 0.93
TRIM54-202ENST00000380075 IL1RNP18510 177 aa20.88■□□□□ 0.93
TRIM54-202ENST00000380075 PRPS1L1P21108 318 aa20.88■□□□□ 0.93
TRIM54-202ENST00000380075 GDI1P31150 447 aa20.88■□□□□ 0.93
TRIM54-202ENST00000380075 HNF4AP41235 474 aa20.88■□□□□ 0.93
TRIM54-202ENST00000380075 ACOX1Q15067 660 aa20.88■□□□□ 0.93
TRIM54-202ENST00000380075 PARS2Q7L3T8 475 aaKnown RBP20.88■□□□□ 0.93
TRIM54-202ENST00000380075 THOC6Q86W42 341 aaKnown RBP20.88■□□□□ 0.93
TRIM54-202ENST00000380075 CALHM3Q86XJ0 350 aa20.88■□□□□ 0.93
TRIM54-202ENST00000380075 STARD8Q92502 1023 aa20.88■□□□□ 0.93
TRIM54-202ENST00000380075 FIG4Q92562 907 aa20.88■□□□□ 0.93
TRIM54-202ENST00000380075 CPPED1Q9BRF8 314 aaPredicted RBP20.88■□□□□ 0.93
TRIM54-202ENST00000380075 ATG10Q9H0Y0 220 aa20.88■□□□□ 0.93
TRIM54-202ENST00000380075 RBM38Q9H0Z9 239 aaKnown RBP20.88■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms