RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 CATSPEREQ5SY80 951 aa11.8□□□□□ -0.52
CLIP3-201ENST00000360535 C1QTNF12Q5T7M4 302 aa11.8□□□□□ -0.52
CLIP3-201ENST00000360535 NCCRP1Q6ZVX7 275 aaPredicted RBP11.8□□□□□ -0.52
CLIP3-201ENST00000360535 VRK3Q8IV63 474 aa11.8□□□□□ -0.52
CLIP3-201ENST00000360535 P3H2Q8IVL5 708 aa11.8□□□□□ -0.52
CLIP3-201ENST00000360535 LMNTD1Q8N9Z9 388 aa11.8□□□□□ -0.52
CLIP3-201ENST00000360535 PROX1Q92786 737 aa11.8□□□□□ -0.52
CLIP3-201ENST00000360535 MED8Q96G25 268 aa11.8□□□□□ -0.52
CLIP3-201ENST00000360535 ABHD8Q96I13 439 aa11.8□□□□□ -0.52
CLIP3-201ENST00000360535 HSH2DQ96JZ2 352 aa11.8□□□□□ -0.52
CLIP3-201ENST00000360535 SERHLQ9NQF3 203 aa11.8□□□□□ -0.52
CLIP3-201ENST00000360535 TESMINQ9Y4I5 508 aa11.8□□□□□ -0.52
CLIP3-201ENST00000360535 CCDC88CQ9P219 2028 aa11.8□□□□□ -0.52
CLIP3-201ENST00000360535 A0A096LPI6 279 aa11.79□□□□□ -0.52
CLIP3-201ENST00000360535 MANSC4A6NHS7 340 aaPredicted RBP11.79□□□□□ -0.52
CLIP3-201ENST00000360535 RGS10O43665 173 aa11.79□□□□□ -0.52
CLIP3-201ENST00000360535 ERN1O75460 977 aaKnown RBP11.79□□□□□ -0.52
CLIP3-201ENST00000360535 GBAP04062 536 aa11.79□□□□□ -0.52
CLIP3-201ENST00000360535 GALTP07902 379 aa11.79□□□□□ -0.52
CLIP3-201ENST00000360535 PAX3P23760 479 aa11.79□□□□□ -0.52
CLIP3-201ENST00000360535 C21orf33P30042 268 aaPredicted RBP11.79□□□□□ -0.52
CLIP3-201ENST00000360535 POM121L1PQ3SYA9 428 aa11.79□□□□□ -0.52
CLIP3-201ENST00000360535 SOWAHCQ53LP3 525 aaPredicted RBP11.79□□□□□ -0.52
CLIP3-201ENST00000360535 ANKRD13BQ86YJ7 626 aa11.79□□□□□ -0.52
CLIP3-201ENST00000360535 PJA1Q8NG27 643 aa11.79□□□□□ -0.52
CLIP3-201ENST00000360535 ZHX1-C8orf76Q96EF9 292 aa11.79□□□□□ -0.52
CLIP3-201ENST00000360535 SPATA17Q96L03 361 aa11.79□□□□□ -0.52
CLIP3-201ENST00000360535 ZNF641Q96N77 438 aaPredicted RBP11.79□□□□□ -0.52
CLIP3-201ENST00000360535 HEPHQ9BQS7 1158 aa11.79□□□□□ -0.52
CLIP3-201ENST00000360535 MICAL3Q7RTP6 2002 aa11.79□□□□□ -0.52
CLIP3-201ENST00000360535 NPIPB15A6NHN6 443 aaPredicted RBP11.79□□□□□ -0.52
CLIP3-201ENST00000360535 PRRG1O14668 218 aa11.79□□□□□ -0.52
CLIP3-201ENST00000360535 FABP3P05413 133 aa11.79□□□□□ -0.52
CLIP3-201ENST00000360535 ITIH1P19827 911 aa11.79□□□□□ -0.52
CLIP3-201ENST00000360535 CCR7P32248 378 aa11.79□□□□□ -0.52
CLIP3-201ENST00000360535 MRPL19P49406 292 aaKnown RBP11.79□□□□□ -0.52
CLIP3-201ENST00000360535 CREMQ03060 361 aa11.79□□□□□ -0.52
CLIP3-201ENST00000360535 CHIT1Q13231 466 aa11.79□□□□□ -0.52
CLIP3-201ENST00000360535 CBX2Q14781 532 aaPredicted RBP11.79□□□□□ -0.52
CLIP3-201ENST00000360535 TTLL9Q3SXZ7 439 aa11.79□□□□□ -0.52
CLIP3-201ENST00000360535 ATP13A5Q4VNC0 1218 aa11.79□□□□□ -0.52
CLIP3-201ENST00000360535 COLEC12Q5KU26 742 aa11.79□□□□□ -0.52
CLIP3-201ENST00000360535 GPRC6AQ5T6X5 926 aa11.79□□□□□ -0.52
CLIP3-201ENST00000360535 ATG9BQ674R7 924 aa11.79□□□□□ -0.52
CLIP3-201ENST00000360535 ADNP2Q6IQ32 1131 aa11.79□□□□□ -0.52
CLIP3-201ENST00000360535 SERPINA13PQ6UXR4 307 aa11.79□□□□□ -0.52
CLIP3-201ENST00000360535 CADM3Q8N126 398 aa11.79□□□□□ -0.52
CLIP3-201ENST00000360535 UTP15Q8TED0 518 aaKnown RBP11.79□□□□□ -0.52
CLIP3-201ENST00000360535 KCNH6Q9H252 994 aa11.79□□□□□ -0.52
CLIP3-201ENST00000360535 REEP1Q9H902 201 aa11.79□□□□□ -0.52
CLIP3-201ENST00000360535 ZBTB20Q9HC78 741 aaPredicted RBP11.79□□□□□ -0.52
CLIP3-201ENST00000360535 MAGEE1Q9HCI5 957 aa11.79□□□□□ -0.52
CLIP3-201ENST00000360535 ATAD3AQ9NVI7 634 aa11.79□□□□□ -0.52
CLIP3-201ENST00000360535 THG1LQ9NWX6 298 aaKnown RBP11.79□□□□□ -0.52
CLIP3-201ENST00000360535 SH3BP4Q9P0V3 963 aa11.79□□□□□ -0.52
CLIP3-201ENST00000360535 TMEM189-UBE2V1I3L0A0 370 aa11.79□□□□□ -0.52
CLIP3-201ENST00000360535 TBX1O43435 398 aa11.79□□□□□ -0.52
CLIP3-201ENST00000360535 GJA1P17302 382 aa11.79□□□□□ -0.52
CLIP3-201ENST00000360535 OR1E2P47887 323 aa11.79□□□□□ -0.52
CLIP3-201ENST00000360535 FCGRTP55899 365 aa11.79□□□□□ -0.52
CLIP3-201ENST00000360535 ABRQ12979 859 aa11.79□□□□□ -0.52
CLIP3-201ENST00000360535 CYP2U1Q7Z449 544 aa11.79□□□□□ -0.52
CLIP3-201ENST00000360535 ZSWIM9Q86XI8 627 aa11.79□□□□□ -0.52
CLIP3-201ENST00000360535 SETD9Q8NE22 299 aa11.79□□□□□ -0.52
CLIP3-201ENST00000360535 SH3KBP1Q96B97 665 aa11.79□□□□□ -0.52
CLIP3-201ENST00000360535 LGALS12Q96DT0 336 aa11.79□□□□□ -0.52
CLIP3-201ENST00000360535 PDLIM5Q96HC4 596 aaKnown RBP11.79□□□□□ -0.52
CLIP3-201ENST00000360535 CNDP2Q96KP4 475 aaKnown RBP11.79□□□□□ -0.52
CLIP3-201ENST00000360535 RDH12Q96NR8 316 aa11.79□□□□□ -0.52
CLIP3-201ENST00000360535 TRIT1Q9H3H1 467 aaKnown RBP11.79□□□□□ -0.52
CLIP3-201ENST00000360535 SLC32A1Q9H598 525 aa11.79□□□□□ -0.52
CLIP3-201ENST00000360535 RNF167Q9H6Y7 350 aa11.79□□□□□ -0.52
CLIP3-201ENST00000360535 TMEM161AQ9NX61 479 aa11.79□□□□□ -0.52
CLIP3-201ENST00000360535 SIRT5Q9NXA8 310 aa11.79□□□□□ -0.52
CLIP3-201ENST00000360535 USE1Q9NZ43 259 aa11.79□□□□□ -0.52
CLIP3-201ENST00000360535 RAPGEFL1Q9UHV5 662 aa11.79□□□□□ -0.52
CLIP3-201ENST00000360535 OR2AG2A6NM03 316 aa11.78□□□□□ -0.52
CLIP3-201ENST00000360535 FAM220BPB1ANY3 271 aa11.78□□□□□ -0.52
CLIP3-201ENST00000360535 H7C0S8 307 aa11.78□□□□□ -0.52
CLIP3-201ENST00000360535 EPN2O95208 641 aa11.78□□□□□ -0.52
CLIP3-201ENST00000360535 TRBC1P01850 177 aa11.78□□□□□ -0.52
CLIP3-201ENST00000360535 RETP07949 1114 aa11.78□□□□□ -0.52
CLIP3-201ENST00000360535 CD6P30203 668 aa11.78□□□□□ -0.52
CLIP3-201ENST00000360535 SERPINB10P48595 397 aa11.78□□□□□ -0.52
CLIP3-201ENST00000360535 CLDN8P56748 225 aa11.78□□□□□ -0.52
CLIP3-201ENST00000360535 RPP38P78345 283 aaKnown RBP11.78□□□□□ -0.52
CLIP3-201ENST00000360535 MVKQ03426 396 aa11.78□□□□□ -0.52
CLIP3-201ENST00000360535 IRF5Q13568 498 aa11.78□□□□□ -0.52
CLIP3-201ENST00000360535 GBX1Q14549 363 aa11.78□□□□□ -0.52
CLIP3-201ENST00000360535 ZXDCQ2QGD7 858 aaPredicted RBP11.78□□□□□ -0.52
CLIP3-201ENST00000360535 NEK5Q6P3R8 708 aa11.78□□□□□ -0.52
CLIP3-201ENST00000360535 RNF180Q86T96 592 aa11.78□□□□□ -0.52
CLIP3-201ENST00000360535 SYTL1Q8IYJ3 562 aa11.78□□□□□ -0.52
CLIP3-201ENST00000360535 PCSK9Q8NBP7 692 aaKnown RBP11.78□□□□□ -0.52
CLIP3-201ENST00000360535 MCFD2Q8NI22 146 aa11.78□□□□□ -0.52
CLIP3-201ENST00000360535 APOL4Q9BPW4 351 aa11.78□□□□□ -0.52
CLIP3-201ENST00000360535 SNX6Q9UNH7 406 aa11.78□□□□□ -0.52
CLIP3-201ENST00000360535 SAMD4AQ9UPU9 718 aaKnown RBP11.78□□□□□ -0.52
CLIP3-201ENST00000360535 PMF1-BGLAPU3KQ54 211 aa11.78□□□□□ -0.52
CLIP3-201ENST00000360535 SOBPA7XYQ1 873 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms