RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 HEPACAMQ14CZ8 416 aa18.83■□□□□ 0.61
USP48-201ENST00000308271 ANKRD26P1Q6NSI1 321 aa18.83■□□□□ 0.61
USP48-201ENST00000308271 C17orf64Q86WR6 236 aa18.83■□□□□ 0.61
USP48-201ENST00000308271 TP53INP2Q8IXH6 220 aa18.83■□□□□ 0.61
USP48-201ENST00000308271 TMEM125Q96AQ2 219 aa18.83■□□□□ 0.61
USP48-201ENST00000308271 NLE1Q9NVX2 485 aaPredicted RBP18.83■□□□□ 0.61
USP48-201ENST00000308271 ASF1AQ9Y294 204 aa18.83■□□□□ 0.61
USP48-201ENST00000308271 A0A096LPI6 279 aa18.83■□□□□ 0.6
USP48-201ENST00000308271 IFI30P13284 250 aa18.83■□□□□ 0.6
USP48-201ENST00000308271 AKR1D1P51857 326 aa18.83■□□□□ 0.6
USP48-201ENST00000308271 CDKN2DP55273 166 aa18.83■□□□□ 0.6
USP48-201ENST00000308271 NCS1P62166 190 aa18.83■□□□□ 0.6
USP48-201ENST00000308271 RPP38P78345 283 aaKnown RBP18.83■□□□□ 0.6
USP48-201ENST00000308271 GANABQ14697 944 aaKnown RBP18.83■□□□□ 0.6
USP48-201ENST00000308271 GSTO2Q9H4Y5 243 aa18.83■□□□□ 0.6
USP48-201ENST00000308271 SMIM18P0DKX4 95 aa18.83■□□□□ 0.6
USP48-201ENST00000308271 FDXRP22570 491 aa18.83■□□□□ 0.6
USP48-201ENST00000308271 GPR1P46091 355 aa18.83■□□□□ 0.6
USP48-201ENST00000308271 SREBF2Q12772 1141 aa18.83■□□□□ 0.6
USP48-201ENST00000308271 ZNF367Q7RTV3 350 aa18.83■□□□□ 0.6
USP48-201ENST00000308271 NPWQ8N729 165 aa18.83■□□□□ 0.6
USP48-201ENST00000308271 CEP295NLQ96MC4 621 aa18.83■□□□□ 0.6
USP48-201ENST00000308271 C3orf14Q9HBI5 128 aa18.83■□□□□ 0.6
USP48-201ENST00000308271 MRPL17Q9NRX2 175 aaKnown RBP18.83■□□□□ 0.6
USP48-201ENST00000308271 TMEM45AQ9NWC5 275 aa18.83■□□□□ 0.6
USP48-201ENST00000308271 WNT9AO14904 365 aa18.82■□□□□ 0.6
USP48-201ENST00000308271 IFNA7P01567 189 aa18.82■□□□□ 0.6
USP48-201ENST00000308271 GPX3P22352 226 aa18.82■□□□□ 0.6
USP48-201ENST00000308271 DCDC1P59894 354 aa18.82■□□□□ 0.6
USP48-201ENST00000308271 ST3GAL4Q11206 333 aa18.82■□□□□ 0.6
USP48-201ENST00000308271 SPARTQ8N0X7 666 aa18.82■□□□□ 0.6
USP48-201ENST00000308271 COL26A1Q96A83 441 aa18.82■□□□□ 0.6
USP48-201ENST00000308271 MCMBPQ9BTE3 642 aa18.82■□□□□ 0.6
USP48-201ENST00000308271 TAS2R9Q9NYW1 312 aa18.82■□□□□ 0.6
USP48-201ENST00000308271 CPQQ9Y646 472 aa18.82■□□□□ 0.6
USP48-201ENST00000308271 LRRC14BA6NHZ5 514 aa18.82■□□□□ 0.6
USP48-201ENST00000308271 CENPBD1B2RD01 187 aa18.82■□□□□ 0.6
USP48-201ENST00000308271 OPN1SWP03999 348 aa18.82■□□□□ 0.6
USP48-201ENST00000308271 SRPRAP08240 638 aaKnown RBP18.82■□□□□ 0.6
USP48-201ENST00000308271 ACVRL1P37023 503 aa18.82■□□□□ 0.6
USP48-201ENST00000308271 ALDH3B2P48448 385 aa18.82■□□□□ 0.6
USP48-201ENST00000308271 ZBTB6Q15916 424 aa18.82■□□□□ 0.6
USP48-201ENST00000308271 MOB2Q70IA6 237 aa18.82■□□□□ 0.6
USP48-201ENST00000308271 FAM220AQ7Z4H9 259 aa18.82■□□□□ 0.6
USP48-201ENST00000308271 CTU1Q7Z7A3 348 aaKnown RBP18.82■□□□□ 0.6
USP48-201ENST00000308271 ZSCAN2Q7Z7L9 614 aaPredicted RBP18.82■□□□□ 0.6
USP48-201ENST00000308271 METTL25Q8N6Q8 603 aa18.82■□□□□ 0.6
USP48-201ENST00000308271 CHPT1Q8WUD6 406 aa18.82■□□□□ 0.6
USP48-201ENST00000308271 OLAHQ9NV23 265 aa18.82■□□□□ 0.6
USP48-201ENST00000308271 TMEM248Q9NWD8 314 aa18.82■□□□□ 0.6
USP48-201ENST00000308271 CDRT1O95170 752 aa18.82■□□□□ 0.6
USP48-201ENST00000308271 ATF6P18850 670 aa18.82■□□□□ 0.6
USP48-201ENST00000308271 ZNF10P21506 573 aaPredicted RBP18.82■□□□□ 0.6
USP48-201ENST00000308271 CD68P34810 354 aaPredicted RBP18.82■□□□□ 0.6
USP48-201ENST00000308271 GDF5P43026 501 aa18.82■□□□□ 0.6
USP48-201ENST00000308271 PTPRCAPQ14761 206 aa18.82■□□□□ 0.6
USP48-201ENST00000308271 ERMAPQ96PL5 475 aaPredicted RBP18.82■□□□□ 0.6
USP48-201ENST00000308271 SLC30A3Q99726 388 aa18.82■□□□□ 0.6
USP48-201ENST00000308271 AIF1LQ9BQI0 150 aa18.82■□□□□ 0.6
USP48-201ENST00000308271 ASPNQ9BXN1 380 aa18.82■□□□□ 0.6
USP48-201ENST00000308271 HSPB11Q9Y547 144 aa18.82■□□□□ 0.6
USP48-201ENST00000308271 ANKRD66B4E2M5 251 aa18.81■□□□□ 0.6
USP48-201ENST00000308271 SYN3O14994 580 aa18.81■□□□□ 0.6
USP48-201ENST00000308271 CNTN5O94779 1100 aa18.81■□□□□ 0.6
USP48-201ENST00000308271 OXSR1O95747 527 aaPredicted RBP18.81■□□□□ 0.6
USP48-201ENST00000308271 ATF4P18848 351 aaPredicted RBP18.81■□□□□ 0.6
USP48-201ENST00000308271 AP3S2P59780 193 aa18.81■□□□□ 0.6
USP48-201ENST00000308271 KCNA10Q16322 511 aa18.81■□□□□ 0.6
USP48-201ENST00000308271 PRSS48Q7RTY5 328 aa18.81■□□□□ 0.6
USP48-201ENST00000308271 CCDC36Q8IYA8 594 aa18.81■□□□□ 0.6
USP48-201ENST00000308271 ACAT2Q9BWD1 397 aa18.81■□□□□ 0.6
USP48-201ENST00000308271 GPN2Q9H9Y4 310 aaPredicted RBP18.81■□□□□ 0.6
USP48-201ENST00000308271 TIGARQ9NQ88 270 aa18.81■□□□□ 0.6
USP48-201ENST00000308271 CMAHPQ9Y471 501 aa18.81■□□□□ 0.6
USP48-201ENST00000308271 TCRBV5S1A1TA0A578 114 aa18.81■□□□□ 0.6
USP48-201ENST00000308271 PCDH7O60245 1069 aa18.81■□□□□ 0.6
USP48-201ENST00000308271 MAFKO60675 156 aa18.81■□□□□ 0.6
USP48-201ENST00000308271 OXTRP30559 389 aa18.81■□□□□ 0.6
USP48-201ENST00000308271 AP1S2P56377 157 aa18.81■□□□□ 0.6
USP48-201ENST00000308271 GHRHRQ02643 423 aa18.81■□□□□ 0.6
USP48-201ENST00000308271 RAET1GQ6H3X3 334 aa18.81■□□□□ 0.6
USP48-201ENST00000308271 LARP4Q71RC2 724 aaKnown RBP eCLIP18.81■□□□□ 0.63e-6■■■■□ 21.8
USP48-201ENST00000308271 ZNF534Q76KX8 674 aa18.81■□□□□ 0.6
USP48-201ENST00000308271 TSPYL5Q86VY4 417 aaPredicted RBP18.81■□□□□ 0.6
USP48-201ENST00000308271 CCDC28AQ8IWP9 274 aa18.81■□□□□ 0.6
USP48-201ENST00000308271 CMTM7Q96FZ5 175 aa18.81■□□□□ 0.6
USP48-201ENST00000308271 ART5Q96L15 291 aa18.81■□□□□ 0.6
USP48-201ENST00000308271 FAM83DQ9H4H8 585 aa18.81■□□□□ 0.6
USP48-201ENST00000308271 POLE3Q9NRF9 147 aa18.81■□□□□ 0.6
USP48-201ENST00000308271 FCF1Q9Y324 198 aaKnown RBP18.81■□□□□ 0.6
USP48-201ENST00000308271 HCN4Q9Y3Q4 1203 aa18.81■□□□□ 0.6
USP48-201ENST00000308271 PCDH8O95206 1070 aa18.81■□□□□ 0.6
USP48-201ENST00000308271 GLUD1P00367 558 aa18.81■□□□□ 0.6
USP48-201ENST00000308271 IFNGP01579 166 aa18.81■□□□□ 0.6
USP48-201ENST00000308271 PEPDP12955 493 aa18.81■□□□□ 0.6
USP48-201ENST00000308271 TLX1P31314 330 aaPredicted RBP18.81■□□□□ 0.6
USP48-201ENST00000308271 PIK3CBP42338 1070 aa18.81■□□□□ 0.6
USP48-201ENST00000308271 SSR2P43308 183 aa18.81■□□□□ 0.6
USP48-201ENST00000308271 MAGEA3P43357 314 aa18.81■□□□□ 0.6
USP48-201ENST00000308271 USP41Q3LFD5 358 aa18.81■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms