RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 NRF1Q16656 503 aa15.27■□□□□ 0.03
CPSF1-213ENST00000620219 TBCELQ5QJ74 424 aa15.27■□□□□ 0.03
CPSF1-213ENST00000620219 PTCRAQ6ISU1 281 aaPredicted RBP15.27■□□□□ 0.03
CPSF1-213ENST00000620219 TMEM132CQ8N3T6 1108 aa15.27■□□□□ 0.03
CPSF1-213ENST00000620219 FBXO30Q8TB52 745 aa15.27■□□□□ 0.03
CPSF1-213ENST00000620219 VPS50Q96JG6 964 aa15.27■□□□□ 0.03
CPSF1-213ENST00000620219 CCDC3Q9BQI4 270 aa15.27■□□□□ 0.03
CPSF1-213ENST00000620219 AHSPQ9NZD4 102 aa15.27■□□□□ 0.03
CPSF1-213ENST00000620219 STOX2Q9P2F5 926 aaPredicted RBP15.27■□□□□ 0.03
CPSF1-213ENST00000620219 PADI4Q9UM07 663 aa15.27■□□□□ 0.03
CPSF1-213ENST00000620219 ANKRD36A6QL64 1941 aa15.27■□□□□ 0.03
CPSF1-213ENST00000620219 SAC3D1A6NKF1 404 aa15.27■□□□□ 0.03
CPSF1-213ENST00000620219 PSMA4P25789 261 aaKnown RBP15.27■□□□□ 0.03
CPSF1-213ENST00000620219 PLPP6Q8IY26 295 aa15.27■□□□□ 0.03
CPSF1-213ENST00000620219 KRTCAP2Q8N6L1 136 aa15.27■□□□□ 0.03
CPSF1-213ENST00000620219 AIF1LQ9BQI0 150 aa15.27■□□□□ 0.03
CPSF1-213ENST00000620219 INTS7Q9NVH2 962 aaKnown RBP15.27■□□□□ 0.03
CPSF1-213ENST00000620219 GFRA2O00451 464 aa15.26■□□□□ 0.03
CPSF1-213ENST00000620219 ERAL1O75616 437 aaKnown RBP15.26■□□□□ 0.03
CPSF1-213ENST00000620219 ARL4DP49703 201 aa15.26■□□□□ 0.03
CPSF1-213ENST00000620219 CATSPEREQ5SY80 951 aa15.26■□□□□ 0.03
CPSF1-213ENST00000620219 KANK2Q63ZY3 851 aa15.26■□□□□ 0.03
CPSF1-213ENST00000620219 ADGRG6Q86SQ4 1221 aa15.26■□□□□ 0.03
CPSF1-213ENST00000620219 SFRP1Q8N474 314 aa15.26■□□□□ 0.03
CPSF1-213ENST00000620219 SLC44A3Q8N4M1 653 aa15.26■□□□□ 0.03
CPSF1-213ENST00000620219 FAM46DQ8NEK8 389 aa15.26■□□□□ 0.03
CPSF1-213ENST00000620219 GLMNQ92990 594 aa15.26■□□□□ 0.03
CPSF1-213ENST00000620219 HLA-CQ95604 372 aa15.26■□□□□ 0.03
CPSF1-213ENST00000620219 RNF145Q96MT1 663 aa15.26■□□□□ 0.03
CPSF1-213ENST00000620219 TUBB1Q9H4B7 451 aa15.26■□□□□ 0.03
CPSF1-213ENST00000620219 ITM2CQ9NQX7 267 aa15.26■□□□□ 0.03
CPSF1-213ENST00000620219 VPS29Q9UBQ0 182 aa15.26■□□□□ 0.03
CPSF1-213ENST00000620219 NUAK1O60285 661 aa15.26■□□□□ 0.03
CPSF1-213ENST00000620219 WFS1O76024 890 aa15.26■□□□□ 0.03
CPSF1-213ENST00000620219 MPC1LP0DKB6 136 aa15.26■□□□□ 0.03
CPSF1-213ENST00000620219 RPS13P62277 151 aaKnown RBP15.26■□□□□ 0.03
CPSF1-213ENST00000620219 CYP4F3Q08477 520 aa15.26■□□□□ 0.03
CPSF1-213ENST00000620219 HKDC1Q2TB90 917 aa15.26■□□□□ 0.03
CPSF1-213ENST00000620219 RABL3Q5HYI8 236 aa15.26■□□□□ 0.03
CPSF1-213ENST00000620219 SPANXN4Q5MJ08 99 aa15.26■□□□□ 0.03
CPSF1-213ENST00000620219 ZNF852Q6ZMS4 543 aa15.26■□□□□ 0.03
CPSF1-213ENST00000620219 FAM9CQ8IZT9 166 aa15.26■□□□□ 0.03
CPSF1-213ENST00000620219 NSMCE2Q96MF7 247 aa15.26■□□□□ 0.03
CPSF1-213ENST00000620219 MYO1GB0I1T2 1018 aa15.26■□□□□ 0.03
CPSF1-213ENST00000620219 PRKAG1P54619 331 aa15.26■□□□□ 0.03
CPSF1-213ENST00000620219 IER5LQ5T953 404 aa15.26■□□□□ 0.03
CPSF1-213ENST00000620219 SPPL2CQ8IUH8 684 aa15.26■□□□□ 0.03
CPSF1-213ENST00000620219 IL17RCQ8NAC3 791 aa15.26■□□□□ 0.03
CPSF1-213ENST00000620219 COL26A1Q96A83 441 aa15.26■□□□□ 0.03
CPSF1-213ENST00000620219 LRCH3Q96II8 777 aa15.26■□□□□ 0.03
CPSF1-213ENST00000620219 CAAP1Q9H8G2 361 aa15.26■□□□□ 0.03
CPSF1-213ENST00000620219 PRDM8Q9NQV8 689 aa15.26■□□□□ 0.03
CPSF1-213ENST00000620219 KLHL20Q9Y2M5 609 aa15.26■□□□□ 0.03
CPSF1-213ENST00000620219 PLEKHM1Q9Y4G2 1056 aa15.26■□□□□ 0.03
CPSF1-213ENST00000620219 DTNAQ9Y4J8 743 aa15.26■□□□□ 0.03
CPSF1-213ENST00000620219 SEC24DO94855 1032 aaPredicted RBP15.25■□□□□ 0.03
CPSF1-213ENST00000620219 MAOBP27338 520 aa15.25■□□□□ 0.03
CPSF1-213ENST00000620219 PRLHRP49683 370 aa15.25■□□□□ 0.03
CPSF1-213ENST00000620219 PCBP2Q15366 365 aaKnown RBP eCLIP15.25■□□□□ 0.037e-10■■■■■ 38
CPSF1-213ENST00000620219 AASDHQ4L235 1098 aaPredicted RBP15.25■□□□□ 0.03
CPSF1-213ENST00000620219 C1orf21Q9H246 121 aa15.25■□□□□ 0.03
CPSF1-213ENST00000620219 MYLKQ15746 1914 aa15.25■□□□□ 0.03
CPSF1-213ENST00000620219 CHD5Q8TDI0 1954 aa15.25■□□□□ 0.03
CPSF1-213ENST00000620219 SEMA4FO95754 770 aa15.25■□□□□ 0.03
CPSF1-213ENST00000620219 KIR3DL1P43629 444 aa15.25■□□□□ 0.03
CPSF1-213ENST00000620219 SP140Q13342 867 aa15.25■□□□□ 0.03
CPSF1-213ENST00000620219 KRT80Q6KB66 452 aa15.25■□□□□ 0.03
CPSF1-213ENST00000620219 TECPR1Q7Z6L1 1165 aa15.25■□□□□ 0.03
CPSF1-213ENST00000620219 DCUN1D3Q8IWE4 304 aa15.25■□□□□ 0.03
CPSF1-213ENST00000620219 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP15.25■□□□□ 0.039e-6■■□□□ 11.8
CPSF1-213ENST00000620219 ZNF483Q8TF39 744 aaPredicted RBP15.25■□□□□ 0.03
CPSF1-213ENST00000620219 UBE2E3Q969T4 207 aa15.25■□□□□ 0.03
CPSF1-213ENST00000620219 PTBP2Q9UKA9 531 aaKnown RBP15.25■□□□□ 0.03
CPSF1-213ENST00000620219 PRPF19Q9UMS4 504 aaKnown RBP15.25■□□□□ 0.03
CPSF1-213ENST00000620219 CXCR2P25025 360 aa15.25■□□□□ 0.03
CPSF1-213ENST00000620219 SSR2P43308 183 aa15.25■□□□□ 0.03
CPSF1-213ENST00000620219 Q6ZS52 159 aa15.25■□□□□ 0.03
CPSF1-213ENST00000620219 ZNF761Q86XN6 746 aaPredicted RBP15.25■□□□□ 0.03
CPSF1-213ENST00000620219 PTPRZ1P23471 2315 aaPredicted RBP15.25■□□□□ 0.03
CPSF1-213ENST00000620219 SYNDIG1LA6NDD5 238 aa15.25■□□□□ 0.03
CPSF1-213ENST00000620219 B4DGG1 531 aa15.25■□□□□ 0.03
CPSF1-213ENST00000620219 TAPBPO15533 448 aa15.25■□□□□ 0.03
CPSF1-213ENST00000620219 GSTM1P09488 218 aa15.25■□□□□ 0.03
CPSF1-213ENST00000620219 ADSLP30566 484 aaPredicted RBP15.25■□□□□ 0.03
CPSF1-213ENST00000620219 RFX3P48380 749 aa15.25■□□□□ 0.03
CPSF1-213ENST00000620219 GSTM4Q03013 218 aa15.25■□□□□ 0.03
CPSF1-213ENST00000620219 C2orf80Q0P641 193 aa15.25■□□□□ 0.03
CPSF1-213ENST00000620219 LRRC32Q14392 662 aa15.25■□□□□ 0.03
CPSF1-213ENST00000620219 LARP4Q71RC2 724 aaKnown RBP eCLIP15.25■□□□□ 0.032e-8■□□□□ 8.4
CPSF1-213ENST00000620219 PDLIM5Q96HC4 596 aaKnown RBP15.25■□□□□ 0.03
CPSF1-213ENST00000620219 UHRF1Q96T88 793 aaPredicted RBP15.25■□□□□ 0.03
CPSF1-213ENST00000620219 SRMSQ9H3Y6 488 aa15.25■□□□□ 0.03
CPSF1-213ENST00000620219 MTCH2Q9Y6C9 303 aa15.25■□□□□ 0.03
CPSF1-213ENST00000620219 TRBV5-4A0A0C4DH59 114 aa15.24■□□□□ 0.03
CPSF1-213ENST00000620219 FAM149AA5PLN7 773 aa15.24■□□□□ 0.03
CPSF1-213ENST00000620219 FAM170BA6NMN3 283 aa15.24■□□□□ 0.03
CPSF1-213ENST00000620219 AREL1O15033 823 aa15.24■□□□□ 0.03
CPSF1-213ENST00000620219 ZW10O43264 779 aa15.24■□□□□ 0.03
CPSF1-213ENST00000620219 SGTAO43765 313 aa15.24■□□□□ 0.03
CPSF1-213ENST00000620219 PRDX6P30041 224 aa15.24■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms