RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 SCIMPQ6UWF3 145 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 DLK2Q6UY11 383 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 ZNF783Q6ZMS7 281 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 GOLGA7Q7Z5G4 137 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 SERINC5Q86VE9 423 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 SPNS2Q8IVW8 549 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 PEX5LQ8IYB4 626 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 CPNE9Q8IYJ1 553 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 ATG16L2Q8NAA4 619 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 MCOLN3Q8TDD5 553 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 CSGALNACT1Q8TDX6 532 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 TAMM41Q96BW9 452 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 CEP19Q96LK0 163 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 TMEM74Q96NL1 305 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 C2orf49Q9BVC5 232 aaPredicted RBP3.89□□□□□ -1.79
SCN1A-214ENST00000637038 C8orf33Q9H7E9 229 aaPredicted RBP3.89□□□□□ -1.79
SCN1A-214ENST00000637038 KAT8Q9H7Z6 458 aaKnown RBP3.89□□□□□ -1.79
SCN1A-214ENST00000637038 ZNF556Q9HAH1 456 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 NMUR1Q9HB89 426 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 TM9SF3Q9HD45 589 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 POLR3BQ9NW08 1133 aaPredicted RBP3.89□□□□□ -1.79
SCN1A-214ENST00000637038 TRNAU1APQ9NX07 287 aaKnown RBP3.89□□□□□ -1.79
SCN1A-214ENST00000637038 ADPRHL2Q9NX46 363 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 SMPD4Q9NXE4 827 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 ASIC5Q9NY37 505 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 TRPM5Q9NZQ8 1165 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 DKK4Q9UBT3 224 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 GIMAP2Q9UG22 337 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 ENPP5Q9UJA9 477 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 PRG3Q9Y2Y8 225 aaPredicted RBP3.89□□□□□ -1.79
SCN1A-214ENST00000637038 DHRS7Q9Y394 339 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 MSRB2Q9Y3D2 182 aa3.89□□□□□ -1.79
SCN1A-214ENST00000637038 ATG2AQ2TAZ0 1938 aa3.88□□□□□ -1.79
SCN1A-214ENST00000637038 ISPDA4D126 451 aa3.88□□□□□ -1.79
SCN1A-214ENST00000637038 PRSS47A8MTI9 375 aa3.88□□□□□ -1.79
SCN1A-214ENST00000637038 PTGES3LE9PB15 166 aa3.88□□□□□ -1.79
SCN1A-214ENST00000637038 K7EPI3 171 aa3.88□□□□□ -1.79
SCN1A-214ENST00000637038 CBX4O00257 560 aa3.88□□□□□ -1.79
SCN1A-214ENST00000637038 TNFRSF10BO14763 440 aa3.88□□□□□ -1.79
SCN1A-214ENST00000637038 WNT9AO14904 365 aa3.88□□□□□ -1.79
SCN1A-214ENST00000637038 PER2O15055 1255 aa3.88□□□□□ -1.79
SCN1A-214ENST00000637038 KPNA5O15131 536 aa3.88□□□□□ -1.79
SCN1A-214ENST00000637038 ACOX3O15254 700 aa3.88□□□□□ -1.79
SCN1A-214ENST00000637038 FFAR2O15552 330 aa3.88□□□□□ -1.79
SCN1A-214ENST00000637038 MAN1A2O60476 641 aa3.88□□□□□ -1.79
SCN1A-214ENST00000637038 XYLBO75191 536 aa3.88□□□□□ -1.79
SCN1A-214ENST00000637038 MTRF1O75570 445 aaKnown RBP3.88□□□□□ -1.79
SCN1A-214ENST00000637038 CCNDBP1O95273 360 aa3.88□□□□□ -1.79
SCN1A-214ENST00000637038 MED26O95402 600 aa3.88□□□□□ -1.79
SCN1A-214ENST00000637038 ZNF682O95780 498 aa3.88□□□□□ -1.79
SCN1A-214ENST00000637038 PIRTP0C851 137 aa3.88□□□□□ -1.79
SCN1A-214ENST00000637038 G6PDP11413 515 aa3.88□□□□□ -1.79
SCN1A-214ENST00000637038 PCNAP12004 261 aa3.88□□□□□ -1.79
SCN1A-214ENST00000637038 MTHFD2P13995 350 aa3.88□□□□□ -1.79
SCN1A-214ENST00000637038 ZNF182P17025 639 aaPredicted RBP3.88□□□□□ -1.79
SCN1A-214ENST00000637038 RPS3P23396 243 aaKnown RBP eCLIP3.88□□□□□ -1.79
SCN1A-214ENST00000637038 SOX6P35712 828 aa3.88□□□□□ -1.79
SCN1A-214ENST00000637038 FOXA1P55317 472 aa3.88□□□□□ -1.79
SCN1A-214ENST00000637038 TIAL1Q01085 375 aaKnown RBP eCLIP3.88□□□□□ -1.79
SCN1A-214ENST00000637038 GSTM4Q03013 218 aa3.88□□□□□ -1.79
SCN1A-214ENST00000637038 ALFQ53S48 1182 aa3.88□□□□□ -1.79
SCN1A-214ENST00000637038 SGO1Q5FBB7 561 aa3.88□□□□□ -1.79
SCN1A-214ENST00000637038 FGD3Q5JSP0 725 aa3.88□□□□□ -1.79
SCN1A-214ENST00000637038 PAGE3Q5JUK9 113 aa3.88□□□□□ -1.79
SCN1A-214ENST00000637038 ZDHHC20Q5W0Z9 365 aa3.88□□□□□ -1.79
SCN1A-214ENST00000637038 RETSATQ6NUM9 610 aa3.88□□□□□ -1.79
SCN1A-214ENST00000637038 TMEM207Q6UWW9 146 aa3.88□□□□□ -1.79
SCN1A-214ENST00000637038 CCDC81Q6ZN84 652 aa3.88□□□□□ -1.79
SCN1A-214ENST00000637038 GCNT7Q6ZNI0 430 aa3.88□□□□□ -1.79
SCN1A-214ENST00000637038 RNF165Q6ZSG1 346 aa3.88□□□□□ -1.79
SCN1A-214ENST00000637038 ZC3H7AQ8IWR0 971 aaKnown RBP3.88□□□□□ -1.79
SCN1A-214ENST00000637038 DEPDC4Q8N2C3 294 aa3.88□□□□□ -1.79
SCN1A-214ENST00000637038 DTWD1Q8N5C7 304 aa3.88□□□□□ -1.79
SCN1A-214ENST00000637038 ZBTB2Q8N680 514 aa3.88□□□□□ -1.79
SCN1A-214ENST00000637038 SCAIQ8N9R8 606 aa3.88□□□□□ -1.79
SCN1A-214ENST00000637038 TTC16Q8NEE8 873 aa3.88□□□□□ -1.79
SCN1A-214ENST00000637038 VN1R2Q8NFZ6 395 aa3.88□□□□□ -1.79
SCN1A-214ENST00000637038 OR10A6Q8NH74 314 aa3.88□□□□□ -1.79
SCN1A-214ENST00000637038 SKA2Q8WVK7 121 aaPredicted RBP3.88□□□□□ -1.79
SCN1A-214ENST00000637038 OVCA2Q8WZ82 227 aa3.88□□□□□ -1.79
SCN1A-214ENST00000637038 SNX19Q92543 992 aa3.88□□□□□ -1.79
SCN1A-214ENST00000637038 MUL1Q969V5 352 aa3.88□□□□□ -1.79
SCN1A-214ENST00000637038 ACDQ96AP0 544 aa3.88□□□□□ -1.79
SCN1A-214ENST00000637038 TADA1Q96BN2 335 aa3.88□□□□□ -1.79
SCN1A-214ENST00000637038 TBC1D20Q96BZ9 403 aa3.88□□□□□ -1.79
SCN1A-214ENST00000637038 SPATA17Q96L03 361 aa3.88□□□□□ -1.79
SCN1A-214ENST00000637038 CDC6Q99741 560 aa3.88□□□□□ -1.79
SCN1A-214ENST00000637038 CLSTN3Q9BQT9 956 aa3.88□□□□□ -1.79
SCN1A-214ENST00000637038 SPATA9Q9BWV2 254 aa3.88□□□□□ -1.79
SCN1A-214ENST00000637038 KLHL25Q9H0H3 589 aa3.88□□□□□ -1.79
SCN1A-214ENST00000637038 TNFRSF12AQ9NP84 129 aa3.88□□□□□ -1.79
SCN1A-214ENST00000637038 INTS7Q9NVH2 962 aaKnown RBP3.88□□□□□ -1.79
SCN1A-214ENST00000637038 TMLHEQ9NVH6 421 aa3.88□□□□□ -1.79
SCN1A-214ENST00000637038 MIOSQ9NXC5 875 aa3.88□□□□□ -1.79
SCN1A-214ENST00000637038 KCTD5Q9NXV2 234 aa3.88□□□□□ -1.79
SCN1A-214ENST00000637038 GALPQ9UBC7 116 aa3.88□□□□□ -1.79
SCN1A-214ENST00000637038 FKBPLQ9UIM3 349 aa3.88□□□□□ -1.79
SCN1A-214ENST00000637038 METRNQ9UJH8 293 aa3.88□□□□□ -1.79
SCN1A-214ENST00000637038 TDRKHQ9Y2W6 561 aaKnown RBP3.88□□□□□ -1.79
SCN1A-214ENST00000637038 COL4A2P08572 1712 aa3.88□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms