RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 CUZD1Q86UP6 607 aa16.84■□□□□ 0.29
SHKBP1-223ENST00000600552 DENND1AQ8TEH3 1009 aa16.84■□□□□ 0.29
SHKBP1-223ENST00000600552 INPP5DQ92835 1189 aa16.84■□□□□ 0.29
SHKBP1-223ENST00000600552 TSGA10Q9BZW7 698 aa16.84■□□□□ 0.29
SHKBP1-223ENST00000600552 ABCF3Q9NUQ8 709 aa16.84■□□□□ 0.29
SHKBP1-223ENST00000600552 CSAG2Q9Y5P2 127 aa16.84■□□□□ 0.29
SHKBP1-223ENST00000600552 CNTRLQ7Z7A1 2325 aa16.84■□□□□ 0.29
SHKBP1-223ENST00000600552 HYKKA2RU49 373 aa16.83■□□□□ 0.28
SHKBP1-223ENST00000600552 ANKUB1A6NFN9 424 aa16.83■□□□□ 0.28
SHKBP1-223ENST00000600552 GOLGA6L6A8MZA4 724 aa16.83■□□□□ 0.28
SHKBP1-223ENST00000600552 CTSVO60911 334 aa16.83■□□□□ 0.28
SHKBP1-223ENST00000600552 C1orf105O95561 183 aa16.83■□□□□ 0.28
SHKBP1-223ENST00000600552 NPY2RP49146 381 aa16.83■□□□□ 0.28
SHKBP1-223ENST00000600552 YBX1P67809 324 aaKnown RBP16.83■□□□□ 0.28
SHKBP1-223ENST00000600552 TRIP13Q15645 432 aaPredicted RBP16.83■□□□□ 0.28
SHKBP1-223ENST00000600552 CCNG2Q16589 344 aa16.83■□□□□ 0.28
SHKBP1-223ENST00000600552 FAM214AQ32MH5 1076 aa16.83■□□□□ 0.28
SHKBP1-223ENST00000600552 HIVEP3Q5T1R4 2406 aa16.83■□□□□ 0.28
SHKBP1-223ENST00000600552 FRMPD2BQ6IN97 320 aa16.83■□□□□ 0.28
SHKBP1-223ENST00000600552 COX15Q7KZN9 410 aa16.83■□□□□ 0.28
SHKBP1-223ENST00000600552 SDCCAG8Q86SQ7 713 aaPredicted RBP16.83■□□□□ 0.28
SHKBP1-223ENST00000600552 DNAJB14Q8TBM8 379 aa16.83■□□□□ 0.28
SHKBP1-223ENST00000600552 FKBP10Q96AY3 582 aa16.83■□□□□ 0.28
SHKBP1-223ENST00000600552 RAB11FIP5Q9BXF6 653 aa16.83■□□□□ 0.28
SHKBP1-223ENST00000600552 P2RY12Q9H244 342 aa16.83■□□□□ 0.28
SHKBP1-223ENST00000600552 LZTFL1Q9NQ48 299 aa16.83■□□□□ 0.28
SHKBP1-223ENST00000600552 SYBUQ9NX95 663 aa16.83■□□□□ 0.28
SHKBP1-223ENST00000600552 CRYL1Q9Y2S2 319 aa16.83■□□□□ 0.28
SHKBP1-223ENST00000600552 FAM169AQ9Y6X4 670 aa16.83■□□□□ 0.28
SHKBP1-223ENST00000600552 LOC105369274A0A096LPK9 316 aa16.82■□□□□ 0.28
SHKBP1-223ENST00000600552 LOC102723532A0A0G2JNH3 316 aa16.82■□□□□ 0.28
SHKBP1-223ENST00000600552 SOCS6O14544 535 aa16.82■□□□□ 0.28
SHKBP1-223ENST00000600552 KPNA5O15131 536 aa16.82■□□□□ 0.28
SHKBP1-223ENST00000600552 NIPSNAP2O75323 286 aa16.82■□□□□ 0.28
SHKBP1-223ENST00000600552 CBX6O95503 412 aa16.82■□□□□ 0.28
SHKBP1-223ENST00000600552 ERVK-10P10266 1014 aa16.82■□□□□ 0.28
SHKBP1-223ENST00000600552 CHRM3P20309 590 aa16.82■□□□□ 0.28
SHKBP1-223ENST00000600552 VPS41P49754 854 aa16.82■□□□□ 0.28
SHKBP1-223ENST00000600552 FASTKQ14296 549 aaKnown RBP16.82■□□□□ 0.28
SHKBP1-223ENST00000600552 CTSL3PQ5NE16 218 aa16.82■□□□□ 0.28
SHKBP1-223ENST00000600552 MEI1Q5TIA1 1274 aa16.82■□□□□ 0.28
SHKBP1-223ENST00000600552 AGAP7PQ5VUJ5 663 aa16.82■□□□□ 0.28
SHKBP1-223ENST00000600552 KIRREL2Q6UWL6 708 aa16.82■□□□□ 0.28
SHKBP1-223ENST00000600552 IGFL3Q6UXB1 125 aa16.82■□□□□ 0.28
SHKBP1-223ENST00000600552 LINC00696Q6ZRV3 163 aa16.82■□□□□ 0.28
SHKBP1-223ENST00000600552 OR4N4Q8N0Y3 316 aa16.82■□□□□ 0.28
SHKBP1-223ENST00000600552 ZUFSPQ96AP4 578 aa16.82■□□□□ 0.28
SHKBP1-223ENST00000600552 MFSD3Q96ES6 412 aa16.82■□□□□ 0.28
SHKBP1-223ENST00000600552 THOC3Q96J01 351 aaKnown RBP16.82■□□□□ 0.28
SHKBP1-223ENST00000600552 AGAP4Q96P64 663 aa16.82■□□□□ 0.28
SHKBP1-223ENST00000600552 MESP1Q9BRJ9 268 aa16.82■□□□□ 0.28
SHKBP1-223ENST00000600552 CRB3Q9BUF7 120 aa16.82■□□□□ 0.28
SHKBP1-223ENST00000600552 IL22Q9GZX6 179 aa16.82■□□□□ 0.28
SHKBP1-223ENST00000600552 ZNF304Q9HCX3 659 aa16.82■□□□□ 0.28
SHKBP1-223ENST00000600552 TREX1Q9NSU2 369 aa16.82■□□□□ 0.28
SHKBP1-223ENST00000600552 CUEDC1Q9NWM3 386 aaPredicted RBP16.82■□□□□ 0.28
SHKBP1-223ENST00000600552 ERRFI1Q9UJM3 462 aaPredicted RBP16.82■□□□□ 0.28
SHKBP1-223ENST00000600552 NTNG1Q9Y2I2 539 aa16.82■□□□□ 0.28
SHKBP1-223ENST00000600552 HS3ST3B1Q9Y662 390 aa16.82■□□□□ 0.28
SHKBP1-223ENST00000600552 PCM1Q15154 2024 aa16.82■□□□□ 0.28
SHKBP1-223ENST00000600552 CACNA1DQ01668 2161 aa16.81■□□□□ 0.28
SHKBP1-223ENST00000600552 FFAR3O14843 346 aa16.81■□□□□ 0.28
SHKBP1-223ENST00000600552 GPR42O15529 346 aa16.81■□□□□ 0.28
SHKBP1-223ENST00000600552 PRICKLE3O43900 615 aaPredicted RBP16.81■□□□□ 0.28
SHKBP1-223ENST00000600552 MED26O95402 600 aa16.81■□□□□ 0.28
SHKBP1-223ENST00000600552 DDAH2O95865 285 aa16.81■□□□□ 0.28
SHKBP1-223ENST00000600552 FGGP02679 453 aa16.81■□□□□ 0.28
SHKBP1-223ENST00000600552 ALBP02768 609 aa16.81■□□□□ 0.28
SHKBP1-223ENST00000600552 F7P08709 466 aaPredicted RBP16.81■□□□□ 0.28
SHKBP1-223ENST00000600552 GCGRP47871 477 aa16.81■□□□□ 0.28
SHKBP1-223ENST00000600552 OCA2Q04671 838 aa16.81■□□□□ 0.28
SHKBP1-223ENST00000600552 SIX1Q15475 284 aaPredicted RBP16.81■□□□□ 0.28
SHKBP1-223ENST00000600552 TUBB8Q3ZCM7 444 aa16.81■□□□□ 0.28
SHKBP1-223ENST00000600552 YOD1Q5VVQ6 348 aaPredicted RBP16.81■□□□□ 0.28
SHKBP1-223ENST00000600552 MRNIPQ6NTE8 343 aa16.81■□□□□ 0.28
SHKBP1-223ENST00000600552 CASC4Q6P4E1 433 aa16.81■□□□□ 0.28
SHKBP1-223ENST00000600552 LRRC6Q86X45 466 aa16.81■□□□□ 0.28
SHKBP1-223ENST00000600552 LURAP1LQ8IV03 231 aa16.81■□□□□ 0.28
SHKBP1-223ENST00000600552 OR2L3Q8NG85 312 aa16.81■□□□□ 0.28
SHKBP1-223ENST00000600552 PEX13Q92968 403 aa16.81■□□□□ 0.28
SHKBP1-223ENST00000600552 C8orf44Q96CB5 159 aa16.81■□□□□ 0.28
SHKBP1-223ENST00000600552 CABS1Q96KC9 395 aa16.81■□□□□ 0.28
SHKBP1-223ENST00000600552 SPSB2Q99619 263 aa16.81■□□□□ 0.28
SHKBP1-223ENST00000600552 WDR77Q9BQA1 342 aaPredicted RBP16.81■□□□□ 0.28
SHKBP1-223ENST00000600552 WDR54Q9H977 334 aa16.81■□□□□ 0.28
SHKBP1-223ENST00000600552 EIF2B3Q9NR50 452 aaKnown RBP16.81■□□□□ 0.28
SHKBP1-223ENST00000600552 DRG1Q9Y295 367 aaKnown RBP16.81■□□□□ 0.28
SHKBP1-223ENST00000600552 PCDHGA10Q9Y5H3 936 aa16.81■□□□□ 0.28
SHKBP1-223ENST00000600552 NOTCH2Q04721 2471 aa16.8■□□□□ 0.28
SHKBP1-223ENST00000600552 TCRBV7S3A2A0A539 114 aa16.8■□□□□ 0.28
SHKBP1-223ENST00000600552 TARM1B6A8C7 271 aa16.8■□□□□ 0.28
SHKBP1-223ENST00000600552 CEP104O60308 925 aa16.8■□□□□ 0.28
SHKBP1-223ENST00000600552 AVILO75366 819 aa16.8■□□□□ 0.28
SHKBP1-223ENST00000600552 UQCRHP07919 91 aa16.8■□□□□ 0.28
SHKBP1-223ENST00000600552 RPS3P23396 243 aaKnown RBP eCLIP16.8■□□□□ 0.28
SHKBP1-223ENST00000600552 CMPK1P30085 196 aa16.8■□□□□ 0.28
SHKBP1-223ENST00000600552 RPA3P35244 121 aaPredicted RBP16.8■□□□□ 0.28
SHKBP1-223ENST00000600552 CCNFP41002 786 aa16.8■□□□□ 0.28
SHKBP1-223ENST00000600552 SOX8P57073 446 aa16.8■□□□□ 0.28
SHKBP1-223ENST00000600552 CDC16Q13042 620 aa16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms