RNA–Protein interactions for RNA: ENST00000374730.2

USP48-202, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 570 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-202ENST00000374730 FBXO44Q9H4M3 255 aa4.74□□□□□ -1.65
USP48-202ENST00000374730 NMUR1Q9HB89 426 aa4.74□□□□□ -1.65
USP48-202ENST00000374730 CHRAC1Q9NRG0 131 aa4.74□□□□□ -1.65
USP48-202ENST00000374730 DUSP22Q9NRW4 184 aa4.74□□□□□ -1.65
USP48-202ENST00000374730 VPS45Q9NRW7 570 aa4.74□□□□□ -1.65
USP48-202ENST00000374730 TREX1Q9NSU2 369 aa4.74□□□□□ -1.65
USP48-202ENST00000374730 TMEM248Q9NWD8 314 aa4.74□□□□□ -1.65
USP48-202ENST00000374730 COMMD8Q9NX08 183 aa4.74□□□□□ -1.65
USP48-202ENST00000374730 CLIC5Q9NZA1 410 aa4.74□□□□□ -1.65
USP48-202ENST00000374730 IL37Q9NZH6 218 aa4.74□□□□□ -1.65
USP48-202ENST00000374730 IL1RAPL1Q9NZN1 696 aa4.74□□□□□ -1.65
USP48-202ENST00000374730 SH3BP4Q9P0V3 963 aa4.74□□□□□ -1.65
USP48-202ENST00000374730 RNF7Q9UBF6 113 aa4.74□□□□□ -1.65
USP48-202ENST00000374730 XPR1Q9UBH6 696 aa4.74□□□□□ -1.65
USP48-202ENST00000374730 ZNF212Q9UDV6 495 aa4.74□□□□□ -1.65
USP48-202ENST00000374730 ANGPTL2Q9UKU9 493 aa4.74□□□□□ -1.65
USP48-202ENST00000374730 NDRG4Q9ULP0 352 aaKnown RBP4.74□□□□□ -1.65
USP48-202ENST00000374730 GABRQQ9UN88 632 aa4.74□□□□□ -1.65
USP48-202ENST00000374730 RAP2CQ9Y3L5 183 aa4.74□□□□□ -1.65
USP48-202ENST00000374730 KIAA1671Q9BY89 1806 aa4.74□□□□□ -1.65
USP48-202ENST00000374730 PLXNA4Q9HCM2 1894 aa4.73□□□□□ -1.65
USP48-202ENST00000374730 HEATR9A2RTY3 570 aa4.73□□□□□ -1.65
USP48-202ENST00000374730 OR6C75A6NL08 312 aa4.73□□□□□ -1.65
USP48-202ENST00000374730 PALM2-AKAP2B1ALY0 433 aaPredicted RBP4.73□□□□□ -1.65
USP48-202ENST00000374730 H0Y3Z8 333 aa4.73□□□□□ -1.65
USP48-202ENST00000374730 HDAC3O15379 428 aa4.73□□□□□ -1.65
USP48-202ENST00000374730 NVLO15381 856 aaKnown RBP4.73□□□□□ -1.65
USP48-202ENST00000374730 MSI1O43347 362 aaKnown RBP4.73□□□□□ -1.65
USP48-202ENST00000374730 FKBP6O75344 327 aa4.73□□□□□ -1.65
USP48-202ENST00000374730 TUSC2O75896 110 aa4.73□□□□□ -1.65
USP48-202ENST00000374730 KRT36O76013 467 aa4.73□□□□□ -1.65
USP48-202ENST00000374730 DDHD2O94830 711 aa4.73□□□□□ -1.65
USP48-202ENST00000374730 HSPA4LO95757 839 aa4.73□□□□□ -1.65
USP48-202ENST00000374730 MT-CYBP00156 380 aaPredicted RBP4.73□□□□□ -1.65
USP48-202ENST00000374730 RPSAP08865 295 aaKnown RBP4.73□□□□□ -1.65
USP48-202ENST00000374730 SLC35E2BP0CK96 405 aa4.73□□□□□ -1.65
USP48-202ENST00000374730 TPH1P17752 444 aa4.73□□□□□ -1.65
USP48-202ENST00000374730 GABRB3P28472 473 aa4.73□□□□□ -1.65
USP48-202ENST00000374730 GRK6P43250 576 aa4.73□□□□□ -1.65
USP48-202ENST00000374730 PAPOLAP51003 745 aaKnown RBP4.73□□□□□ -1.65
USP48-202ENST00000374730 CLCN5P51795 746 aa4.73□□□□□ -1.65
USP48-202ENST00000374730 DNAJB13P59910 316 aa4.73□□□□□ -1.65
USP48-202ENST00000374730 TUBA4AP68366 448 aa4.73□□□□□ -1.65
USP48-202ENST00000374730 MPP1Q00013 466 aa4.73□□□□□ -1.65
USP48-202ENST00000374730 PRKCZQ05513 592 aa4.73□□□□□ -1.65
USP48-202ENST00000374730 KDSRQ06136 332 aa4.73□□□□□ -1.65
USP48-202ENST00000374730 NSUN2Q08J23 767 aaKnown RBP eCLIP4.73□□□□□ -1.65
USP48-202ENST00000374730 PRKAA1Q13131 559 aa4.73□□□□□ -1.65
USP48-202ENST00000374730 MTA1Q13330 715 aa4.73□□□□□ -1.65
USP48-202ENST00000374730 ITGA7Q13683 1181 aa4.73□□□□□ -1.65
USP48-202ENST00000374730 THOC5Q13769 683 aaKnown RBP4.73□□□□□ -1.65
USP48-202ENST00000374730 BLMHQ13867 455 aa4.73□□□□□ -1.65
USP48-202ENST00000374730 HNRNPDQ14103 355 aaKnown RBP4.73□□□□□ -1.65
USP48-202ENST00000374730 ZNF267Q14586 743 aaPredicted RBP4.73□□□□□ -1.65
USP48-202ENST00000374730 POU6F1Q14863 301 aa4.73□□□□□ -1.65
USP48-202ENST00000374730 HERC3Q15034 1050 aa4.73□□□□□ -1.65
USP48-202ENST00000374730 DLG2Q15700 870 aa4.73□□□□□ -1.65
USP48-202ENST00000374730 CCDC6Q16204 474 aa4.73□□□□□ -1.65
USP48-202ENST00000374730 SLC39A12Q504Y0 691 aa4.73□□□□□ -1.65
USP48-202ENST00000374730 CLLU1OSQ5K130 101 aa4.73□□□□□ -1.65
USP48-202ENST00000374730 SH2D4BQ5SQS7 431 aa4.73□□□□□ -1.65
USP48-202ENST00000374730 MAP3K21Q5TCX8 1036 aa4.73□□□□□ -1.65
USP48-202ENST00000374730 LRRC8EQ6NSJ5 796 aa4.73□□□□□ -1.65
USP48-202ENST00000374730 AAGABQ6PD74 315 aa4.73□□□□□ -1.65
USP48-202ENST00000374730 NAPRTQ6XQN6 538 aa4.73□□□□□ -1.65
USP48-202ENST00000374730 LRRC74BQ6ZQY2 392 aa4.73□□□□□ -1.65
USP48-202ENST00000374730 SLC24A5Q71RS6 500 aa4.73□□□□□ -1.65
USP48-202ENST00000374730 OVCH2Q7RTZ1 564 aa4.73□□□□□ -1.65
USP48-202ENST00000374730 GLCCI1Q86VQ1 547 aa4.73□□□□□ -1.65
USP48-202ENST00000374730 LMNTD2Q8IXW0 634 aa4.73□□□□□ -1.65
USP48-202ENST00000374730 KIRREL3Q8IZU9 778 aa4.73□□□□□ -1.65
USP48-202ENST00000374730 CENPLQ8N0S6 344 aaPredicted RBP4.73□□□□□ -1.65
USP48-202ENST00000374730 CPSF7Q8N684 471 aaKnown RBP4.73□□□□□ -1.65
USP48-202ENST00000374730 TEX26Q8N6G2 289 aa4.73□□□□□ -1.65
USP48-202ENST00000374730 CELF5Q8N6W0 485 aaKnown RBP4.73□□□□□ -1.65
USP48-202ENST00000374730 ZNF781Q8N8C0 355 aa4.73□□□□□ -1.65
USP48-202ENST00000374730 TDRD5Q8NAT2 981 aaKnown RBP4.73□□□□□ -1.65
USP48-202ENST00000374730 ACVR1CQ8NER5 493 aa4.73□□□□□ -1.65
USP48-202ENST00000374730 IPMKQ8NFU5 416 aa4.73□□□□□ -1.65
USP48-202ENST00000374730 SPATA22Q8NHS9 363 aa4.73□□□□□ -1.65
USP48-202ENST00000374730 WDR60Q8WVS4 1066 aa4.73□□□□□ -1.65
USP48-202ENST00000374730 POF1BQ8WVV4 589 aa4.73□□□□□ -1.65
USP48-202ENST00000374730 DNAJC9Q8WXX5 260 aa4.73□□□□□ -1.65
USP48-202ENST00000374730 PEX13Q92968 403 aa4.73□□□□□ -1.65
USP48-202ENST00000374730 TADA1Q96BN2 335 aa4.73□□□□□ -1.65
USP48-202ENST00000374730 IMP4Q96G21 291 aaKnown RBP4.73□□□□□ -1.65
USP48-202ENST00000374730 ATXN7L3BQ96GX2 97 aa4.73□□□□□ -1.65
USP48-202ENST00000374730 ZNF333Q96JL9 665 aa4.73□□□□□ -1.65
USP48-202ENST00000374730 CNDP1Q96KN2 507 aa4.73□□□□□ -1.65
USP48-202ENST00000374730 CCDC138Q96M89 665 aa4.73□□□□□ -1.65
USP48-202ENST00000374730 GPR78Q96P69 363 aa4.73□□□□□ -1.65
USP48-202ENST00000374730 PGLYRP2Q96PD5 576 aa4.73□□□□□ -1.65
USP48-202ENST00000374730 PANX3Q96QZ0 392 aa4.73□□□□□ -1.65
USP48-202ENST00000374730 CCDC28BQ9BUN5 200 aa4.73□□□□□ -1.65
USP48-202ENST00000374730 FTHL17Q9BXU8 183 aa4.73□□□□□ -1.65
USP48-202ENST00000374730 ZYG11BQ9C0D3 744 aa4.73□□□□□ -1.65
USP48-202ENST00000374730 ARHGAP39Q9C0H5 1083 aa4.73□□□□□ -1.65
USP48-202ENST00000374730 ILKAPQ9H0C8 392 aaPredicted RBP4.73□□□□□ -1.65
USP48-202ENST00000374730 XRN2Q9H0D6 950 aaKnown RBP eCLIP4.73□□□□□ -1.65
USP48-202ENST00000374730 CXorf56Q9H5V9 222 aa4.73□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms