RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 TMEM109Q9BVC6 243 aa18.65■□□□□ 0.58
UPF1-209ENST00000600310 ATG10Q9H0Y0 220 aa18.65■□□□□ 0.58
UPF1-209ENST00000600310 OCIAD1Q9NX40 245 aa18.65■□□□□ 0.58
UPF1-209ENST00000600310 SIDT1Q9NXL6 827 aaKnown RBP18.65■□□□□ 0.58
UPF1-209ENST00000600310 KERAO60938 352 aa18.64■□□□□ 0.57
UPF1-209ENST00000600310 FGF3P11487 239 aaPredicted RBP18.64■□□□□ 0.57
UPF1-209ENST00000600310 CCND1P24385 295 aa18.64■□□□□ 0.57
UPF1-209ENST00000600310 PSMB5P28074 263 aa18.64■□□□□ 0.57
UPF1-209ENST00000600310 MLLT3P42568 568 aaPredicted RBP18.64■□□□□ 0.57
UPF1-209ENST00000600310 ARL4DP49703 201 aa18.64■□□□□ 0.57
UPF1-209ENST00000600310 HNMTP50135 292 aa18.64■□□□□ 0.57
UPF1-209ENST00000600310 NAE1Q13564 534 aa18.64■□□□□ 0.57
UPF1-209ENST00000600310 TSTA3Q13630 321 aaPredicted RBP18.64■□□□□ 0.57
UPF1-209ENST00000600310 TSNAXIP1Q2TAA8 658 aa18.64■□□□□ 0.57
UPF1-209ENST00000600310 BEND6Q5SZJ8 279 aaPredicted RBP18.64■□□□□ 0.57
UPF1-209ENST00000600310 KIAA1614Q5VZ46 1190 aa18.64■□□□□ 0.57
UPF1-209ENST00000600310 IGF2-ASQ6U949 168 aa18.64■□□□□ 0.57
UPF1-209ENST00000600310 FAM129CQ86XR2 697 aa18.64■□□□□ 0.57
UPF1-209ENST00000600310 CYP4X1Q8N118 509 aa18.64■□□□□ 0.57
UPF1-209ENST00000600310 OR56A3Q8NH54 315 aa18.64■□□□□ 0.57
UPF1-209ENST00000600310 HNRNPLLQ8WVV9 542 aaKnown RBP18.64■□□□□ 0.57
UPF1-209ENST00000600310 RHBDF1Q96CC6 855 aa18.64■□□□□ 0.57
UPF1-209ENST00000600310 NXPE2Q96DL1 559 aa18.64■□□□□ 0.57
UPF1-209ENST00000600310 EGFL8Q99944 293 aa18.64■□□□□ 0.57
UPF1-209ENST00000600310 SGPP1Q9BX95 441 aa18.64■□□□□ 0.57
UPF1-209ENST00000600310 CHRNA10Q9GZZ6 450 aa18.64■□□□□ 0.57
UPF1-209ENST00000600310 PCBD2Q9H0N5 130 aa18.64■□□□□ 0.57
UPF1-209ENST00000600310 CCDC177Q9NQR7 707 aaPredicted RBP18.64■□□□□ 0.57
UPF1-209ENST00000600310 INTS7Q9NVH2 962 aaKnown RBP18.64■□□□□ 0.57
UPF1-209ENST00000600310 PISDQ9UG56 409 aa18.64■□□□□ 0.57
UPF1-209ENST00000600310 TAC3Q9UHF0 121 aa18.64■□□□□ 0.57
UPF1-209ENST00000600310 RNF112Q9ULX5 631 aa18.64■□□□□ 0.57
UPF1-209ENST00000600310 KMT2BQ9UMN6 2715 aaPredicted RBP18.64■□□□□ 0.57
UPF1-209ENST00000600310 TLDC2A0PJX2 215 aa18.63■□□□□ 0.57
UPF1-209ENST00000600310 DXOO77932 396 aaKnown RBP18.63■□□□□ 0.57
UPF1-209ENST00000600310 CCNDBP1O95273 360 aa18.63■□□□□ 0.57
UPF1-209ENST00000600310 MT-ND3P03897 115 aa18.63■□□□□ 0.57
UPF1-209ENST00000600310 ITIH1P19827 911 aa18.63■□□□□ 0.57
UPF1-209ENST00000600310 CMPK1P30085 196 aa18.63■□□□□ 0.57
UPF1-209ENST00000600310 ETV5P41161 510 aa18.63■□□□□ 0.57
UPF1-209ENST00000600310 GLRBP48167 497 aa18.63■□□□□ 0.57
UPF1-209ENST00000600310 TBPL1P62380 186 aa18.63■□□□□ 0.57
UPF1-209ENST00000600310 MC2RQ01718 297 aa18.63■□□□□ 0.57
UPF1-209ENST00000600310 PRDX1Q06830 199 aaKnown RBP18.63■□□□□ 0.57
UPF1-209ENST00000600310 IQCKQ8N0W5 287 aa18.63■□□□□ 0.57
UPF1-209ENST00000600310 LSMEM2Q8N112 164 aa18.63■□□□□ 0.57
UPF1-209ENST00000600310 TCAIMQ8N3R3 496 aa18.63■□□□□ 0.57
UPF1-209ENST00000600310 C19orf47Q8N9M1 422 aaKnown RBP18.63■□□□□ 0.57
UPF1-209ENST00000600310 TCTN2Q96GX1 697 aa18.63■□□□□ 0.57
UPF1-209ENST00000600310 SLC46A1Q96NT5 459 aa18.63■□□□□ 0.57
UPF1-209ENST00000600310 MIPEPQ99797 713 aa18.63■□□□□ 0.57
UPF1-209ENST00000600310 ACAT2Q9BWD1 397 aa18.63■□□□□ 0.57
UPF1-209ENST00000600310 KLHL25Q9H0H3 589 aa18.63■□□□□ 0.57
UPF1-209ENST00000600310 FBXO8Q9NRD0 319 aa18.63■□□□□ 0.57
UPF1-209ENST00000600310 PCMTD2Q9NV79 361 aa18.63■□□□□ 0.57
UPF1-209ENST00000600310 SOHLH2Q9NX45 425 aa18.63■□□□□ 0.57
UPF1-209ENST00000600310 KLK4Q9Y5K2 254 aa18.63■□□□□ 0.57
UPF1-209ENST00000600310 A0A1W2PPM1 405 aa18.62■□□□□ 0.57
UPF1-209ENST00000600310 MAP3K7O43318 606 aa18.62■□□□□ 0.57
UPF1-209ENST00000600310 TNFSF15O95150 251 aa18.62■□□□□ 0.57
UPF1-209ENST00000600310 RBP1P09455 135 aa18.62■□□□□ 0.57
UPF1-209ENST00000600310 FOLR1P15328 257 aa18.62■□□□□ 0.57
UPF1-209ENST00000600310 KRT15P19012 456 aa18.62■□□□□ 0.57
UPF1-209ENST00000600310 MAGP20916 626 aa18.62■□□□□ 0.57
UPF1-209ENST00000600310 SH3BP2P78314 561 aa18.62■□□□□ 0.57
UPF1-209ENST00000600310 ABATP80404 500 aa18.62■□□□□ 0.57
UPF1-209ENST00000600310 NAA25Q14CX7 972 aa18.62■□□□□ 0.57
UPF1-209ENST00000600310 ZIC1Q15915 447 aa18.62■□□□□ 0.57
UPF1-209ENST00000600310 TECRLQ5HYJ1 363 aa18.62■□□□□ 0.57
UPF1-209ENST00000600310 TMTC4Q5T4D3 741 aa18.62■□□□□ 0.57
UPF1-209ENST00000600310 PRAMEF13Q5VWM6 474 aa18.62■□□□□ 0.57
UPF1-209ENST00000600310 ICE2Q659A1 982 aa18.62■□□□□ 0.57
UPF1-209ENST00000600310 SULT1C3Q6IMI6 304 aa18.62■□□□□ 0.57
UPF1-209ENST00000600310 CAPN13Q6MZZ7 669 aaPredicted RBP18.62■□□□□ 0.57
UPF1-209ENST00000600310 FOXR1Q6PIV2 292 aa18.62■□□□□ 0.57
UPF1-209ENST00000600310 SH2D5Q6ZV89 423 aa18.62■□□□□ 0.57
UPF1-209ENST00000600310 LCA5Q86VQ0 697 aa18.62■□□□□ 0.57
UPF1-209ENST00000600310 PDPRQ8NCN5 879 aa18.62■□□□□ 0.57
UPF1-209ENST00000600310 GATA6Q92908 595 aa18.62■□□□□ 0.57
UPF1-209ENST00000600310 ZUFSPQ96AP4 578 aa18.62■□□□□ 0.57
UPF1-209ENST00000600310 MED8Q96G25 268 aa18.62■□□□□ 0.57
UPF1-209ENST00000600310 TSNARE1Q96NA8 513 aa18.62■□□□□ 0.57
UPF1-209ENST00000600310 TMEM121BQ9BXQ6 578 aaPredicted RBP18.62■□□□□ 0.57
UPF1-209ENST00000600310 B3GNT4Q9C0J1 378 aa18.62■□□□□ 0.57
UPF1-209ENST00000600310 PDE7BQ9NP56 450 aa18.62■□□□□ 0.57
UPF1-209ENST00000600310 ZNF358Q9NW07 568 aa18.62■□□□□ 0.57
UPF1-209ENST00000600310 SLC39A1Q9NY26 324 aa18.62■□□□□ 0.57
UPF1-209ENST00000600310 NUDT4Q9NZJ9 180 aa18.62■□□□□ 0.57
UPF1-209ENST00000600310 LGALS13Q9UHV8 139 aa18.62■□□□□ 0.57
UPF1-209ENST00000600310 AK5Q9Y6K8 562 aa18.62■□□□□ 0.57
UPF1-209ENST00000600310 NCF1BA6NI72 391 aaPredicted RBP18.61■□□□□ 0.57
UPF1-209ENST00000600310 SYCE1LA8MT33 242 aa18.61■□□□□ 0.57
UPF1-209ENST00000600310 NCF1CA8MVU1 366 aaPredicted RBP18.61■□□□□ 0.57
UPF1-209ENST00000600310 TARM1B6A8C7 271 aa18.61■□□□□ 0.57
UPF1-209ENST00000600310 GOLGA8RI6L899 631 aa18.61■□□□□ 0.57
UPF1-209ENST00000600310 PRAMEF10O60809 474 aa18.61■□□□□ 0.57
UPF1-209ENST00000600310 MSL3P1P0C860 447 aa18.61■□□□□ 0.57
UPF1-209ENST00000600310 PYGBP11216 843 aa18.61■□□□□ 0.57
UPF1-209ENST00000600310 MTHFD2P13995 350 aa18.61■□□□□ 0.57
UPF1-209ENST00000600310 NCF1P14598 390 aaPredicted RBP18.61■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms