RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 C2orf54Q08AI8 447 aa18.21■□□□□ 0.51
CDX1-202ENST00000616154 SLC9A5Q14940 896 aa18.21■□□□□ 0.51
CDX1-202ENST00000616154 EIF2S3LQ2VIR3 472 aaKnown RBP18.21■□□□□ 0.51
CDX1-202ENST00000616154 HIST2H2BCQ6DN03 193 aa18.21■□□□□ 0.51
CDX1-202ENST00000616154 LKAAEAR1Q8TD35 194 aa18.21■□□□□ 0.51
CDX1-202ENST00000616154 NDC1Q9BTX1 674 aa18.21■□□□□ 0.51
CDX1-202ENST00000616154 ZNF552Q9H707 407 aaPredicted RBP18.21■□□□□ 0.51
CDX1-202ENST00000616154 IRAK4Q9NWZ3 460 aa18.21■□□□□ 0.51
CDX1-202ENST00000616154 EURLQ9NYK6 297 aa18.21■□□□□ 0.51
CDX1-202ENST00000616154 B3GNT3Q9Y2A9 372 aa18.21■□□□□ 0.51
CDX1-202ENST00000616154 CENPEQ02224 2701 aa18.2■□□□□ 0.5
CDX1-202ENST00000616154 IPO13O94829 963 aaKnown RBP18.2■□□□□ 0.5
CDX1-202ENST00000616154 UMODP07911 640 aa18.2■□□□□ 0.5
CDX1-202ENST00000616154 MAGP20916 626 aa18.2■□□□□ 0.5
CDX1-202ENST00000616154 AOAHP28039 575 aa18.2■□□□□ 0.5
CDX1-202ENST00000616154 VPS41P49754 854 aa18.2■□□□□ 0.5
CDX1-202ENST00000616154 KCTD19Q17RG1 926 aaPredicted RBP18.2■□□□□ 0.5
CDX1-202ENST00000616154 LDB1Q86U70 411 aaPredicted RBP18.2■□□□□ 0.5
CDX1-202ENST00000616154 LURAP1LQ8IV03 231 aa18.2■□□□□ 0.5
CDX1-202ENST00000616154 NAT8LQ8N9F0 302 aa18.2■□□□□ 0.5
CDX1-202ENST00000616154 LINC01555Q8NAE3 123 aa18.2■□□□□ 0.5
CDX1-202ENST00000616154 GRK7Q8WTQ7 553 aa18.2■□□□□ 0.5
CDX1-202ENST00000616154 ASZ1Q8WWH4 475 aa18.2■□□□□ 0.5
CDX1-202ENST00000616154 DLG3Q92796 817 aa18.2■□□□□ 0.5
CDX1-202ENST00000616154 SNRNP40Q96DI7 357 aaKnown RBP18.2■□□□□ 0.5
CDX1-202ENST00000616154 C19orf60Q96EN9 201 aa18.2■□□□□ 0.5
CDX1-202ENST00000616154 SERPINB12Q96P63 405 aa18.2■□□□□ 0.5
CDX1-202ENST00000616154 TCF12Q99081 682 aa18.2■□□□□ 0.5
CDX1-202ENST00000616154 MENTQ9BUN1 341 aa18.2■□□□□ 0.5
CDX1-202ENST00000616154 SLC22A11Q9NSA0 550 aa18.2■□□□□ 0.5
CDX1-202ENST00000616154 MDC1Q14676 2089 aaKnown RBP18.19■□□□□ 0.5
CDX1-202ENST00000616154 FAM237BA0A1B0GVD1 139 aa18.19■□□□□ 0.5
CDX1-202ENST00000616154 MAGEB16A2A368 324 aa18.19■□□□□ 0.5
CDX1-202ENST00000616154 AVILO75366 819 aa18.19■□□□□ 0.5
CDX1-202ENST00000616154 VAPBO95292 243 aa18.19■□□□□ 0.5
CDX1-202ENST00000616154 RPN2P04844 631 aa18.19■□□□□ 0.5
CDX1-202ENST00000616154 OGNP20774 298 aaKnown RBP18.19■□□□□ 0.5
CDX1-202ENST00000616154 CSE1LP55060 971 aaKnown RBP18.19■□□□□ 0.5
CDX1-202ENST00000616154 FOXL2P58012 376 aa18.19■□□□□ 0.5
CDX1-202ENST00000616154 DHX34Q14147 1143 aaKnown RBP18.19■□□□□ 0.5
CDX1-202ENST00000616154 CYP2A13Q16696 494 aa18.19■□□□□ 0.5
CDX1-202ENST00000616154 RNF187Q5TA31 235 aaPredicted RBP18.19■□□□□ 0.5
CDX1-202ENST00000616154 MRNIPQ6NTE8 343 aa18.19■□□□□ 0.5
CDX1-202ENST00000616154 VRK3Q8IV63 474 aa18.19■□□□□ 0.5
CDX1-202ENST00000616154 FAM20CQ8IXL6 584 aa18.19■□□□□ 0.5
CDX1-202ENST00000616154 NOA1Q8NC60 698 aaKnown RBP18.19■□□□□ 0.5
CDX1-202ENST00000616154 LRRN4CLQ8ND94 238 aa18.19■□□□□ 0.5
CDX1-202ENST00000616154 PRR7Q8TB68 274 aa18.19■□□□□ 0.5
CDX1-202ENST00000616154 TM9SF4Q92544 642 aa18.19■□□□□ 0.5
CDX1-202ENST00000616154 LPGAT1Q92604 370 aa18.19■□□□□ 0.5
CDX1-202ENST00000616154 FKBP10Q96AY3 582 aa18.19■□□□□ 0.5
CDX1-202ENST00000616154 NACC2Q96BF6 587 aa18.19■□□□□ 0.5
CDX1-202ENST00000616154 BIRC8Q96P09 236 aa18.19■□□□□ 0.5
CDX1-202ENST00000616154 PANX3Q96QZ0 392 aa18.19■□□□□ 0.5
CDX1-202ENST00000616154 KRT12Q99456 494 aa18.19■□□□□ 0.5
CDX1-202ENST00000616154 GNPTGQ9UJJ9 305 aa18.19■□□□□ 0.5
CDX1-202ENST00000616154 ITPR2Q14571 2701 aa18.18■□□□□ 0.5
CDX1-202ENST00000616154 CNTRLQ7Z7A1 2325 aa18.18■□□□□ 0.5
CDX1-202ENST00000616154 IQCF5A8MTL0 148 aa18.18■□□□□ 0.5
CDX1-202ENST00000616154 ONECUT2O95948 504 aa18.18■□□□□ 0.5
CDX1-202ENST00000616154 APOA4P06727 396 aa18.18■□□□□ 0.5
CDX1-202ENST00000616154 ATXN8OSP0DMR3 200 aa18.18■□□□□ 0.5
CDX1-202ENST00000616154 ITGAXP20702 1163 aa18.18■□□□□ 0.5
CDX1-202ENST00000616154 CD9P21926 228 aa18.18■□□□□ 0.5
CDX1-202ENST00000616154 ARSFP54793 590 aa18.18■□□□□ 0.5
CDX1-202ENST00000616154 HSPA14Q0VDF9 509 aa18.18■□□□□ 0.5
CDX1-202ENST00000616154 GRB7Q14451 532 aa18.18■□□□□ 0.5
CDX1-202ENST00000616154 GBX1Q14549 363 aa18.18■□□□□ 0.5
CDX1-202ENST00000616154 NR6A1Q15406 480 aa18.18■□□□□ 0.5
CDX1-202ENST00000616154 UNC5DQ6UXZ4 953 aa18.18■□□□□ 0.5
CDX1-202ENST00000616154 SYDE1Q6ZW31 735 aaPredicted RBP18.18■□□□□ 0.5
CDX1-202ENST00000616154 MCATQ8IVS2 390 aaKnown RBP18.18■□□□□ 0.5
CDX1-202ENST00000616154 TMEM151BQ8IW70 566 aa18.18■□□□□ 0.5
CDX1-202ENST00000616154 DCUN1D3Q8IWE4 304 aa18.18■□□□□ 0.5
CDX1-202ENST00000616154 KLHL7Q8IXQ5 586 aa18.18■□□□□ 0.5
CDX1-202ENST00000616154 DENND1AQ8TEH3 1009 aa18.18■□□□□ 0.5
CDX1-202ENST00000616154 SLC22A18Q96BI1 424 aa18.18■□□□□ 0.5
CDX1-202ENST00000616154 ILKAPQ9H0C8 392 aaPredicted RBP18.18■□□□□ 0.5
CDX1-202ENST00000616154 ATP13A2Q9NQ11 1180 aa18.18■□□□□ 0.5
CDX1-202ENST00000616154 ASF1BQ9NVP2 202 aa18.18■□□□□ 0.5
CDX1-202ENST00000616154 KLHL20Q9Y2M5 609 aa18.18■□□□□ 0.5
CDX1-202ENST00000616154 POLEQ07864 2286 aa18.17■□□□□ 0.5
CDX1-202ENST00000616154 ZCWPW2A0A1B0GU75 182 aa18.17■□□□□ 0.5
CDX1-202ENST00000616154 A0A1B0GX78 115 aa18.17■□□□□ 0.5
CDX1-202ENST00000616154 SDR42E2A6NKP2 422 aa18.17■□□□□ 0.5
CDX1-202ENST00000616154 AGPSO00116 658 aa18.17■□□□□ 0.5
CDX1-202ENST00000616154 KPNA5O15131 536 aa18.17■□□□□ 0.5
CDX1-202ENST00000616154 NDUFS3O75489 264 aa18.17■□□□□ 0.5
CDX1-202ENST00000616154 CBX6O95503 412 aa18.17■□□□□ 0.5
CDX1-202ENST00000616154 S1PR4O95977 384 aa18.17■□□□□ 0.5
CDX1-202ENST00000616154 PAMP19021 973 aa18.17■□□□□ 0.5
CDX1-202ENST00000616154 CRB2Q5IJ48 1285 aa18.17■□□□□ 0.5
CDX1-202ENST00000616154 CTSL3PQ5NE16 218 aa18.17■□□□□ 0.5
CDX1-202ENST00000616154 RNASEH2BQ5TBB1 312 aaKnown RBP18.17■□□□□ 0.5
CDX1-202ENST00000616154 CES3Q6UWW8 571 aa18.17■□□□□ 0.5
CDX1-202ENST00000616154 Q6ZS92 163 aa18.17■□□□□ 0.5
CDX1-202ENST00000616154 SDCCAG8Q86SQ7 713 aaPredicted RBP18.17■□□□□ 0.5
CDX1-202ENST00000616154 AGGF1Q8N302 714 aaeCLIP18.17■□□□□ 0.5
CDX1-202ENST00000616154 CISD2Q8N5K1 135 aaKnown RBP18.17■□□□□ 0.5
CDX1-202ENST00000616154 OR2L8Q8NGY9 312 aa18.17■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms