RNA–Protein interactions for RNA: ENST00000302303.5

RFX3-201, Transcript of regulatory factor X3, humanhuman

TSL 1 (best) BASIC

Gene RFX3, Length 1,522 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3-201ENST00000302303 WDR74Q6RFH5 385 aaPredicted RBP9.14□□□□□ -0.95
RFX3-201ENST00000302303 SPESP1Q6UW49 350 aa9.14□□□□□ -0.95
RFX3-201ENST00000302303 FRMD7Q6ZUT3 714 aa9.14□□□□□ -0.95
RFX3-201ENST00000302303 LRRC70Q7Z2Q7 622 aa9.14□□□□□ -0.95
RFX3-201ENST00000302303 TRIM73Q86UV7 250 aa9.14□□□□□ -0.95
RFX3-201ENST00000302303 FAM129CQ86XR2 697 aa9.14□□□□□ -0.95
RFX3-201ENST00000302303 NUDCD3Q8IVD9 361 aa9.14□□□□□ -0.95
RFX3-201ENST00000302303 TEX9Q8N6V9 391 aa9.14□□□□□ -0.95
RFX3-201ENST00000302303 CCDC63Q8NA47 563 aa9.14□□□□□ -0.95
RFX3-201ENST00000302303 DEFB124Q8NES8 71 aa9.14□□□□□ -0.95
RFX3-201ENST00000302303 ABHD11Q8NFV4 315 aa9.14□□□□□ -0.95
RFX3-201ENST00000302303 OR10G6Q8NH81 332 aa9.14□□□□□ -0.95
RFX3-201ENST00000302303 CKAP2Q8WWK9 683 aa9.14□□□□□ -0.95
RFX3-201ENST00000302303 ZNF75CPQ92670 426 aaPredicted RBP9.14□□□□□ -0.95
RFX3-201ENST00000302303 CCDC126Q96EE4 140 aa9.14□□□□□ -0.95
RFX3-201ENST00000302303 WDR34Q96EX3 536 aa9.14□□□□□ -0.95
RFX3-201ENST00000302303 MED8Q96G25 268 aa9.14□□□□□ -0.95
RFX3-201ENST00000302303 SORT1Q99523 831 aa9.14□□□□□ -0.95
RFX3-201ENST00000302303 DRC3Q9H069 523 aa9.14□□□□□ -0.95
RFX3-201ENST00000302303 LRRN3Q9H3W5 708 aa9.14□□□□□ -0.95
RFX3-201ENST00000302303 STN1Q9H668 368 aaKnown RBP9.14□□□□□ -0.95
RFX3-201ENST00000302303 CCDC177Q9NQR7 707 aaPredicted RBP9.14□□□□□ -0.95
RFX3-201ENST00000302303 DNAJC11Q9NVH1 559 aa9.14□□□□□ -0.95
RFX3-201ENST00000302303 KLHL20Q9Y2M5 609 aa9.14□□□□□ -0.95
RFX3-201ENST00000302303 TNPO3Q9Y5L0 923 aaKnown RBP9.14□□□□□ -0.95
RFX3-201ENST00000302303 ENTPD2Q9Y5L3 495 aa9.14□□□□□ -0.95
RFX3-201ENST00000302303 SNRNP200O75643 2136 aaKnown RBP9.13□□□□□ -0.95
RFX3-201ENST00000302303 IGHV5-51A0A0C4DH38 117 aa9.13□□□□□ -0.95
RFX3-201ENST00000302303 C2orf74A8MZ97 194 aa9.13□□□□□ -0.95
RFX3-201ENST00000302303 ISM1B1AKI9 464 aa9.13□□□□□ -0.95
RFX3-201ENST00000302303 E7EQ34 232 aa9.13□□□□□ -0.95
RFX3-201ENST00000302303 SLC30A4O14863 429 aa9.13□□□□□ -0.95
RFX3-201ENST00000302303 CAPN5O15484 640 aaPredicted RBP9.13□□□□□ -0.95
RFX3-201ENST00000302303 SUPT7LO94864 414 aa9.13□□□□□ -0.95
RFX3-201ENST00000302303 PVRP15151 417 aa9.13□□□□□ -0.95
RFX3-201ENST00000302303 AMD1P17707 334 aa9.13□□□□□ -0.95
RFX3-201ENST00000302303 CASP2P42575 452 aa9.13□□□□□ -0.95
RFX3-201ENST00000302303 GABRA4P48169 554 aa9.13□□□□□ -0.95
RFX3-201ENST00000302303 DUSP3P51452 185 aaPredicted RBP9.13□□□□□ -0.95
RFX3-201ENST00000302303 CSNK1G2P78368 415 aa9.13□□□□□ -0.95
RFX3-201ENST00000302303 DAB2P98082 770 aa9.13□□□□□ -0.95
RFX3-201ENST00000302303 ZFP36L1Q07352 338 aaKnown RBP9.13□□□□□ -0.95
RFX3-201ENST00000302303 BST1Q10588 318 aa9.13□□□□□ -0.95
RFX3-201ENST00000302303 CDC16Q13042 620 aa9.13□□□□□ -0.95
RFX3-201ENST00000302303 GTF2H2Q13888 395 aa9.13□□□□□ -0.95
RFX3-201ENST00000302303 TRIP6Q15654 476 aaKnown RBP9.13□□□□□ -0.95
RFX3-201ENST00000302303 CHI3L2Q15782 390 aa9.13□□□□□ -0.95
RFX3-201ENST00000302303 PDK4Q16654 411 aa9.13□□□□□ -0.95
RFX3-201ENST00000302303 SLC5A12Q1EHB4 618 aa9.13□□□□□ -0.95
RFX3-201ENST00000302303 INAVAQ3KP66 663 aa9.13□□□□□ -0.95
RFX3-201ENST00000302303 AMZ1Q400G9 498 aa9.13□□□□□ -0.95
RFX3-201ENST00000302303 ARL13AQ5H913 290 aaPredicted RBP9.13□□□□□ -0.95
RFX3-201ENST00000302303 HHATQ5VTY9 493 aa9.13□□□□□ -0.95
RFX3-201ENST00000302303 PRAMEF13Q5VWM6 474 aa9.13□□□□□ -0.95
RFX3-201ENST00000302303 GTF2H2CQ6P1K8 395 aa9.13□□□□□ -0.95
RFX3-201ENST00000302303 LETMD1Q6P1Q0 360 aa9.13□□□□□ -0.95
RFX3-201ENST00000302303 FBXO42Q6P3S6 717 aa9.13□□□□□ -0.95
RFX3-201ENST00000302303 SYVN1Q86TM6 617 aa9.13□□□□□ -0.95
RFX3-201ENST00000302303 OOSP2Q86WS3 158 aa9.13□□□□□ -0.95
RFX3-201ENST00000302303 SLITRK4Q8IW52 837 aa9.13□□□□□ -0.95
RFX3-201ENST00000302303 ZNF740Q8NDX6 193 aa9.13□□□□□ -0.95
RFX3-201ENST00000302303 NETO1Q8TDF5 533 aa9.13□□□□□ -0.95
RFX3-201ENST00000302303 TRPC4APQ8TEL6 797 aa9.13□□□□□ -0.95
RFX3-201ENST00000302303 NCSTNQ92542 709 aa9.13□□□□□ -0.95
RFX3-201ENST00000302303 TRAPPC9Q96Q05 1148 aa9.13□□□□□ -0.95
RFX3-201ENST00000302303 CDK15Q96Q40 435 aa9.13□□□□□ -0.95
RFX3-201ENST00000302303 CDC6Q99741 560 aa9.13□□□□□ -0.95
RFX3-201ENST00000302303 MAP3K3Q99759 626 aa9.13□□□□□ -0.95
RFX3-201ENST00000302303 MIPEPQ99797 713 aa9.13□□□□□ -0.95
RFX3-201ENST00000302303 PAIP2Q9BPZ3 127 aaKnown RBP9.13□□□□□ -0.95
RFX3-201ENST00000302303 NTMT1Q9BV86 223 aa9.13□□□□□ -0.95
RFX3-201ENST00000302303 SEMA6CQ9H3T2 930 aa9.13□□□□□ -0.95
RFX3-201ENST00000302303 EPB41L1Q9H4G0 881 aa9.13□□□□□ -0.95
RFX3-201ENST00000302303 NOL11Q9H8H0 719 aaKnown RBP9.13□□□□□ -0.95
RFX3-201ENST00000302303 IPPKQ9H8X2 491 aa9.13□□□□□ -0.95
RFX3-201ENST00000302303 FAM60AQ9NP50 221 aa9.13□□□□□ -0.95
RFX3-201ENST00000302303 SEMA4BQ9NPR2 832 aaPredicted RBP9.13□□□□□ -0.95
RFX3-201ENST00000302303 INTS9Q9NV88 658 aaKnown RBP9.13□□□□□ -0.95
RFX3-201ENST00000302303 NKIRAS1Q9NYS0 192 aa9.13□□□□□ -0.95
RFX3-201ENST00000302303 OPTCQ9UBM4 332 aa9.13□□□□□ -0.95
RFX3-201ENST00000302303 MID2Q9UJV3 735 aa9.13□□□□□ -0.95
RFX3-201ENST00000302303 PILRAQ9UKJ1 303 aa9.13□□□□□ -0.95
RFX3-201ENST00000302303 ZNF490Q9ULM2 529 aaPredicted RBP9.13□□□□□ -0.95
RFX3-201ENST00000302303 PCDHB11Q9Y5F2 797 aa9.13□□□□□ -0.95
RFX3-201ENST00000302303 PCM1Q15154 2024 aa9.13□□□□□ -0.95
RFX3-201ENST00000302303 WDFY3Q8IZQ1 3526 aa9.12□□□□□ -0.95
RFX3-201ENST00000302303 UNC13CQ8NB66 2214 aa9.12□□□□□ -0.95
RFX3-201ENST00000302303 IGHV5-10-1A0A0J9YXX1 117 aa9.12□□□□□ -0.95
RFX3-201ENST00000302303 OR2A25A4D2G3 310 aa9.12□□□□□ -0.95
RFX3-201ENST00000302303 ZNF839A8K0R7 811 aa9.12□□□□□ -0.95
RFX3-201ENST00000302303 KLF11O14901 512 aa9.12□□□□□ -0.95
RFX3-201ENST00000302303 LCMT2O60294 686 aaKnown RBP9.12□□□□□ -0.95
RFX3-201ENST00000302303 KDM1AO60341 852 aa9.12□□□□□ -0.95
RFX3-201ENST00000302303 NPHS1O60500 1241 aa9.12□□□□□ -0.95
RFX3-201ENST00000302303 CTSVO60911 334 aa9.12□□□□□ -0.95
RFX3-201ENST00000302303 LYPLA1O75608 230 aaPredicted RBP9.12□□□□□ -0.95
RFX3-201ENST00000302303 TBX6O95947 436 aaPredicted RBP9.12□□□□□ -0.95
RFX3-201ENST00000302303 S100BP04271 92 aaPredicted RBP9.12□□□□□ -0.95
RFX3-201ENST00000302303 SERPINE1P05121 402 aa9.12□□□□□ -0.95
RFX3-201ENST00000302303 RPLP0P05388 317 aaKnown RBP9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms