RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 PCP4L1A6NKN8 68 aa13.12□□□□□ -0.31
SKA3-201ENST00000298260 ARNTLO00327 626 aa13.12□□□□□ -0.31
SKA3-201ENST00000298260 GPX5O75715 221 aa13.12□□□□□ -0.31
SKA3-201ENST00000298260 SCELO95171 688 aa13.12□□□□□ -0.31
SKA3-201ENST00000298260 KRT6AP02538 564 aa13.12□□□□□ -0.31
SKA3-201ENST00000298260 KRT6BP04259 564 aa13.12□□□□□ -0.31
SKA3-201ENST00000298260 MMP2P08253 660 aa13.12□□□□□ -0.31
SKA3-201ENST00000298260 POU2F1P14859 743 aa13.12□□□□□ -0.31
SKA3-201ENST00000298260 TNFRSF1BP20333 461 aa13.12□□□□□ -0.31
SKA3-201ENST00000298260 IL12RB1P42701 662 aa13.12□□□□□ -0.31
SKA3-201ENST00000298260 NRIP1P48552 1158 aa13.12□□□□□ -0.31
SKA3-201ENST00000298260 OAZ1P54368 228 aa13.12□□□□□ -0.31
SKA3-201ENST00000298260 LILRA4P59901 499 aa13.12□□□□□ -0.31
SKA3-201ENST00000298260 FCHO2Q0JRZ9 810 aa13.12□□□□□ -0.31
SKA3-201ENST00000298260 SUSD1Q6UWL2 747 aa13.12□□□□□ -0.31
SKA3-201ENST00000298260 STX19Q8N4C7 294 aa13.12□□□□□ -0.31
SKA3-201ENST00000298260 FBXL6Q8N531 539 aa13.12□□□□□ -0.31
SKA3-201ENST00000298260 LRRC52Q8N7C0 313 aa13.12□□□□□ -0.31
SKA3-201ENST00000298260 OR56A4Q8NGH8 313 aa13.12□□□□□ -0.31
SKA3-201ENST00000298260 UTP15Q8TED0 518 aaKnown RBP13.12□□□□□ -0.31
SKA3-201ENST00000298260 TPD52L3Q96J77 140 aa13.12□□□□□ -0.31
SKA3-201ENST00000298260 RIPOR3Q96MK2 946 aa13.12□□□□□ -0.31
SKA3-201ENST00000298260 ZSCAN5AQ9BUG6 496 aa13.12□□□□□ -0.31
SKA3-201ENST00000298260 C1orf109Q9NX04 203 aa13.12□□□□□ -0.31
SKA3-201ENST00000298260 V9GYH0 126 aa13.12□□□□□ -0.31
SKA3-201ENST00000298260 PIRO00625 290 aa13.12□□□□□ -0.31
SKA3-201ENST00000298260 ERN1O75460 977 aaKnown RBP13.12□□□□□ -0.31
SKA3-201ENST00000298260 MYL9P24844 172 aa13.12□□□□□ -0.31
SKA3-201ENST00000298260 SOX3P41225 446 aa13.12□□□□□ -0.31
SKA3-201ENST00000298260 GRIK2Q13002 908 aa13.12□□□□□ -0.31
SKA3-201ENST00000298260 BHLHA9Q7RTU4 235 aa13.12□□□□□ -0.31
SKA3-201ENST00000298260 KLHDC8BQ8IXV7 354 aa13.12□□□□□ -0.31
SKA3-201ENST00000298260 RHEBL1Q8TAI7 183 aa13.12□□□□□ -0.31
SKA3-201ENST00000298260 GFM1Q96RP9 751 aaKnown RBP13.12□□□□□ -0.31
SKA3-201ENST00000298260 CCM2Q9BSQ5 444 aa13.12□□□□□ -0.31
SKA3-201ENST00000298260 AARSD1Q9BTE6 412 aaKnown RBP13.12□□□□□ -0.31
SKA3-201ENST00000298260 AGO3Q9H9G7 860 aaKnown RBP13.12□□□□□ -0.31
SKA3-201ENST00000298260 SMURF1Q9HCE7 757 aa13.12□□□□□ -0.31
SKA3-201ENST00000298260 EVA1BQ9NVM1 165 aa13.12□□□□□ -0.31
SKA3-201ENST00000298260 RLIMQ9NVW2 624 aa13.12□□□□□ -0.31
SKA3-201ENST00000298260 PSORS1C1Q9UIG5 152 aa13.12□□□□□ -0.31
SKA3-201ENST00000298260 COMMD10Q9Y6G5 202 aa13.12□□□□□ -0.31
SKA3-201ENST00000298260 CLCA3PQ9Y6N3 262 aa13.12□□□□□ -0.31
SKA3-201ENST00000298260 MROH6A6NGR9 719 aa13.11□□□□□ -0.31
SKA3-201ENST00000298260 NPPAP01160 153 aa13.11□□□□□ -0.31
SKA3-201ENST00000298260 ATF4P18848 351 aaPredicted RBP13.11□□□□□ -0.31
SKA3-201ENST00000298260 AKT1P31749 480 aa13.11□□□□□ -0.31
SKA3-201ENST00000298260 PTGS2P35354 604 aa13.11□□□□□ -0.31
SKA3-201ENST00000298260 ARHGEF6Q15052 776 aa13.11□□□□□ -0.31
SKA3-201ENST00000298260 CACHD1Q5VU97 1274 aa13.11□□□□□ -0.31
SKA3-201ENST00000298260 PDE12Q6L8Q7 609 aaKnown RBP13.11□□□□□ -0.31
SKA3-201ENST00000298260 BHMTQ93088 406 aa13.11□□□□□ -0.31
SKA3-201ENST00000298260 TMCO6Q96DC7 493 aa13.11□□□□□ -0.31
SKA3-201ENST00000298260 ZFP42Q96MM3 310 aa13.11□□□□□ -0.31
SKA3-201ENST00000298260 OSMRQ99650 979 aa13.11□□□□□ -0.31
SKA3-201ENST00000298260 DPY30Q9C005 99 aa13.11□□□□□ -0.31
SKA3-201ENST00000298260 HEBP1Q9NRV9 189 aa13.11□□□□□ -0.31
SKA3-201ENST00000298260 THUMPD1Q9NXG2 353 aaKnown RBP13.11□□□□□ -0.31
SKA3-201ENST00000298260 ABI2Q9NYB9 513 aaPredicted RBP13.11□□□□□ -0.31
SKA3-201ENST00000298260 LAMA2P24043 3122 aaKnown RBP13.11□□□□□ -0.31
SKA3-201ENST00000298260 FNDC1Q4ZHG4 1894 aaPredicted RBP13.11□□□□□ -0.31
SKA3-201ENST00000298260 PNMA8CA0A1B0GUJ8 204 aa13.11□□□□□ -0.31
SKA3-201ENST00000298260 CCDC182A6NF36 153 aa13.11□□□□□ -0.31
SKA3-201ENST00000298260 B4DXG7 233 aa13.11□□□□□ -0.31
SKA3-201ENST00000298260 B8ZZF3 427 aa13.11□□□□□ -0.31
SKA3-201ENST00000298260 TNFRSF21O75509 655 aa13.11□□□□□ -0.31
SKA3-201ENST00000298260 SOX6P35712 828 aa13.11□□□□□ -0.31
SKA3-201ENST00000298260 KIR2DL3P43628 341 aa13.11□□□□□ -0.31
SKA3-201ENST00000298260 TAF6P49848 677 aa13.11□□□□□ -0.31
SKA3-201ENST00000298260 ARHGDIAP52565 204 aa13.11□□□□□ -0.31
SKA3-201ENST00000298260 CASP9P55211 416 aa13.11□□□□□ -0.31
SKA3-201ENST00000298260 ZXDBP98169 803 aa13.11□□□□□ -0.31
SKA3-201ENST00000298260 ELP6Q0PNE2 266 aa13.11□□□□□ -0.31
SKA3-201ENST00000298260 NFE2L1Q14494 772 aa13.11□□□□□ -0.31
SKA3-201ENST00000298260 PTPRNQ16849 979 aa13.11□□□□□ -0.31
SKA3-201ENST00000298260 CYP27C1Q4G0S4 372 aa13.11□□□□□ -0.31
SKA3-201ENST00000298260 DOK6Q6PKX4 331 aa13.11□□□□□ -0.31
SKA3-201ENST00000298260 PSMG2Q969U7 264 aa13.11□□□□□ -0.31
SKA3-201ENST00000298260 CCDC59Q9P031 241 aaKnown RBP13.11□□□□□ -0.31
SKA3-201ENST00000298260 MALT1Q9UDY8 824 aa13.11□□□□□ -0.31
SKA3-201ENST00000298260 OGDHLQ9ULD0 1010 aa13.11□□□□□ -0.31
SKA3-201ENST00000298260 EFCAB10A6NFE3 127 aa13.1□□□□□ -0.31
SKA3-201ENST00000298260 LRRTM2O43300 516 aa13.1□□□□□ -0.31
SKA3-201ENST00000298260 TSPAN9O75954 239 aa13.1□□□□□ -0.31
SKA3-201ENST00000298260 CDK1P06493 297 aa13.1□□□□□ -0.31
SKA3-201ENST00000298260 PKLRP30613 574 aa13.1□□□□□ -0.31
SKA3-201ENST00000298260 SNTA1Q13424 505 aa13.1□□□□□ -0.31
SKA3-201ENST00000298260 DMC1Q14565 340 aa13.1□□□□□ -0.31
SKA3-201ENST00000298260 TWF2Q6IBS0 349 aaKnown RBP13.1□□□□□ -0.31
SKA3-201ENST00000298260 ARMCX2Q7L311 632 aa13.1□□□□□ -0.31
SKA3-201ENST00000298260 TMC8Q8IU68 726 aa13.1□□□□□ -0.31
SKA3-201ENST00000298260 TIGD4Q8IY51 512 aa13.1□□□□□ -0.31
SKA3-201ENST00000298260 DNAJC22Q8N4W6 341 aa13.1□□□□□ -0.31
SKA3-201ENST00000298260 BRSK1Q8TDC3 778 aa13.1□□□□□ -0.31
SKA3-201ENST00000298260 RMDN1Q96DB5 314 aa13.1□□□□□ -0.31
SKA3-201ENST00000298260 ABCB9Q9NP78 766 aa13.1□□□□□ -0.31
SKA3-201ENST00000298260 CATSPERZQ9NTU4 200 aa13.1□□□□□ -0.31
SKA3-201ENST00000298260 HCN4Q9Y3Q4 1203 aa13.1□□□□□ -0.31
SKA3-201ENST00000298260 GRIP1Q9Y3R0 1128 aa13.1□□□□□ -0.31
SKA3-201ENST00000298260 ZNF236Q9UL36 1845 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms