RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 PLEKHM1Q9Y4G2 1056 aa12.32□□□□□ -0.44
UPF1-208ENST00000600012 NBASA2RRP1 2371 aa12.32□□□□□ -0.44
UPF1-208ENST00000600012 UBR5O95071 2799 aaPredicted RBP12.31□□□□□ -0.44
UPF1-208ENST00000600012 BSNQ9UPA5 3926 aa12.31□□□□□ -0.44
UPF1-208ENST00000600012 EFCAB7A8K855 629 aa12.31□□□□□ -0.44
UPF1-208ENST00000600012 ZNF891A8MT65 544 aaPredicted RBP12.31□□□□□ -0.44
UPF1-208ENST00000600012 F8W8V4 182 aa12.31□□□□□ -0.44
UPF1-208ENST00000600012 CDC7O00311 574 aa12.31□□□□□ -0.44
UPF1-208ENST00000600012 QSOX1O00391 747 aa12.31□□□□□ -0.44
UPF1-208ENST00000600012 MPSTP25325 297 aa12.31□□□□□ -0.44
UPF1-208ENST00000600012 AOAHP28039 575 aa12.31□□□□□ -0.44
UPF1-208ENST00000600012 SLC26A3P40879 764 aa12.31□□□□□ -0.44
UPF1-208ENST00000600012 SKIV2L2P42285 1042 aaKnown RBP12.31□□□□□ -0.44
UPF1-208ENST00000600012 POLE2P56282 527 aa12.31□□□□□ -0.44
UPF1-208ENST00000600012 IL2P60568 153 aa12.31□□□□□ -0.44
UPF1-208ENST00000600012 TLE1Q04724 770 aa12.31□□□□□ -0.44
UPF1-208ENST00000600012 KCNAB2Q13303 367 aa12.31□□□□□ -0.44
UPF1-208ENST00000600012 PCLAFQ15004 111 aa12.31□□□□□ -0.44
UPF1-208ENST00000600012 OR4D1Q15615 310 aa12.31□□□□□ -0.44
UPF1-208ENST00000600012 TSNQ15631 228 aaKnown RBP12.31□□□□□ -0.44
UPF1-208ENST00000600012 LCA5Q86VQ0 697 aa12.31□□□□□ -0.44
UPF1-208ENST00000600012 ZNF547Q8IVP9 402 aa12.31□□□□□ -0.44
UPF1-208ENST00000600012 SFRP1Q8N474 314 aa12.31□□□□□ -0.44
UPF1-208ENST00000600012 LILRA3Q8N6C8 439 aaPredicted RBP12.31□□□□□ -0.44
UPF1-208ENST00000600012 BMPERQ8N8U9 685 aa12.31□□□□□ -0.44
UPF1-208ENST00000600012 EXT2Q93063 718 aa12.31□□□□□ -0.44
UPF1-208ENST00000600012 KIAA1143Q96AT1 154 aaPredicted RBP12.31□□□□□ -0.44
UPF1-208ENST00000600012 SLC45A3Q96JT2 553 aa12.31□□□□□ -0.44
UPF1-208ENST00000600012 DERL2Q9GZP9 239 aa12.31□□□□□ -0.44
UPF1-208ENST00000600012 STN1Q9H668 368 aaKnown RBP12.31□□□□□ -0.44
UPF1-208ENST00000600012 ALG9Q9H6U8 611 aa12.31□□□□□ -0.44
UPF1-208ENST00000600012 LATS2Q9NRM7 1088 aa12.31□□□□□ -0.44
UPF1-208ENST00000600012 OCIAD1Q9NX40 245 aa12.31□□□□□ -0.44
UPF1-208ENST00000600012 G3V2L1 256 aa12.3□□□□□ -0.44
UPF1-208ENST00000600012 BTN3A1O00481 513 aa12.3□□□□□ -0.44
UPF1-208ENST00000600012 NUAK1O60285 661 aa12.3□□□□□ -0.44
UPF1-208ENST00000600012 APOA4P06727 396 aa12.3□□□□□ -0.44
UPF1-208ENST00000600012 BPGMP07738 259 aa12.3□□□□□ -0.44
UPF1-208ENST00000600012 CCR10P46092 362 aa12.3□□□□□ -0.44
UPF1-208ENST00000600012 RGS4P49798 205 aa12.3□□□□□ -0.44
UPF1-208ENST00000600012 ATP6V0D1P61421 351 aa12.3□□□□□ -0.44
UPF1-208ENST00000600012 HHEXQ03014 270 aa12.3□□□□□ -0.44
UPF1-208ENST00000600012 HSPA14Q0VDF9 509 aa12.3□□□□□ -0.44
UPF1-208ENST00000600012 ACAP2Q15057 778 aa12.3□□□□□ -0.44
UPF1-208ENST00000600012 TTLL9Q3SXZ7 439 aa12.3□□□□□ -0.44
UPF1-208ENST00000600012 SYTL3Q4VX76 610 aa12.3□□□□□ -0.44
UPF1-208ENST00000600012 CHCHD2P9Q5T1J5 151 aaPredicted RBP12.3□□□□□ -0.44
UPF1-208ENST00000600012 ANKS6Q68DC2 871 aa12.3□□□□□ -0.44
UPF1-208ENST00000600012 WDR74Q6RFH5 385 aaPredicted RBP12.3□□□□□ -0.44
UPF1-208ENST00000600012 LRRTM4Q86VH4 590 aa12.3□□□□□ -0.44
UPF1-208ENST00000600012 ZNF761Q86XN6 746 aaPredicted RBP12.3□□□□□ -0.44
UPF1-208ENST00000600012 VRK3Q8IV63 474 aa12.3□□□□□ -0.44
UPF1-208ENST00000600012 NLGN4XQ8N0W4 816 aa12.3□□□□□ -0.44
UPF1-208ENST00000600012 MYO1HQ8N1T3 1032 aa12.3□□□□□ -0.44
UPF1-208ENST00000600012 TMEM151AQ8N4L1 468 aa12.3□□□□□ -0.44
UPF1-208ENST00000600012 NLGN4YQ8NFZ3 816 aaPredicted RBP12.3□□□□□ -0.44
UPF1-208ENST00000600012 CKAP2Q8WWK9 683 aa12.3□□□□□ -0.44
UPF1-208ENST00000600012 SH3KBP1Q96B97 665 aa12.3□□□□□ -0.44
UPF1-208ENST00000600012 ZPBPQ9BS86 351 aa12.3□□□□□ -0.44
UPF1-208ENST00000600012 CCM2Q9BSQ5 444 aa12.3□□□□□ -0.44
UPF1-208ENST00000600012 EFHD1Q9BUP0 239 aa12.3□□□□□ -0.44
UPF1-208ENST00000600012 MRPL46Q9H2W6 279 aaKnown RBP12.3□□□□□ -0.44
UPF1-208ENST00000600012 GPN2Q9H9Y4 310 aaPredicted RBP12.3□□□□□ -0.44
UPF1-208ENST00000600012 COPG2Q9UBF2 871 aa12.3□□□□□ -0.44
UPF1-208ENST00000600012 MID2Q9UJV3 735 aa12.3□□□□□ -0.44
UPF1-208ENST00000600012 PILRAQ9UKJ1 303 aa12.3□□□□□ -0.44
UPF1-208ENST00000600012 TRBV23OR9-2A0A075B6M9 112 aa12.29□□□□□ -0.44
UPF1-208ENST00000600012 TARM1B6A8C7 271 aa12.29□□□□□ -0.44
UPF1-208ENST00000600012 CHUKO15111 745 aa12.29□□□□□ -0.44
UPF1-208ENST00000600012 POP7O75817 140 aaKnown RBP12.29□□□□□ -0.44
UPF1-208ENST00000600012 MYL2P10916 166 aa12.29□□□□□ -0.44
UPF1-208ENST00000600012 NEFHP12036 1026 aa12.29□□□□□ -0.44
UPF1-208ENST00000600012 SLC2A4P14672 509 aa12.29□□□□□ -0.44
UPF1-208ENST00000600012 CPA3P15088 417 aa12.29□□□□□ -0.44
UPF1-208ENST00000600012 BGNP21810 368 aa12.29□□□□□ -0.44
UPF1-208ENST00000600012 MAP4P27816 1152 aaKnown RBP12.29□□□□□ -0.44
UPF1-208ENST00000600012 ALDH3A1P30838 453 aa12.29□□□□□ -0.44
UPF1-208ENST00000600012 PREPP48147 710 aa12.29□□□□□ -0.44
UPF1-208ENST00000600012 EPHA4P54764 986 aa12.29□□□□□ -0.44
UPF1-208ENST00000600012 MC2RQ01718 297 aa12.29□□□□□ -0.44
UPF1-208ENST00000600012 GBX1Q14549 363 aa12.29□□□□□ -0.44
UPF1-208ENST00000600012 SNAP47Q5SQN1 464 aa12.29□□□□□ -0.44
UPF1-208ENST00000600012 PLEKHS1Q5SXH7 462 aa12.29□□□□□ -0.44
UPF1-208ENST00000600012 CEACAM20Q6UY09 585 aa12.29□□□□□ -0.44
UPF1-208ENST00000600012 ZYG11AQ6WRX3 759 aa12.29□□□□□ -0.44
UPF1-208ENST00000600012 ARHGAP22Q7Z5H3 698 aa12.29□□□□□ -0.44
UPF1-208ENST00000600012 C11orf96Q7Z7L8 435 aa12.29□□□□□ -0.44
UPF1-208ENST00000600012 ISCA2Q86U28 154 aa12.29□□□□□ -0.44
UPF1-208ENST00000600012 PTRH1Q86Y79 214 aaKnown RBP12.29□□□□□ -0.44
UPF1-208ENST00000600012 KIAA1191Q96A73 305 aa12.29□□□□□ -0.44
UPF1-208ENST00000600012 ZNF514Q96K75 400 aaPredicted RBP12.29□□□□□ -0.44
UPF1-208ENST00000600012 MAGEB18Q96M61 343 aa12.29□□□□□ -0.44
UPF1-208ENST00000600012 MRPL57Q9BQC6 102 aaKnown RBP12.29□□□□□ -0.44
UPF1-208ENST00000600012 TFB2MQ9H5Q4 396 aaKnown RBP12.29□□□□□ -0.44
UPF1-208ENST00000600012 KLHL42Q9P2K6 505 aa12.29□□□□□ -0.44
UPF1-208ENST00000600012 ZNHIT2Q9UHR6 403 aa12.29□□□□□ -0.44
UPF1-208ENST00000600012 ANAPC2Q9UJX6 822 aa12.29□□□□□ -0.44
UPF1-208ENST00000600012 CDYLQ9Y232 598 aa12.29□□□□□ -0.44
UPF1-208ENST00000600012 SLC5A10A0PJK1 596 aa12.28□□□□□ -0.44
UPF1-208ENST00000600012 A8MU76 341 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms