RNA–Protein interactions for RNA: ENST00000627587.2

PDLIM5-223, Transcript of PDZ and LIM domain 5, humanhuman

TSL 2

Gene PDLIM5, Length 1,853 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-223ENST00000627587 KRT72Q14CN4 511 aa9.23□□□□□ -0.93
PDLIM5-223ENST00000627587 TBCCQ15814 346 aa9.23□□□□□ -0.93
PDLIM5-223ENST00000627587 TCHHL1Q5QJ38 904 aaPredicted RBP9.23□□□□□ -0.93
PDLIM5-223ENST00000627587 TPRG1LQ5T0D9 272 aa9.23□□□□□ -0.93
PDLIM5-223ENST00000627587 PRAMEF9Q5VWM5 478 aa9.23□□□□□ -0.93
PDLIM5-223ENST00000627587 TTC23LQ6PF05 361 aa9.23□□□□□ -0.93
PDLIM5-223ENST00000627587 C19orf48Q6RUI8 117 aa9.23□□□□□ -0.93
PDLIM5-223ENST00000627587 GPRIN3Q6ZVF9 776 aa9.23□□□□□ -0.93
PDLIM5-223ENST00000627587 CHSY3Q70JA7 882 aa9.23□□□□□ -0.93
PDLIM5-223ENST00000627587 AMZ2Q86W34 360 aa9.23□□□□□ -0.93
PDLIM5-223ENST00000627587 TRIM69Q86WT6 500 aa9.23□□□□□ -0.93
PDLIM5-223ENST00000627587 TEX9Q8N6V9 391 aa9.23□□□□□ -0.93
PDLIM5-223ENST00000627587 DENND6BQ8NEG7 585 aa9.23□□□□□ -0.93
PDLIM5-223ENST00000627587 TWIST2Q8WVJ9 160 aa9.23□□□□□ -0.93
PDLIM5-223ENST00000627587 ATP6V1E2Q96A05 226 aa9.23□□□□□ -0.93
PDLIM5-223ENST00000627587 MYOCQ99972 504 aa9.23□□□□□ -0.93
PDLIM5-223ENST00000627587 TUBB6Q9BUF5 446 aa9.23□□□□□ -0.93
PDLIM5-223ENST00000627587 CCDC28BQ9BUN5 200 aa9.23□□□□□ -0.93
PDLIM5-223ENST00000627587 DPEP2Q9H4A9 486 aa9.23□□□□□ -0.93
PDLIM5-223ENST00000627587 NOL11Q9H8H0 719 aaKnown RBP9.23□□□□□ -0.93
PDLIM5-223ENST00000627587 PNMA8BQ9ULN7 279 aaPredicted RBP9.23□□□□□ -0.93
PDLIM5-223ENST00000627587 CA5BQ9Y2D0 317 aa9.23□□□□□ -0.93
PDLIM5-223ENST00000627587 TIMM22Q9Y584 194 aa9.23□□□□□ -0.93
PDLIM5-223ENST00000627587 DNMT3AQ9Y6K1 912 aaPredicted RBP9.23□□□□□ -0.93
PDLIM5-223ENST00000627587 A0A1B0GVT2 93 aa9.22□□□□□ -0.93
PDLIM5-223ENST00000627587 ATP6AP2A0A1C7CYW4 349 aa9.22□□□□□ -0.93
PDLIM5-223ENST00000627587 KLHL33A6NCF5 533 aa9.22□□□□□ -0.93
PDLIM5-223ENST00000627587 EIF4E1BA6NMX2 242 aaKnown RBP9.22□□□□□ -0.93
PDLIM5-223ENST00000627587 CACNB4O00305 520 aaPredicted RBP9.22□□□□□ -0.93
PDLIM5-223ENST00000627587 PIP5K1BO14986 540 aa9.22□□□□□ -0.93
PDLIM5-223ENST00000627587 KMOO15229 486 aa9.22□□□□□ -0.93
PDLIM5-223ENST00000627587 PCDHGA12O60330 932 aa9.22□□□□□ -0.93
PDLIM5-223ENST00000627587 ATP6AP2O75787 350 aa9.22□□□□□ -0.93
PDLIM5-223ENST00000627587 FSBPO95073 299 aa9.22□□□□□ -0.93
PDLIM5-223ENST00000627587 C1orf105O95561 183 aa9.22□□□□□ -0.93
PDLIM5-223ENST00000627587 CHEK2O96017 543 aa9.22□□□□□ -0.93
PDLIM5-223ENST00000627587 OTCP00480 354 aa9.22□□□□□ -0.93
PDLIM5-223ENST00000627587 CD27P26842 260 aa9.22□□□□□ -0.93
PDLIM5-223ENST00000627587 BDKRB1P46663 353 aa9.22□□□□□ -0.93
PDLIM5-223ENST00000627587 PIK3CGP48736 1102 aa9.22□□□□□ -0.93
PDLIM5-223ENST00000627587 CLDN2P57739 230 aa9.22□□□□□ -0.93
PDLIM5-223ENST00000627587 PFN3P60673 137 aa9.22□□□□□ -0.93
PDLIM5-223ENST00000627587 RPA4Q13156 261 aa9.22□□□□□ -0.93
PDLIM5-223ENST00000627587 COL28A1Q2UY09 1125 aa9.22□□□□□ -0.93
PDLIM5-223ENST00000627587 NXNQ6DKJ4 435 aa9.22□□□□□ -0.93
PDLIM5-223ENST00000627587 LARP4Q71RC2 724 aaKnown RBP eCLIP9.22□□□□□ -0.93
PDLIM5-223ENST00000627587 EFL1Q7Z2Z2 1120 aaKnown RBP9.22□□□□□ -0.93
PDLIM5-223ENST00000627587 OR4F6Q8NGB9 312 aa9.22□□□□□ -0.93
PDLIM5-223ENST00000627587 CEP70Q8NHQ1 597 aa9.22□□□□□ -0.93
PDLIM5-223ENST00000627587 FBXO27Q8NI29 283 aa9.22□□□□□ -0.93
PDLIM5-223ENST00000627587 HMGCLL1Q8TB92 370 aa9.22□□□□□ -0.93
PDLIM5-223ENST00000627587 PYCR2Q96C36 320 aa9.22□□□□□ -0.93
PDLIM5-223ENST00000627587 C19orf60Q96EN9 201 aa9.22□□□□□ -0.93
PDLIM5-223ENST00000627587 SCARF2Q96GP6 870 aaPredicted RBP9.22□□□□□ -0.93
PDLIM5-223ENST00000627587 BMFQ96LC9 184 aa9.22□□□□□ -0.93
PDLIM5-223ENST00000627587 APOOQ9BUR5 198 aa9.22□□□□□ -0.93
PDLIM5-223ENST00000627587 IPPKQ9H8X2 491 aa9.22□□□□□ -0.93
PDLIM5-223ENST00000627587 MRPL40Q9NQ50 206 aaKnown RBP9.22□□□□□ -0.93
PDLIM5-223ENST00000627587 CIDEBQ9UHD4 219 aa9.22□□□□□ -0.93
PDLIM5-223ENST00000627587 ZNHIT2Q9UHR6 403 aa9.22□□□□□ -0.93
PDLIM5-223ENST00000627587 SLC17A4Q9Y2C5 497 aa9.22□□□□□ -0.93
PDLIM5-223ENST00000627587 ANKRD11Q6UB99 2663 aaPredicted RBP9.22□□□□□ -0.93
PDLIM5-223ENST00000627587 ZFYVE26Q68DK2 2539 aa9.22□□□□□ -0.93
PDLIM5-223ENST00000627587 PTPRBP23467 1997 aa9.21□□□□□ -0.93
PDLIM5-223ENST00000627587 HNRNPCL1O60812 293 aaKnown RBP9.21□□□□□ -0.93
PDLIM5-223ENST00000627587 KATNA1O75449 491 aa9.21□□□□□ -0.93
PDLIM5-223ENST00000627587 DNAJC8O75937 253 aaPredicted RBP9.21□□□□□ -0.93
PDLIM5-223ENST00000627587 SEMA4FO95754 770 aa9.21□□□□□ -0.93
PDLIM5-223ENST00000627587 SLC16A8O95907 504 aa9.21□□□□□ -0.93
PDLIM5-223ENST00000627587 IGHV4-34P06331 123 aa9.21□□□□□ -0.93
PDLIM5-223ENST00000627587 UROSP10746 265 aa9.21□□□□□ -0.93
PDLIM5-223ENST00000627587 HOXB1P14653 301 aaPredicted RBP9.21□□□□□ -0.93
PDLIM5-223ENST00000627587 EPB42P16452 691 aa9.21□□□□□ -0.93
PDLIM5-223ENST00000627587 HNRNPA2B1P22626 353 aaKnown RBP9.21□□□□□ -0.93
PDLIM5-223ENST00000627587 IMPA1P29218 277 aa9.21□□□□□ -0.93
PDLIM5-223ENST00000627587 CSNK1EP49674 416 aaKnown RBP9.21□□□□□ -0.93
PDLIM5-223ENST00000627587 HTR6P50406 440 aa9.21□□□□□ -0.93
PDLIM5-223ENST00000627587 RASSF2P50749 326 aa9.21□□□□□ -0.93
PDLIM5-223ENST00000627587 CCT8P50990 548 aa9.21□□□□□ -0.93
PDLIM5-223ENST00000627587 CCNG1P51959 295 aa9.21□□□□□ -0.93
PDLIM5-223ENST00000627587 BNC1Q01954 994 aa9.21□□□□□ -0.93
PDLIM5-223ENST00000627587 CDC16Q13042 620 aa9.21□□□□□ -0.93
PDLIM5-223ENST00000627587 GRB7Q14451 532 aa9.21□□□□□ -0.93
PDLIM5-223ENST00000627587 KIF19Q2TAC6 998 aa9.21□□□□□ -0.93
PDLIM5-223ENST00000627587 PTCHD3Q3KNS1 767 aa9.21□□□□□ -0.93
PDLIM5-223ENST00000627587 SOWAHCQ53LP3 525 aaPredicted RBP9.21□□□□□ -0.93
PDLIM5-223ENST00000627587 XKR7Q5GH72 579 aa9.21□□□□□ -0.93
PDLIM5-223ENST00000627587 METRNLQ641Q3 311 aa9.21□□□□□ -0.93
PDLIM5-223ENST00000627587 LRRC70Q7Z2Q7 622 aa9.21□□□□□ -0.93
PDLIM5-223ENST00000627587 TMPRSS12Q86WS5 348 aa9.21□□□□□ -0.93
PDLIM5-223ENST00000627587 OR2T11Q8NH01 316 aa9.21□□□□□ -0.93
PDLIM5-223ENST00000627587 ACTRT2Q8TDY3 377 aa9.21□□□□□ -0.93
PDLIM5-223ENST00000627587 ATL1Q8WXF7 558 aa9.21□□□□□ -0.93
PDLIM5-223ENST00000627587 FBXL8Q96CD0 374 aa9.21□□□□□ -0.93
PDLIM5-223ENST00000627587 MARK4Q96L34 752 aa9.21□□□□□ -0.93
PDLIM5-223ENST00000627587 CCDC138Q96M89 665 aa9.21□□□□□ -0.93
PDLIM5-223ENST00000627587 NRTNQ99748 197 aa9.21□□□□□ -0.93
PDLIM5-223ENST00000627587 C6orf106Q9H6K1 298 aaPredicted RBP9.21□□□□□ -0.93
PDLIM5-223ENST00000627587 CAAP1Q9H8G2 361 aa9.21□□□□□ -0.93
PDLIM5-223ENST00000627587 RMI1Q9H9A7 625 aa9.21□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms