RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 RNF44Q7L0R7 432 aa18.67■□□□□ 0.58
LIME1-201ENST00000309546 OVCH1Q7RTY7 1134 aa18.67■□□□□ 0.58
LIME1-201ENST00000309546 HPS6Q86YV9 775 aa18.67■□□□□ 0.58
LIME1-201ENST00000309546 REXO1L1PQ8IX06 675 aa18.67■□□□□ 0.58
LIME1-201ENST00000309546 OR4N4Q8N0Y3 316 aa18.67■□□□□ 0.58
LIME1-201ENST00000309546 AGGF1Q8N302 714 aaeCLIP18.67■□□□□ 0.58
LIME1-201ENST00000309546 NAT8LQ8N9F0 302 aa18.67■□□□□ 0.58
LIME1-201ENST00000309546 PPFIBP2Q8ND30 876 aa18.67■□□□□ 0.58
LIME1-201ENST00000309546 GIMAP7Q8NHV1 300 aa18.67■□□□□ 0.58
LIME1-201ENST00000309546 ACTRT1Q8TDG2 376 aa18.67■□□□□ 0.58
LIME1-201ENST00000309546 PKP4Q99569 1192 aa18.67■□□□□ 0.58
LIME1-201ENST00000309546 MRPS30Q9NP92 439 aaKnown RBP18.67■□□□□ 0.58
LIME1-201ENST00000309546 STOX2Q9P2F5 926 aaPredicted RBP18.67■□□□□ 0.58
LIME1-201ENST00000309546 ANKMY1Q9P2S6 941 aa18.67■□□□□ 0.58
LIME1-201ENST00000309546 TAC3Q9UHF0 121 aa18.67■□□□□ 0.58
LIME1-201ENST00000309546 RELNP78509 3460 aa18.67■□□□□ 0.58
LIME1-201ENST00000309546 HEATR5BQ9P2D3 2071 aa18.67■□□□□ 0.58
LIME1-201ENST00000309546 HECTD1Q9ULT8 2610 aa18.67■□□□□ 0.58
LIME1-201ENST00000309546 MDC1Q14676 2089 aaKnown RBP18.66■□□□□ 0.58
LIME1-201ENST00000309546 HYKKA2RU49 373 aa18.66■□□□□ 0.58
LIME1-201ENST00000309546 FITM1A5D6W6 292 aa18.66■□□□□ 0.58
LIME1-201ENST00000309546 AGPSO00116 658 aa18.66■□□□□ 0.58
LIME1-201ENST00000309546 MYO1CO00159 1063 aa18.66■□□□□ 0.58
LIME1-201ENST00000309546 ALPPP05187 535 aa18.66■□□□□ 0.58
LIME1-201ENST00000309546 ERGP11308 486 aa18.66■□□□□ 0.58
LIME1-201ENST00000309546 GNLYP22749 145 aa18.66■□□□□ 0.58
LIME1-201ENST00000309546 MAGEA3P43357 314 aa18.66■□□□□ 0.58
LIME1-201ENST00000309546 PNLIPRP1P54315 467 aa18.66■□□□□ 0.58
LIME1-201ENST00000309546 MYBPC3Q14896 1274 aa18.66■□□□□ 0.58
LIME1-201ENST00000309546 INPP5JQ15735 1006 aaPredicted RBP18.66■□□□□ 0.58
LIME1-201ENST00000309546 ZNF549Q6P9A3 640 aa18.66■□□□□ 0.58
LIME1-201ENST00000309546 PPIL6Q8IXY8 311 aa18.66■□□□□ 0.58
LIME1-201ENST00000309546 FAM26EQ8N5C1 309 aa18.66■□□□□ 0.58
LIME1-201ENST00000309546 Q8NA96 180 aa18.66■□□□□ 0.58
LIME1-201ENST00000309546 CALML6Q8TD86 181 aa18.66■□□□□ 0.58
LIME1-201ENST00000309546 COL26A1Q96A83 441 aa18.66■□□□□ 0.58
LIME1-201ENST00000309546 PNPLA2Q96AD5 504 aa18.66■□□□□ 0.58
LIME1-201ENST00000309546 SPSB2Q99619 263 aa18.66■□□□□ 0.58
LIME1-201ENST00000309546 ZFYVE21Q9BQ24 234 aa18.66■□□□□ 0.58
LIME1-201ENST00000309546 WDR54Q9H977 334 aa18.66■□□□□ 0.58
LIME1-201ENST00000309546 ATP13A2Q9NQ11 1180 aa18.66■□□□□ 0.58
LIME1-201ENST00000309546 TRMT1Q9NXH9 659 aaKnown RBP18.66■□□□□ 0.58
LIME1-201ENST00000309546 C5AR2Q9P296 337 aa18.66■□□□□ 0.58
LIME1-201ENST00000309546 FBXL4Q9UKA2 621 aa18.66■□□□□ 0.58
LIME1-201ENST00000309546 NXT1Q9UKK6 140 aaKnown RBP18.66■□□□□ 0.58
LIME1-201ENST00000309546 MAP4K5Q9Y4K4 846 aa18.66■□□□□ 0.58
LIME1-201ENST00000309546 KLK4Q9Y5K2 254 aa18.66■□□□□ 0.58
LIME1-201ENST00000309546 SHANK1Q9Y566 2161 aa18.65■□□□□ 0.58
LIME1-201ENST00000309546 OR2A25A4D2G3 310 aa18.65■□□□□ 0.58
LIME1-201ENST00000309546 ZNF839A8K0R7 811 aa18.65■□□□□ 0.58
LIME1-201ENST00000309546 CYSRT1A8MQ03 144 aa18.65■□□□□ 0.58
LIME1-201ENST00000309546 ZSCAN12O43309 604 aa18.65■□□□□ 0.58
LIME1-201ENST00000309546 VPS26AO75436 327 aa18.65■□□□□ 0.58
LIME1-201ENST00000309546 MED26O95402 600 aa18.65■□□□□ 0.58
LIME1-201ENST00000309546 ALBP02768 609 aa18.65■□□□□ 0.58
LIME1-201ENST00000309546 MMP11P24347 488 aa18.65■□□□□ 0.58
LIME1-201ENST00000309546 ITGA3P26006 1051 aa18.65■□□□□ 0.58
LIME1-201ENST00000309546 ARHGAP19Q14CB8 494 aa18.65■□□□□ 0.58
LIME1-201ENST00000309546 HSP90AA5PQ58FG0 334 aa18.65■□□□□ 0.58
LIME1-201ENST00000309546 NEK10Q6ZWH5 1172 aa18.65■□□□□ 0.58
LIME1-201ENST00000309546 LMNTD2Q8IXW0 634 aa18.65■□□□□ 0.58
LIME1-201ENST00000309546 CPNE9Q8IYJ1 553 aa18.65■□□□□ 0.58
LIME1-201ENST00000309546 SERBP1Q8NC51 408 aaKnown RBP eCLIP18.65■□□□□ 0.58
LIME1-201ENST00000309546 GALNT11Q8NCW6 608 aa18.65■□□□□ 0.58
LIME1-201ENST00000309546 KCNJ9Q92806 393 aa18.65■□□□□ 0.58
LIME1-201ENST00000309546 CABS1Q96KC9 395 aa18.65■□□□□ 0.58
LIME1-201ENST00000309546 SIGLEC10Q96LC7 697 aa18.65■□□□□ 0.58
LIME1-201ENST00000309546 GPR21Q99679 349 aa18.65■□□□□ 0.58
LIME1-201ENST00000309546 FAM167BQ9BTA0 163 aa18.65■□□□□ 0.58
LIME1-201ENST00000309546 SLC26A1Q9H2B4 701 aa18.65■□□□□ 0.58
LIME1-201ENST00000309546 ZNF304Q9HCX3 659 aa18.65■□□□□ 0.58
LIME1-201ENST00000309546 IARS2Q9NSE4 1012 aaKnown RBP18.65■□□□□ 0.58
LIME1-201ENST00000309546 ASIC3Q9UHC3 531 aa18.65■□□□□ 0.58
LIME1-201ENST00000309546 FBXO5Q9UKT4 447 aa18.65■□□□□ 0.58
LIME1-201ENST00000309546 SNX12Q9UMY4 172 aa18.65■□□□□ 0.58
LIME1-201ENST00000309546 MED16Q9Y2X0 877 aa18.65■□□□□ 0.58
LIME1-201ENST00000309546 PTPN13Q12923 2485 aa18.64■□□□□ 0.58
LIME1-201ENST00000309546 CCNDBP1O95273 360 aa18.64■□□□□ 0.57
LIME1-201ENST00000309546 SLC16A8O95907 504 aa18.64■□□□□ 0.57
LIME1-201ENST00000309546 ONECUT2O95948 504 aa18.64■□□□□ 0.57
LIME1-201ENST00000309546 MPC1LP0DKB6 136 aa18.64■□□□□ 0.57
LIME1-201ENST00000309546 HSD17B2P37059 387 aa18.64■□□□□ 0.57
LIME1-201ENST00000309546 SRSF1Q07955 248 aaKnown RBP eCLIP18.64■□□□□ 0.573e-6■□□□□ 9.6
LIME1-201ENST00000309546 RBBP7Q16576 425 aa18.64■□□□□ 0.57
LIME1-201ENST00000309546 RNASEH2BQ5TBB1 312 aaKnown RBP18.64■□□□□ 0.57
LIME1-201ENST00000309546 ICE2Q659A1 982 aa18.64■□□□□ 0.57
LIME1-201ENST00000309546 ADCK2Q7Z695 626 aa18.64■□□□□ 0.57
LIME1-201ENST00000309546 KCNMB4Q86W47 210 aa18.64■□□□□ 0.57
LIME1-201ENST00000309546 PRSS58Q8IYP2 241 aa18.64■□□□□ 0.57
LIME1-201ENST00000309546 CD200R1Q8TD46 325 aa18.64■□□□□ 0.57
LIME1-201ENST00000309546 ZNF480Q8WV37 535 aa18.64■□□□□ 0.57
LIME1-201ENST00000309546 PLCD4Q9BRC7 762 aa18.64■□□□□ 0.57
LIME1-201ENST00000309546 DDX47Q9H0S4 455 aaKnown RBP18.64■□□□□ 0.57
LIME1-201ENST00000309546 ZNF552Q9H707 407 aaPredicted RBP18.64■□□□□ 0.57
LIME1-201ENST00000309546 GRPEL1Q9HAV7 217 aa18.64■□□□□ 0.57
LIME1-201ENST00000309546 ENAMQ9NRM1 1142 aa18.64■□□□□ 0.57
LIME1-201ENST00000309546 HS3ST3B1Q9Y662 390 aa18.64■□□□□ 0.57
LIME1-201ENST00000309546 CLEC18AA5D8T8 446 aa18.63■□□□□ 0.57
LIME1-201ENST00000309546 H0YGG7 62 aa18.63■□□□□ 0.57
LIME1-201ENST00000309546 SMAPO00193 183 aa18.63■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms