RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 ZNF451Q9Y4E5 1061 aa6.61□□□□□ -1.35
VPS39-202ENST00000348544 HS3ST4Q9Y661 456 aa6.61□□□□□ -1.35
VPS39-202ENST00000348544 A0A075B6Q4 140 aa6.61□□□□□ -1.35
VPS39-202ENST00000348544 A0A1W2PQ72 361 aa6.61□□□□□ -1.35
VPS39-202ENST00000348544 M0R129 80 aa6.61□□□□□ -1.35
VPS39-202ENST00000348544 GFRA2O00451 464 aa6.61□□□□□ -1.35
VPS39-202ENST00000348544 AKR7A2O43488 359 aa6.61□□□□□ -1.35
VPS39-202ENST00000348544 AOC2O75106 756 aa6.61□□□□□ -1.35
VPS39-202ENST00000348544 CNMDO75829 334 aa6.61□□□□□ -1.35
VPS39-202ENST00000348544 SLC10A3P09131 477 aa6.61□□□□□ -1.35
VPS39-202ENST00000348544 HSMCR30P0CW71 290 aa6.61□□□□□ -1.35
VPS39-202ENST00000348544 SOX6P35712 828 aa6.61□□□□□ -1.35
VPS39-202ENST00000348544 RENBPP51606 427 aa6.61□□□□□ -1.35
VPS39-202ENST00000348544 NKX3-2P78367 333 aa6.61□□□□□ -1.35
VPS39-202ENST00000348544 HOXC5Q00444 222 aa6.61□□□□□ -1.35
VPS39-202ENST00000348544 TARDBPQ13148 414 aaKnown RBP eCLIP6.61□□□□□ -1.35
VPS39-202ENST00000348544 GRIK4Q16099 956 aa6.61□□□□□ -1.35
VPS39-202ENST00000348544 IQCCQ4KMZ1 466 aa6.61□□□□□ -1.35
VPS39-202ENST00000348544 GNASQ5JWF2 1037 aa6.61□□□□□ -1.35
VPS39-202ENST00000348544 MARC1Q5VT66 337 aa6.61□□□□□ -1.35
VPS39-202ENST00000348544 MILR1Q7Z6M3 343 aa6.61□□□□□ -1.35
VPS39-202ENST00000348544 ADAMTSL2Q86TH1 951 aa6.61□□□□□ -1.35
VPS39-202ENST00000348544 ANKRD46Q86W74 232 aa6.61□□□□□ -1.35
VPS39-202ENST00000348544 GRAMD2AQ8IUY3 354 aa6.61□□□□□ -1.35
VPS39-202ENST00000348544 P3H2Q8IVL5 708 aa6.61□□□□□ -1.35
VPS39-202ENST00000348544 LAX1Q8IWV1 398 aa6.61□□□□□ -1.35
VPS39-202ENST00000348544 TRIM48Q8IWZ4 208 aa6.61□□□□□ -1.35
VPS39-202ENST00000348544 CACTIN-AS1Q8N1I8 211 aa6.61□□□□□ -1.35
VPS39-202ENST00000348544 PAF1Q8N7H5 531 aa6.61□□□□□ -1.35
VPS39-202ENST00000348544 SCAMP5Q8TAC9 235 aa6.61□□□□□ -1.35
VPS39-202ENST00000348544 BHMTQ93088 406 aa6.61□□□□□ -1.35
VPS39-202ENST00000348544 PSMG2Q969U7 264 aa6.61□□□□□ -1.35
VPS39-202ENST00000348544 REPS1Q96D71 796 aa6.61□□□□□ -1.35
VPS39-202ENST00000348544 LINGO1Q96FE5 620 aa6.61□□□□□ -1.35
VPS39-202ENST00000348544 CDKN2AIPNLQ96HQ2 116 aa6.61□□□□□ -1.35
VPS39-202ENST00000348544 CEP19Q96LK0 163 aa6.61□□□□□ -1.35
VPS39-202ENST00000348544 VPS35Q96QK1 796 aa6.61□□□□□ -1.35
VPS39-202ENST00000348544 GABARAPL3Q9BY60 117 aa6.61□□□□□ -1.35
VPS39-202ENST00000348544 THUMPD1Q9NXG2 353 aaKnown RBP6.61□□□□□ -1.35
VPS39-202ENST00000348544 CPA4Q9UI42 421 aa6.61□□□□□ -1.35
VPS39-202ENST00000348544 ZMYM5Q9UJ78 669 aa6.61□□□□□ -1.35
VPS39-202ENST00000348544 ZNF490Q9ULM2 529 aaPredicted RBP6.61□□□□□ -1.35
VPS39-202ENST00000348544 SPEF1Q9Y4P9 236 aa6.61□□□□□ -1.35
VPS39-202ENST00000348544 PLXNB2O15031 1838 aa6.6□□□□□ -1.35
VPS39-202ENST00000348544 OR6C70A6NIJ9 312 aa6.6□□□□□ -1.35
VPS39-202ENST00000348544 B4DXG7 233 aa6.6□□□□□ -1.35
VPS39-202ENST00000348544 PTGESO14684 152 aa6.6□□□□□ -1.35
VPS39-202ENST00000348544 FFAR3O14843 346 aa6.6□□□□□ -1.35
VPS39-202ENST00000348544 GPR42O15529 346 aa6.6□□□□□ -1.35
VPS39-202ENST00000348544 OR1I1O60431 355 aa6.6□□□□□ -1.35
VPS39-202ENST00000348544 GPR32O75388 356 aa6.6□□□□□ -1.35
VPS39-202ENST00000348544 GPX5O75715 221 aa6.6□□□□□ -1.35
VPS39-202ENST00000348544 IL6P05231 212 aa6.6□□□□□ -1.35
VPS39-202ENST00000348544 ITGB1P05556 798 aa6.6□□□□□ -1.35
VPS39-202ENST00000348544 IFI30P13284 250 aa6.6□□□□□ -1.35
VPS39-202ENST00000348544 M6PRP20645 277 aa6.6□□□□□ -1.35
VPS39-202ENST00000348544 TIE1P35590 1138 aa6.6□□□□□ -1.35
VPS39-202ENST00000348544 TGM4P49221 684 aa6.6□□□□□ -1.35
VPS39-202ENST00000348544 ARHGDIAP52565 204 aa6.6□□□□□ -1.35
VPS39-202ENST00000348544 FCHO2Q0JRZ9 810 aa6.6□□□□□ -1.35
VPS39-202ENST00000348544 FAPQ12884 760 aa6.6□□□□□ -1.35
VPS39-202ENST00000348544 ARHGEF6Q15052 776 aa6.6□□□□□ -1.35
VPS39-202ENST00000348544 SSX1Q16384 188 aa6.6□□□□□ -1.35
VPS39-202ENST00000348544 PTPRNQ16849 979 aa6.6□□□□□ -1.35
VPS39-202ENST00000348544 FBXO43Q4G163 708 aa6.6□□□□□ -1.35
VPS39-202ENST00000348544 UBXN11Q5T124 520 aa6.6□□□□□ -1.35
VPS39-202ENST00000348544 LRIF1Q5T3J3 769 aa6.6□□□□□ -1.35
VPS39-202ENST00000348544 MLIPQ5VWP3 458 aa6.6□□□□□ -1.35
VPS39-202ENST00000348544 SYCE2Q6PIF2 218 aa6.6□□□□□ -1.35
VPS39-202ENST00000348544 FLCNQ8NFG4 579 aa6.6□□□□□ -1.35
VPS39-202ENST00000348544 ST13P5Q8NFI4 369 aaPredicted RBP6.6□□□□□ -1.35
VPS39-202ENST00000348544 CD200R1Q8TD46 325 aa6.6□□□□□ -1.35
VPS39-202ENST00000348544 MYDGFQ969H8 173 aa6.6□□□□□ -1.35
VPS39-202ENST00000348544 RMDN1Q96DB5 314 aa6.6□□□□□ -1.35
VPS39-202ENST00000348544 KLRG1Q96E93 195 aa6.6□□□□□ -1.35
VPS39-202ENST00000348544 TRMT61AQ96FX7 289 aaKnown RBP6.6□□□□□ -1.35
VPS39-202ENST00000348544 C1orf74Q96LT6 269 aa6.6□□□□□ -1.35
VPS39-202ENST00000348544 SMIM14Q96QK8 99 aa6.6□□□□□ -1.35
VPS39-202ENST00000348544 SRRQ9GZT4 340 aa6.6□□□□□ -1.35
VPS39-202ENST00000348544 TIGARQ9NQ88 270 aa6.6□□□□□ -1.35
VPS39-202ENST00000348544 TMEM184CQ9NVA4 438 aa6.6□□□□□ -1.35
VPS39-202ENST00000348544 MAT2BQ9NZL9 334 aa6.6□□□□□ -1.35
VPS39-202ENST00000348544 SPASTQ9UBP0 616 aa6.6□□□□□ -1.35
VPS39-202ENST00000348544 TSR3Q9UJK0 312 aaKnown RBP6.6□□□□□ -1.35
VPS39-202ENST00000348544 VPS4AQ9UN37 437 aa6.6□□□□□ -1.35
VPS39-202ENST00000348544 SLC6A14Q9UN76 642 aa6.6□□□□□ -1.35
VPS39-202ENST00000348544 SAMD4AQ9UPU9 718 aaKnown RBP6.6□□□□□ -1.35
VPS39-202ENST00000348544 CFL2Q9Y281 166 aa6.6□□□□□ -1.35
VPS39-202ENST00000348544 KLK4Q9Y5K2 254 aa6.6□□□□□ -1.35
VPS39-202ENST00000348544 DNAJC25-GNG10A0A024R161 153 aa6.6□□□□□ -1.35
VPS39-202ENST00000348544 B8ZZF3 427 aa6.6□□□□□ -1.35
VPS39-202ENST00000348544 WNT9AO14904 365 aa6.6□□□□□ -1.35
VPS39-202ENST00000348544 SHOXO15266 292 aa6.6□□□□□ -1.35
VPS39-202ENST00000348544 CCNDBP1O95273 360 aa6.6□□□□□ -1.35
VPS39-202ENST00000348544 MYCP01106 439 aaPredicted RBP6.6□□□□□ -1.35
VPS39-202ENST00000348544 FABP3P05413 133 aa6.6□□□□□ -1.35
VPS39-202ENST00000348544 GABRB1P18505 474 aa6.6□□□□□ -1.35
VPS39-202ENST00000348544 UQCRC1P31930 480 aa6.6□□□□□ -1.35
VPS39-202ENST00000348544 GGT2P36268 569 aa6.6□□□□□ -1.35
VPS39-202ENST00000348544 NUDT1P36639 197 aa6.6□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms