RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 ATG12O94817 140 aa12.34□□□□□ -0.43
COL6A3-203ENST00000353578 FMO3P31513 532 aa12.34□□□□□ -0.43
COL6A3-203ENST00000353578 SLC9B1Q4ZJI4 515 aa12.34□□□□□ -0.43
COL6A3-203ENST00000353578 KRBOX4Q5JUW0 171 aa12.34□□□□□ -0.43
COL6A3-203ENST00000353578 RFPL4BQ6ZWI9 263 aa12.34□□□□□ -0.43
COL6A3-203ENST00000353578 SYNPOQ8N3V7 929 aa12.34□□□□□ -0.43
COL6A3-203ENST00000353578 CDADC1Q9BWV3 514 aa12.34□□□□□ -0.43
COL6A3-203ENST00000353578 ZNF208O43345 1280 aa12.33□□□□□ -0.43
COL6A3-203ENST00000353578 TKTL1P51854 596 aa12.33□□□□□ -0.43
COL6A3-203ENST00000353578 TGFB2P61812 414 aa12.33□□□□□ -0.43
COL6A3-203ENST00000353578 ZNF460Q14592 562 aa12.33□□□□□ -0.43
COL6A3-203ENST00000353578 TIFABQ6ZNK6 161 aa12.33□□□□□ -0.43
COL6A3-203ENST00000353578 NIPA2Q8N8Q9 360 aa12.33□□□□□ -0.43
COL6A3-203ENST00000353578 TMED9Q9BVK6 235 aa12.33□□□□□ -0.43
COL6A3-203ENST00000353578 DCDC2CA8MYV0 355 aa12.33□□□□□ -0.44
COL6A3-203ENST00000353578 RCBTB2O95199 551 aa12.33□□□□□ -0.44
COL6A3-203ENST00000353578 CCR4P51679 360 aa12.33□□□□□ -0.44
COL6A3-203ENST00000353578 HTRA4P83105 476 aaPredicted RBP12.33□□□□□ -0.44
COL6A3-203ENST00000353578 GTF2H2Q13888 395 aa12.33□□□□□ -0.44
COL6A3-203ENST00000353578 GPR153Q6NV75 609 aa12.33□□□□□ -0.44
COL6A3-203ENST00000353578 GTF2H2CQ6P1K8 395 aa12.33□□□□□ -0.44
COL6A3-203ENST00000353578 SCUBE3Q8IX30 993 aa12.33□□□□□ -0.44
COL6A3-203ENST00000353578 BEND7Q8N7W2 519 aaPredicted RBP12.33□□□□□ -0.44
COL6A3-203ENST00000353578 RASGEF1AQ8N9B8 481 aa12.33□□□□□ -0.44
COL6A3-203ENST00000353578 TREX2Q9BQ50 279 aaPredicted RBP12.33□□□□□ -0.44
COL6A3-203ENST00000353578 NEUROD4Q9HD90 331 aa12.33□□□□□ -0.44
COL6A3-203ENST00000353578 NANSQ9NR45 359 aa12.33□□□□□ -0.44
COL6A3-203ENST00000353578 USP31Q70CQ4 1352 aa12.33□□□□□ -0.44
COL6A3-203ENST00000353578 FAM46CQ5VWP2 391 aa12.33□□□□□ -0.44
COL6A3-203ENST00000353578 OR52E8Q6IFG1 317 aa12.33□□□□□ -0.44
COL6A3-203ENST00000353578 PGM2L1Q6PCE3 622 aa12.33□□□□□ -0.44
COL6A3-203ENST00000353578 C3P1Q6ZMU1 363 aa12.33□□□□□ -0.44
COL6A3-203ENST00000353578 OR10G2Q8NGC3 310 aa12.33□□□□□ -0.44
COL6A3-203ENST00000353578 OR2L8Q8NGY9 312 aa12.33□□□□□ -0.44
COL6A3-203ENST00000353578 E9PI62 339 aa12.33□□□□□ -0.44
COL6A3-203ENST00000353578 SCN2BO60939 215 aa12.33□□□□□ -0.44
COL6A3-203ENST00000353578 LUMP51884 338 aaPredicted RBP12.33□□□□□ -0.44
COL6A3-203ENST00000353578 TESCQ96BS2 214 aa12.33□□□□□ -0.44
COL6A3-203ENST00000353578 ZBED6CLQ96FA7 236 aaPredicted RBP12.33□□□□□ -0.44
COL6A3-203ENST00000353578 C20orf202A1L168 122 aa12.33□□□□□ -0.44
COL6A3-203ENST00000353578 JAM2P57087 298 aa12.33□□□□□ -0.44
COL6A3-203ENST00000353578 PPP4CP60510 307 aa12.33□□□□□ -0.44
COL6A3-203ENST00000353578 KCNC4Q03721 635 aa12.33□□□□□ -0.44
COL6A3-203ENST00000353578 TLE2Q04725 743 aa12.33□□□□□ -0.44
COL6A3-203ENST00000353578 KCNIP4Q6PIL6 250 aa12.33□□□□□ -0.44
COL6A3-203ENST00000353578 TSPYL5Q86VY4 417 aaPredicted RBP12.33□□□□□ -0.44
COL6A3-203ENST00000353578 ZNF675Q8TD23 568 aa12.33□□□□□ -0.44
COL6A3-203ENST00000353578 ADAMTS13Q76LX8 1427 aa12.33□□□□□ -0.44
COL6A3-203ENST00000353578 ZNF35P13682 527 aa12.33□□□□□ -0.44
COL6A3-203ENST00000353578 S100A10P60903 97 aa12.33□□□□□ -0.44
COL6A3-203ENST00000353578 NEIL3Q8TAT5 605 aa12.33□□□□□ -0.44
COL6A3-203ENST00000353578 TLE6Q9H808 572 aa12.33□□□□□ -0.44
COL6A3-203ENST00000353578 OR12D3Q9UGF7 316 aa12.33□□□□□ -0.44
COL6A3-203ENST00000353578 NPHP4O75161 1426 aaPredicted RBP12.33□□□□□ -0.44
COL6A3-203ENST00000353578 PMM2O15305 246 aa12.33□□□□□ -0.44
COL6A3-203ENST00000353578 TUBP50607 506 aa12.33□□□□□ -0.44
COL6A3-203ENST00000353578 FAM174BQ3ZCQ3 159 aa12.33□□□□□ -0.44
COL6A3-203ENST00000353578 ACOT1Q86TX2 421 aa12.33□□□□□ -0.44
COL6A3-203ENST00000353578 PCDHGA8Q9Y5G5 932 aa12.33□□□□□ -0.44
COL6A3-203ENST00000353578 LATS1O95835 1130 aa12.33□□□□□ -0.44
COL6A3-203ENST00000353578 BOP1Q14137 746 aaKnown RBP12.33□□□□□ -0.44
COL6A3-203ENST00000353578 TMPRSS11BQ86T26 416 aa12.33□□□□□ -0.44
COL6A3-203ENST00000353578 PCDHB18PQ96TA0 734 aa12.33□□□□□ -0.44
COL6A3-203ENST00000353578 BTBD2Q9BX70 525 aa12.33□□□□□ -0.44
COL6A3-203ENST00000353578 ZNF225Q9UK10 706 aa12.33□□□□□ -0.44
COL6A3-203ENST00000353578 MIA3Q5JRA6 1907 aa12.33□□□□□ -0.44
COL6A3-203ENST00000353578 IQCMA0A1B0GVH7 501 aa12.32□□□□□ -0.44
COL6A3-203ENST00000353578 PTBP1P26599 531 aaKnown RBP eCLIP12.32□□□□□ -0.44
COL6A3-203ENST00000353578 DNAJB13P59910 316 aa12.32□□□□□ -0.44
COL6A3-203ENST00000353578 HNRNPDQ14103 355 aaKnown RBP12.32□□□□□ -0.44
COL6A3-203ENST00000353578 C12orf40Q86WS4 652 aa12.32□□□□□ -0.44
COL6A3-203ENST00000353578 YAF2Q8IY57 180 aa12.32□□□□□ -0.44
COL6A3-203ENST00000353578 SHKBP1Q8TBC3 707 aa12.32□□□□□ -0.44
COL6A3-203ENST00000353578 DENND1AQ8TEH3 1009 aa12.32□□□□□ -0.44
COL6A3-203ENST00000353578 ABCG5Q9H222 651 aa12.32□□□□□ -0.44
COL6A3-203ENST00000353578 SLC22A11Q9NSA0 550 aa12.32□□□□□ -0.44
COL6A3-203ENST00000353578 ZDHHC18Q9NUE0 388 aa12.32□□□□□ -0.44
COL6A3-203ENST00000353578 TMX2Q9Y320 296 aa12.32□□□□□ -0.44
COL6A3-203ENST00000353578 CYP17A1P05093 508 aa12.32□□□□□ -0.44
COL6A3-203ENST00000353578 RFX3P48380 749 aa12.32□□□□□ -0.44
COL6A3-203ENST00000353578 DGKGP49619 791 aa12.32□□□□□ -0.44
COL6A3-203ENST00000353578 TAS2R50P59544 299 aa12.32□□□□□ -0.44
COL6A3-203ENST00000353578 CXCR4P61073 352 aa12.32□□□□□ -0.44
COL6A3-203ENST00000353578 FSTL4Q6MZW2 842 aa12.32□□□□□ -0.44
COL6A3-203ENST00000353578 CAPN13Q6MZZ7 669 aaPredicted RBP12.32□□□□□ -0.44
COL6A3-203ENST00000353578 CHST4Q8NCG5 386 aa12.32□□□□□ -0.44
COL6A3-203ENST00000353578 SIAEQ9HAT2 523 aa12.32□□□□□ -0.44
COL6A3-203ENST00000353578 ACOT13Q9NPJ3 140 aa12.32□□□□□ -0.44
COL6A3-203ENST00000353578 MYCLP1P12525 358 aaPredicted RBP12.32□□□□□ -0.44
COL6A3-203ENST00000353578 NCK1P16333 377 aa12.32□□□□□ -0.44
COL6A3-203ENST00000353578 COL13A1Q5TAT6 717 aaPredicted RBP12.32□□□□□ -0.44
COL6A3-203ENST00000353578 HGSNATQ68CP4 663 aa12.32□□□□□ -0.44
COL6A3-203ENST00000353578 HIST2H3AQ71DI3 136 aa12.32□□□□□ -0.44
COL6A3-203ENST00000353578 ABHD11Q8NFV4 315 aa12.32□□□□□ -0.44
COL6A3-203ENST00000353578 OR5T3Q8NGG3 340 aa12.32□□□□□ -0.44
COL6A3-203ENST00000353578 SNAPC3Q92966 411 aa12.32□□□□□ -0.44
COL6A3-203ENST00000353578 FNIP2Q9P278 1114 aa12.32□□□□□ -0.44
COL6A3-203ENST00000353578 STK25O00506 426 aa12.32□□□□□ -0.44
COL6A3-203ENST00000353578 MSANTD2Q6P1R3 559 aa12.32□□□□□ -0.44
COL6A3-203ENST00000353578 GAREM2Q75VX8 874 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms