RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 MAP4K5Q9Y4K4 846 aa9.87□□□□□ -0.83
USP54-201ENST00000339859 COPG1Q9Y678 874 aaKnown RBP9.87□□□□□ -0.83
USP54-201ENST00000339859 A8MT66 165 aa9.87□□□□□ -0.83
USP54-201ENST00000339859 TRIM38O00635 465 aa9.87□□□□□ -0.83
USP54-201ENST00000339859 PDSS1Q5T2R2 415 aa9.87□□□□□ -0.83
USP54-201ENST00000339859 PSAPL1Q6NUJ1 521 aa9.87□□□□□ -0.83
USP54-201ENST00000339859 DEF8Q6ZN54 512 aa9.87□□□□□ -0.83
USP54-201ENST00000339859 ARHGAP12Q8IWW6 846 aa9.87□□□□□ -0.83
USP54-201ENST00000339859 PLPP6Q8IY26 295 aa9.87□□□□□ -0.83
USP54-201ENST00000339859 EID2Q8N6I1 236 aa9.87□□□□□ -0.83
USP54-201ENST00000339859 XAGE5Q8WWM1 108 aa9.87□□□□□ -0.83
USP54-201ENST00000339859 BTBD9Q96Q07 612 aa9.87□□□□□ -0.83
USP54-201ENST00000339859 FBRSL1Q9HCM7 1045 aaKnown RBP9.87□□□□□ -0.83
USP54-201ENST00000339859 SEC14L3Q9UDX4 400 aa9.87□□□□□ -0.83
USP54-201ENST00000339859 MAGEL2Q9UJ55 1249 aa9.87□□□□□ -0.83
USP54-201ENST00000339859 UBOX5O94941 541 aa9.87□□□□□ -0.83
USP54-201ENST00000339859 UGT2B15P54855 530 aa9.87□□□□□ -0.83
USP54-201ENST00000339859 KHDRBS1Q07666 443 aaKnown RBP eCLIP9.87□□□□□ -0.83
USP54-201ENST00000339859 MTAPQ13126 283 aa9.87□□□□□ -0.83
USP54-201ENST00000339859 KHDRBS2Q5VWX1 349 aaKnown RBP9.87□□□□□ -0.83
USP54-201ENST00000339859 GALNT18Q6P9A2 607 aa9.87□□□□□ -0.83
USP54-201ENST00000339859 SUSD1Q6UWL2 747 aa9.87□□□□□ -0.83
USP54-201ENST00000339859 RANBP3LQ86VV4 465 aaPredicted RBP9.87□□□□□ -0.83
USP54-201ENST00000339859 RAB43Q86YS6 212 aa9.87□□□□□ -0.83
USP54-201ENST00000339859 PIK3C3Q8NEB9 887 aa9.87□□□□□ -0.83
USP54-201ENST00000339859 FATE1Q969F0 183 aa9.87□□□□□ -0.83
USP54-201ENST00000339859 ESAMQ96AP7 390 aa9.87□□□□□ -0.83
USP54-201ENST00000339859 DUSP26Q9BV47 211 aa9.87□□□□□ -0.83
USP54-201ENST00000339859 LTB4R2Q9NPC1 389 aa9.87□□□□□ -0.83
USP54-201ENST00000339859 PRTFDC1Q9NRG1 225 aa9.87□□□□□ -0.83
USP54-201ENST00000339859 SAMD4AQ9UPU9 718 aaKnown RBP9.87□□□□□ -0.83
USP54-201ENST00000339859 CXorf49A8MYA2 514 aaPredicted RBP9.86□□□□□ -0.83
USP54-201ENST00000339859 KLK1P06870 262 aa9.86□□□□□ -0.83
USP54-201ENST00000339859 FNTBP49356 437 aa9.86□□□□□ -0.83
USP54-201ENST00000339859 RACK1P63244 317 aaKnown RBP9.86□□□□□ -0.83
USP54-201ENST00000339859 GBX1Q14549 363 aa9.86□□□□□ -0.83
USP54-201ENST00000339859 TMEM52BQ4KMG9 183 aa9.86□□□□□ -0.83
USP54-201ENST00000339859 DCBLD1Q8N8Z6 715 aa9.86□□□□□ -0.83
USP54-201ENST00000339859 GPR151Q8TDV0 419 aa9.86□□□□□ -0.83
USP54-201ENST00000339859 JPH3Q8WXH2 748 aaPredicted RBP9.86□□□□□ -0.83
USP54-201ENST00000339859 UTS2RQ9UKP6 389 aa9.86□□□□□ -0.83
USP54-201ENST00000339859 AQP9O43315 295 aa9.86□□□□□ -0.83
USP54-201ENST00000339859 DNAJA2O60884 412 aa9.86□□□□□ -0.83
USP54-201ENST00000339859 PRPS1L1P21108 318 aa9.86□□□□□ -0.83
USP54-201ENST00000339859 UBAP2LQ14157 1087 aaKnown RBP9.86□□□□□ -0.83
USP54-201ENST00000339859 GRM7Q14831 915 aa9.86□□□□□ -0.83
USP54-201ENST00000339859 TIGD2Q4W5G0 525 aa9.86□□□□□ -0.83
USP54-201ENST00000339859 TRIM61Q5EBN2 209 aa9.86□□□□□ -0.83
USP54-201ENST00000339859 TCHHL1Q5QJ38 904 aaPredicted RBP9.86□□□□□ -0.83
USP54-201ENST00000339859 IYDQ6PHW0 289 aa9.86□□□□□ -0.83
USP54-201ENST00000339859 MACC1Q6ZN28 852 aa9.86□□□□□ -0.83
USP54-201ENST00000339859 SPEM1Q8N4L4 309 aa9.86□□□□□ -0.83
USP54-201ENST00000339859 DPP10Q8N608 796 aa9.86□□□□□ -0.83
USP54-201ENST00000339859 CSNK1A1LQ8N752 337 aa9.86□□□□□ -0.83
USP54-201ENST00000339859 OR2A12Q8NGT7 310 aa9.86□□□□□ -0.83
USP54-201ENST00000339859 APOL4Q9BPW4 351 aa9.86□□□□□ -0.83
USP54-201ENST00000339859 RTKNQ9BST9 563 aa9.86□□□□□ -0.83
USP54-201ENST00000339859 ZSCAN32Q9NX65 697 aa9.86□□□□□ -0.83
USP54-201ENST00000339859 HCN2Q9UL51 889 aa9.86□□□□□ -0.83
USP54-201ENST00000339859 MAGEB17A8MXT2 336 aa9.86□□□□□ -0.83
USP54-201ENST00000339859 E7EQ34 232 aa9.86□□□□□ -0.83
USP54-201ENST00000339859 EDF1O60869 148 aaKnown RBP9.86□□□□□ -0.83
USP54-201ENST00000339859 B4GALT2O60909 372 aa9.86□□□□□ -0.83
USP54-201ENST00000339859 UGT2B17O75795 530 aa9.86□□□□□ -0.83
USP54-201ENST00000339859 GSNP06396 782 aa9.86□□□□□ -0.83
USP54-201ENST00000339859 C1GALT1C1LP0DN25 315 aa9.86□□□□□ -0.83
USP54-201ENST00000339859 DMTNQ08495 405 aa9.86□□□□□ -0.83
USP54-201ENST00000339859 TGFBIQ15582 683 aa9.86□□□□□ -0.83
USP54-201ENST00000339859 KDELC1Q6UW63 502 aa9.86□□□□□ -0.83
USP54-201ENST00000339859 USP53Q70EK8 1073 aa9.86□□□□□ -0.83
USP54-201ENST00000339859 CAND1Q86VP6 1230 aaKnown RBP9.86□□□□□ -0.83
USP54-201ENST00000339859 PEX5LQ8IYB4 626 aa9.86□□□□□ -0.83
USP54-201ENST00000339859 UTP15Q8TED0 518 aaKnown RBP9.86□□□□□ -0.83
USP54-201ENST00000339859 C5orf34Q96MH7 638 aa9.86□□□□□ -0.83
USP54-201ENST00000339859 RERGLQ9H628 205 aa9.86□□□□□ -0.83
USP54-201ENST00000339859 TMEM184CQ9NVA4 438 aa9.86□□□□□ -0.83
USP54-201ENST00000339859 KIF13BQ9NQT8 1826 aa9.86□□□□□ -0.83
USP54-201ENST00000339859 WASH3PC4AMC7 463 aa9.86□□□□□ -0.83
USP54-201ENST00000339859 PROCP04070 461 aa9.86□□□□□ -0.83
USP54-201ENST00000339859 CD68P34810 354 aaPredicted RBP9.86□□□□□ -0.83
USP54-201ENST00000339859 SGSHP51688 502 aa9.86□□□□□ -0.83
USP54-201ENST00000339859 NFE2L1Q14494 772 aa9.86□□□□□ -0.83
USP54-201ENST00000339859 PDZD3Q86UT5 571 aa9.86□□□□□ -0.83
USP54-201ENST00000339859 COMMD2Q86X83 199 aa9.86□□□□□ -0.83
USP54-201ENST00000339859 SLC44A3Q8N4M1 653 aa9.86□□□□□ -0.83
USP54-201ENST00000339859 KLHL6Q8WZ60 621 aa9.86□□□□□ -0.83
USP54-201ENST00000339859 ARRDC3Q96B67 414 aa9.86□□□□□ -0.83
USP54-201ENST00000339859 GATA5Q9BWX5 397 aaPredicted RBP9.86□□□□□ -0.83
USP54-201ENST00000339859 MUC13Q9H3R2 512 aa9.86□□□□□ -0.83
USP54-201ENST00000339859 PELI2Q9HAT8 420 aa9.86□□□□□ -0.83
USP54-201ENST00000339859 SERINC1Q9NRX5 453 aa9.86□□□□□ -0.83
USP54-201ENST00000339859 ATXN10Q9UBB4 475 aa9.86□□□□□ -0.83
USP54-201ENST00000339859 NR2F6P10588 404 aa9.86□□□□□ -0.83
USP54-201ENST00000339859 SPIBQ01892 262 aa9.86□□□□□ -0.83
USP54-201ENST00000339859 NRROSQ86YC3 692 aa9.86□□□□□ -0.83
USP54-201ENST00000339859 GLIS1Q8NBF1 620 aa9.86□□□□□ -0.83
USP54-201ENST00000339859 PLA2G15Q8NCC3 412 aa9.86□□□□□ -0.83
USP54-201ENST00000339859 NACC2Q96BF6 587 aa9.86□□□□□ -0.83
USP54-201ENST00000339859 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP9.86□□□□□ -0.831e-6■■■■□ 22.8
USP54-201ENST00000339859 CRISPLD1Q9H336 500 aa9.86□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms