RNA–Protein interactions for RNA: ENST00000367248.7

SYNE1-204, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 7,165 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-204ENST00000367248 SEMA3AQ14563 771 aa11.29□□□□□ -0.6
SYNE1-204ENST00000367248 MTX3Q5HYI7 312 aa11.29□□□□□ -0.6
SYNE1-204ENST00000367248 MYLIPQ8WY64 445 aa11.29□□□□□ -0.6
SYNE1-204ENST00000367248 MIEF2Q96C03 454 aa11.29□□□□□ -0.6
SYNE1-204ENST00000367248 PGAP3Q96FM1 320 aaPredicted RBP11.29□□□□□ -0.6
SYNE1-204ENST00000367248 K7ERQ8 282 aa11.29□□□□□ -0.6
SYNE1-204ENST00000367248 PCDHGA12O60330 932 aa11.29□□□□□ -0.6
SYNE1-204ENST00000367248 SHOX2O60902 331 aaPredicted RBP11.29□□□□□ -0.6
SYNE1-204ENST00000367248 PGM3O95394 542 aa11.29□□□□□ -0.6
SYNE1-204ENST00000367248 CD247P20963 164 aa11.29□□□□□ -0.6
SYNE1-204ENST00000367248 OTX2P32243 289 aa11.29□□□□□ -0.6
SYNE1-204ENST00000367248 CXCL12P48061 93 aa11.29□□□□□ -0.6
SYNE1-204ENST00000367248 MEF2AQ02078 507 aaPredicted RBP11.29□□□□□ -0.6
SYNE1-204ENST00000367248 DGUOKQ16854 277 aa11.29□□□□□ -0.6
SYNE1-204ENST00000367248 SLC29A4Q7RTT9 530 aa11.29□□□□□ -0.6
SYNE1-204ENST00000367248 CDCA3Q99618 268 aaPredicted RBP11.29□□□□□ -0.6
SYNE1-204ENST00000367248 INMTO95050 263 aa11.29□□□□□ -0.6
SYNE1-204ENST00000367248 RAB6CQ53S08 254 aa11.29□□□□□ -0.6
SYNE1-204ENST00000367248 TIFABQ6ZNK6 161 aa11.29□□□□□ -0.6
SYNE1-204ENST00000367248 TAS1R1Q7RTX1 841 aa11.29□□□□□ -0.6
SYNE1-204ENST00000367248 PACS2Q86VP3 889 aa11.29□□□□□ -0.6
SYNE1-204ENST00000367248 CCDC103Q8IW40 242 aa11.29□□□□□ -0.6
SYNE1-204ENST00000367248 DOK4Q8TEW6 326 aa11.29□□□□□ -0.6
SYNE1-204ENST00000367248 GLYATL1Q969I3 302 aa11.29□□□□□ -0.6
SYNE1-204ENST00000367248 CASD1Q96PB1 797 aa11.29□□□□□ -0.6
SYNE1-204ENST00000367248 GPER1Q99527 375 aa11.29□□□□□ -0.6
SYNE1-204ENST00000367248 LDHAL6BQ9BYZ2 381 aaPredicted RBP11.29□□□□□ -0.6
SYNE1-204ENST00000367248 OR8D2Q9GZM6 311 aa11.29□□□□□ -0.6
SYNE1-204ENST00000367248 RAB6CQ9H0N0 254 aa11.29□□□□□ -0.6
SYNE1-204ENST00000367248 METTL7AQ9H8H3 244 aa11.29□□□□□ -0.6
SYNE1-204ENST00000367248 S100A14Q9HCY8 104 aa11.29□□□□□ -0.6
SYNE1-204ENST00000367248 TNFRSF11BO00300 401 aa11.28□□□□□ -0.6
SYNE1-204ENST00000367248 KLF11O14901 512 aa11.28□□□□□ -0.6
SYNE1-204ENST00000367248 GPIP06744 558 aa11.28□□□□□ -0.6
SYNE1-204ENST00000367248 ITGA3P26006 1051 aa11.28□□□□□ -0.6
SYNE1-204ENST00000367248 CEP78Q5JTW2 689 aa11.28□□□□□ -0.6
SYNE1-204ENST00000367248 NLGN4XQ8N0W4 816 aa11.28□□□□□ -0.6
SYNE1-204ENST00000367248 GJD3Q8N144 294 aa11.28□□□□□ -0.6
SYNE1-204ENST00000367248 FAM81AQ8TBF8 368 aa11.28□□□□□ -0.6
SYNE1-204ENST00000367248 RGMAQ96B86 450 aa11.28□□□□□ -0.6
SYNE1-204ENST00000367248 WDR92Q96MX6 357 aa11.28□□□□□ -0.6
SYNE1-204ENST00000367248 OR2M4Q96R27 311 aa11.28□□□□□ -0.6
SYNE1-204ENST00000367248 C8orf33Q9H7E9 229 aaPredicted RBP11.28□□□□□ -0.6
SYNE1-204ENST00000367248 FADS3Q9Y5Q0 445 aa11.28□□□□□ -0.6
SYNE1-204ENST00000367248 MANBAO00462 879 aa11.28□□□□□ -0.6
SYNE1-204ENST00000367248 SEMA4FO95754 770 aa11.28□□□□□ -0.6
SYNE1-204ENST00000367248 TRAF3Q13114 568 aa11.28□□□□□ -0.6
SYNE1-204ENST00000367248 HKDC1Q2TB90 917 aa11.28□□□□□ -0.6
SYNE1-204ENST00000367248 SLC9B1Q4ZJI4 515 aa11.28□□□□□ -0.6
SYNE1-204ENST00000367248 LACTB2Q53H82 288 aaPredicted RBP11.28□□□□□ -0.6
SYNE1-204ENST00000367248 FAM92BQ6ZTR7 304 aa11.28□□□□□ -0.6
SYNE1-204ENST00000367248 IGDCC3Q8IVU1 814 aa11.28□□□□□ -0.6
SYNE1-204ENST00000367248 NATD1Q8N6N6 113 aa11.28□□□□□ -0.6
SYNE1-204ENST00000367248 PMM1Q92871 262 aa11.28□□□□□ -0.6
SYNE1-204ENST00000367248 POPDC3Q9HBV1 291 aa11.28□□□□□ -0.6
SYNE1-204ENST00000367248 NECTIN3Q9NQS3 549 aa11.28□□□□□ -0.6
SYNE1-204ENST00000367248 IL7RP16871 459 aa11.28□□□□□ -0.6
SYNE1-204ENST00000367248 CRISP3P54108 245 aa11.28□□□□□ -0.6
SYNE1-204ENST00000367248 SHHQ15465 462 aa11.28□□□□□ -0.6
SYNE1-204ENST00000367248 TOR1AIP1Q5JTV8 583 aa11.28□□□□□ -0.6
SYNE1-204ENST00000367248 SMARCD3Q6STE5 483 aa11.28□□□□□ -0.6
SYNE1-204ENST00000367248 RELL1Q8IUW5 271 aa11.28□□□□□ -0.6
SYNE1-204ENST00000367248 TRAM1L1Q8N609 369 aa11.28□□□□□ -0.6
SYNE1-204ENST00000367248 OR4F6Q8NGB9 312 aa11.28□□□□□ -0.6
SYNE1-204ENST00000367248 PTGFRNQ9P2B2 879 aa11.28□□□□□ -0.6
SYNE1-204ENST00000367248 NUP188Q5SRE5 1749 aa11.28□□□□□ -0.6
SYNE1-204ENST00000367248 FAM149AA5PLN7 773 aa11.28□□□□□ -0.6
SYNE1-204ENST00000367248 OR6C74A6NCV1 312 aa11.28□□□□□ -0.6
SYNE1-204ENST00000367248 DUXAA6NLW8 204 aa11.28□□□□□ -0.6
SYNE1-204ENST00000367248 LOC730098B7Z3J9 87 aa11.28□□□□□ -0.6
SYNE1-204ENST00000367248 CLEC3AO75596 197 aa11.28□□□□□ -0.6
SYNE1-204ENST00000367248 IL33O95760 270 aa11.28□□□□□ -0.6
SYNE1-204ENST00000367248 FHP07954 510 aa11.28□□□□□ -0.6
SYNE1-204ENST00000367248 KHKP50053 298 aa11.28□□□□□ -0.6
SYNE1-204ENST00000367248 CDK9P50750 372 aaKnown RBP11.28□□□□□ -0.6
SYNE1-204ENST00000367248 CCNIQ14094 377 aa11.28□□□□□ -0.6
SYNE1-204ENST00000367248 KLHL24Q6TFL4 600 aa11.28□□□□□ -0.6
SYNE1-204ENST00000367248 TMIGD1Q6UXZ0 262 aa11.28□□□□□ -0.6
SYNE1-204ENST00000367248 PHOSPHO2Q8TCD6 241 aa11.28□□□□□ -0.6
SYNE1-204ENST00000367248 ART5Q96L15 291 aa11.28□□□□□ -0.6
SYNE1-204ENST00000367248 GORASP1Q9BQQ3 440 aa11.28□□□□□ -0.6
SYNE1-204ENST00000367248 RGPD1P0DJD0 1748 aa11.28□□□□□ -0.6
SYNE1-204ENST00000367248 LOC100506127A0A0U1RQW1 187 aa11.28□□□□□ -0.6
SYNE1-204ENST00000367248 PSMD9O00233 223 aa11.28□□□□□ -0.6
SYNE1-204ENST00000367248 ADAMDEC1O15204 470 aa11.28□□□□□ -0.6
SYNE1-204ENST00000367248 SRPRAP08240 638 aaKnown RBP11.28□□□□□ -0.6
SYNE1-204ENST00000367248 PTX3P26022 381 aaPredicted RBP11.28□□□□□ -0.6
SYNE1-204ENST00000367248 TGFBIQ15582 683 aa11.28□□□□□ -0.6
SYNE1-204ENST00000367248 GPR68Q15743 365 aa11.28□□□□□ -0.6
SYNE1-204ENST00000367248 TRIM71Q2Q1W2 868 aaKnown RBP11.28□□□□□ -0.6
SYNE1-204ENST00000367248 ARMC3Q5W041 872 aa11.28□□□□□ -0.6
SYNE1-204ENST00000367248 SLC30A6Q6NXT4 461 aa11.28□□□□□ -0.6
SYNE1-204ENST00000367248 C19orf18Q8NEA5 215 aa11.28□□□□□ -0.6
SYNE1-204ENST00000367248 TRPV3Q8NET8 790 aa11.28□□□□□ -0.6
SYNE1-204ENST00000367248 OR4K17Q8NGC6 315 aa11.28□□□□□ -0.6
SYNE1-204ENST00000367248 FIBINQ8TAL6 211 aa11.28□□□□□ -0.6
SYNE1-204ENST00000367248 PRORSD1PA6NEY8 169 aa11.28□□□□□ -0.6
SYNE1-204ENST00000367248 HCN1O60741 890 aa11.28□□□□□ -0.6
SYNE1-204ENST00000367248 CD70P32970 193 aa11.28□□□□□ -0.6
SYNE1-204ENST00000367248 RNF144AP50876 292 aaPredicted RBP11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms