RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 ACPTQ9BZG2 426 aa20.57■□□□□ 0.88
UPF3A-202ENST00000375299 SIRT5Q9NXA8 310 aa20.57■□□□□ 0.88
UPF3A-202ENST00000375299 NOX1Q9Y5S8 564 aa20.57■□□□□ 0.88
UPF3A-202ENST00000375299 SCN10AQ9Y5Y9 1956 aa20.57■□□□□ 0.88
UPF3A-202ENST00000375299 HAT1O14929 419 aa20.56■□□□□ 0.88
UPF3A-202ENST00000375299 TLR5O60602 858 aa20.56■□□□□ 0.88
UPF3A-202ENST00000375299 OAZ2O95190 189 aa20.56■□□□□ 0.88
UPF3A-202ENST00000375299 TRPC1P48995 793 aa20.56■□□□□ 0.88
UPF3A-202ENST00000375299 ELP6Q0PNE2 266 aa20.56■□□□□ 0.88
UPF3A-202ENST00000375299 TIGD6Q17RP2 521 aa20.56■□□□□ 0.88
UPF3A-202ENST00000375299 VTCN1Q7Z7D3 282 aa20.56■□□□□ 0.88
UPF3A-202ENST00000375299 P3H2Q8IVL5 708 aa20.56■□□□□ 0.88
UPF3A-202ENST00000375299 SLC29A3Q9BZD2 475 aa20.56■□□□□ 0.88
UPF3A-202ENST00000375299 REEP1Q9H902 201 aa20.56■□□□□ 0.88
UPF3A-202ENST00000375299 NEK6Q9HC98 313 aa20.56■□□□□ 0.88
UPF3A-202ENST00000375299 THUMPD1Q9NXG2 353 aaKnown RBP20.56■□□□□ 0.88
UPF3A-202ENST00000375299 PPT2Q9UMR5 302 aa20.56■□□□□ 0.88
UPF3A-202ENST00000375299 TMEM98Q9Y2Y6 226 aa20.56■□□□□ 0.88
UPF3A-202ENST00000375299 ZFP37Q9Y6Q3 630 aaPredicted RBP20.56■□□□□ 0.88
UPF3A-202ENST00000375299 EVPLLA8MZ36 301 aa20.56■□□□□ 0.88
UPF3A-202ENST00000375299 RFXANKO14593 260 aa20.56■□□□□ 0.88
UPF3A-202ENST00000375299 CELF2O95319 508 aaKnown RBP20.56■□□□□ 0.88
UPF3A-202ENST00000375299 PRPS2P11908 318 aa20.56■□□□□ 0.88
UPF3A-202ENST00000375299 EPB42P16452 691 aa20.56■□□□□ 0.88
UPF3A-202ENST00000375299 S100A5P33763 92 aa20.56■□□□□ 0.88
UPF3A-202ENST00000375299 KCNQ1P51787 676 aa20.56■□□□□ 0.88
UPF3A-202ENST00000375299 CAMK2GQ13555 558 aaPredicted RBP20.56■□□□□ 0.88
UPF3A-202ENST00000375299 C17orf50Q8WW18 174 aa20.56■□□□□ 0.88
UPF3A-202ENST00000375299 TSSK3Q96PN8 268 aa20.56■□□□□ 0.88
UPF3A-202ENST00000375299 CDADC1Q9BWV3 514 aa20.56■□□□□ 0.88
UPF3A-202ENST00000375299 CLPBQ9H078 707 aa20.56■□□□□ 0.88
UPF3A-202ENST00000375299 TP63Q9H3D4 680 aaPredicted RBP20.56■□□□□ 0.88
UPF3A-202ENST00000375299 CCDC59Q9P031 241 aaKnown RBP20.56■□□□□ 0.88
UPF3A-202ENST00000375299 FKBP9O95302 570 aa20.55■□□□□ 0.88
UPF3A-202ENST00000375299 MAGP20916 626 aa20.55■□□□□ 0.88
UPF3A-202ENST00000375299 ITGA1P56199 1179 aa20.55■□□□□ 0.88
UPF3A-202ENST00000375299 ZCCHC8Q6NZY4 707 aaKnown RBP20.55■□□□□ 0.88
UPF3A-202ENST00000375299 CCBE1Q6UXH8 406 aaPredicted RBP20.55■□□□□ 0.88
UPF3A-202ENST00000375299 SLC46A3Q7Z3Q1 461 aa20.55■□□□□ 0.88
UPF3A-202ENST00000375299 GALNT10Q86SR1 603 aa20.55■□□□□ 0.88
UPF3A-202ENST00000375299 SYTL1Q8IYJ3 562 aa20.55■□□□□ 0.88
UPF3A-202ENST00000375299 BEND7Q8N7W2 519 aaPredicted RBP20.55■□□□□ 0.88
UPF3A-202ENST00000375299 ATL1Q8WXF7 558 aa20.55■□□□□ 0.88
UPF3A-202ENST00000375299 HSH2DQ96JZ2 352 aa20.55■□□□□ 0.88
UPF3A-202ENST00000375299 MIR1-1HGQ9H1L0 117 aa20.55■□□□□ 0.88
UPF3A-202ENST00000375299 IL17CQ9P0M4 197 aa20.55■□□□□ 0.88
UPF3A-202ENST00000375299 PCDHGA6Q9Y5G7 932 aa20.55■□□□□ 0.88
UPF3A-202ENST00000375299 CEP350Q5VT06 3117 aa20.55■□□□□ 0.88
UPF3A-202ENST00000375299 ARHGEF15O94989 841 aa20.54■□□□□ 0.88
UPF3A-202ENST00000375299 KRT6AP02538 564 aa20.54■□□□□ 0.88
UPF3A-202ENST00000375299 KRT6BP04259 564 aa20.54■□□□□ 0.88
UPF3A-202ENST00000375299 RPLP0P05388 317 aaKnown RBP20.54■□□□□ 0.88
UPF3A-202ENST00000375299 ZNF7P17097 686 aaPredicted RBP20.54■□□□□ 0.88
UPF3A-202ENST00000375299 ALOX12P18054 663 aa20.54■□□□□ 0.88
UPF3A-202ENST00000375299 DGKAP23743 735 aa20.54■□□□□ 0.88
UPF3A-202ENST00000375299 THPOP40225 353 aa20.54■□□□□ 0.88
UPF3A-202ENST00000375299 MAGEA11P43364 429 aa20.54■□□□□ 0.88
UPF3A-202ENST00000375299 KRT6CP48668 564 aa20.54■□□□□ 0.88
UPF3A-202ENST00000375299 CDH4P55283 916 aa20.54■□□□□ 0.88
UPF3A-202ENST00000375299 KRR1Q13601 381 aaKnown RBP20.54■□□□□ 0.88
UPF3A-202ENST00000375299 DSC3Q14574 896 aa20.54■□□□□ 0.88
UPF3A-202ENST00000375299 VMACQ2NL98 169 aa20.54■□□□□ 0.88
UPF3A-202ENST00000375299 CERS6Q6ZMG9 384 aa20.54■□□□□ 0.88
UPF3A-202ENST00000375299 NANOGNBQ7Z5D8 188 aa20.54■□□□□ 0.88
UPF3A-202ENST00000375299 CCDC103Q8IW40 242 aa20.54■□□□□ 0.88
UPF3A-202ENST00000375299 ZZZ3Q8IYH5 903 aa20.54■□□□□ 0.88
UPF3A-202ENST00000375299 KBTBD8Q8NFY9 601 aa20.54■□□□□ 0.88
UPF3A-202ENST00000375299 TESCQ96BS2 214 aa20.54■□□□□ 0.88
UPF3A-202ENST00000375299 HRASLS5Q96KN8 279 aa20.54■□□□□ 0.88
UPF3A-202ENST00000375299 CCSER2Q9H7U1 834 aa20.54■□□□□ 0.88
UPF3A-202ENST00000375299 PRDM8Q9NQV8 689 aa20.54■□□□□ 0.88
UPF3A-202ENST00000375299 PSORS1C1Q9UIG5 152 aa20.54■□□□□ 0.88
UPF3A-202ENST00000375299 B4GALT3O60512 393 aa20.54■□□□□ 0.88
UPF3A-202ENST00000375299 PDYNP01213 254 aa20.54■□□□□ 0.88
UPF3A-202ENST00000375299 RPS3P23396 243 aaKnown RBP eCLIP20.54■□□□□ 0.88
UPF3A-202ENST00000375299 C21orf33P30042 268 aaPredicted RBP20.54■□□□□ 0.88
UPF3A-202ENST00000375299 KDELR2P33947 212 aa20.54■□□□□ 0.88
UPF3A-202ENST00000375299 TAF1CQ15572 869 aaPredicted RBP20.54■□□□□ 0.88
UPF3A-202ENST00000375299 SLX4IPQ5VYV7 408 aa20.54■□□□□ 0.88
UPF3A-202ENST00000375299 FAM9CQ8IZT9 166 aa20.54■□□□□ 0.88
UPF3A-202ENST00000375299 ATAD1Q8NBU5 361 aa20.54■□□□□ 0.88
UPF3A-202ENST00000375299 NELL1Q92832 810 aa20.54■□□□□ 0.88
UPF3A-202ENST00000375299 ADAM2Q99965 735 aa20.54■□□□□ 0.88
UPF3A-202ENST00000375299 H3BNC9 293 aa20.53■□□□□ 0.88
UPF3A-202ENST00000375299 MED26O95402 600 aa20.53■□□□□ 0.88
UPF3A-202ENST00000375299 C9P02748 559 aa20.53■□□□□ 0.88
UPF3A-202ENST00000375299 TACR1P25103 407 aa20.53■□□□□ 0.88
UPF3A-202ENST00000375299 GRK5P34947 590 aa20.53■□□□□ 0.88
UPF3A-202ENST00000375299 DDX59Q5T1V6 619 aaKnown RBP eCLIP20.53■□□□□ 0.88
UPF3A-202ENST00000375299 METTL2BQ6P1Q9 378 aaKnown RBP20.53■□□□□ 0.88
UPF3A-202ENST00000375299 CBLL1Q75N03 491 aa20.53■□□□□ 0.88
UPF3A-202ENST00000375299 EIF3MQ7L2H7 374 aaKnown RBP20.53■□□□□ 0.88
UPF3A-202ENST00000375299 SAPCD2Q86UD0 394 aa20.53■□□□□ 0.88
UPF3A-202ENST00000375299 SERPINA9Q86WD7 417 aa20.53■□□□□ 0.88
UPF3A-202ENST00000375299 HEATR4Q86WZ0 1026 aa20.53■□□□□ 0.88
UPF3A-202ENST00000375299 BOCQ9BWV1 1114 aa20.53■□□□□ 0.88
UPF3A-202ENST00000375299 GABARAPL3Q9BY60 117 aa20.53■□□□□ 0.88
UPF3A-202ENST00000375299 ACSL4O60488 711 aa20.53■□□□□ 0.88
UPF3A-202ENST00000375299 CLDN9O95484 217 aa20.53■□□□□ 0.88
UPF3A-202ENST00000375299 C1QCP02747 245 aa20.53■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms