RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 SOCS6O14544 535 aa13.03□□□□□ -0.32
TRIM28-211ENST00000597968 PRPF4O43172 522 aaKnown RBP eCLIP13.03□□□□□ -0.321e-16■■■■□ 24.2
TRIM28-211ENST00000597968 SEMA7AO75326 666 aa13.03□□□□□ -0.32
TRIM28-211ENST00000597968 MATN4O95460 622 aa13.03□□□□□ -0.32
TRIM28-211ENST00000597968 ERGP11308 486 aa13.03□□□□□ -0.32
TRIM28-211ENST00000597968 ETS1P14921 441 aa13.03□□□□□ -0.32
TRIM28-211ENST00000597968 TPSB2P20231 275 aa13.03□□□□□ -0.32
TRIM28-211ENST00000597968 RPL22P35268 128 aaKnown RBP13.03□□□□□ -0.32
TRIM28-211ENST00000597968 TSFMP43897 325 aaKnown RBP13.03□□□□□ -0.32
TRIM28-211ENST00000597968 CSE1LP55060 971 aaKnown RBP13.03□□□□□ -0.32
TRIM28-211ENST00000597968 OCA2Q04671 838 aa13.03□□□□□ -0.32
TRIM28-211ENST00000597968 RAPSNQ13702 412 aa13.03□□□□□ -0.32
TRIM28-211ENST00000597968 GBX1Q14549 363 aa13.03□□□□□ -0.32
TRIM28-211ENST00000597968 SLC9A5Q14940 896 aa13.03□□□□□ -0.32
TRIM28-211ENST00000597968 TPSAB1Q15661 275 aa13.03□□□□□ -0.32
TRIM28-211ENST00000597968 KCTD19Q17RG1 926 aaPredicted RBP13.03□□□□□ -0.32
TRIM28-211ENST00000597968 TYSND1Q2T9J0 566 aa13.03□□□□□ -0.32
TRIM28-211ENST00000597968 MUM1Q2TAK8 710 aa13.03□□□□□ -0.32
TRIM28-211ENST00000597968 EIF2S3LQ2VIR3 472 aaKnown RBP13.03□□□□□ -0.32
TRIM28-211ENST00000597968 LRRC8BQ6P9F7 803 aa13.03□□□□□ -0.32
TRIM28-211ENST00000597968 RNF44Q7L0R7 432 aa13.03□□□□□ -0.32
TRIM28-211ENST00000597968 ST6GALNAC3Q8NDV1 305 aa13.03□□□□□ -0.32
TRIM28-211ENST00000597968 OR2L3Q8NG85 312 aa13.03□□□□□ -0.32
TRIM28-211ENST00000597968 OR2A1Q8NGT9 310 aa13.03□□□□□ -0.32
TRIM28-211ENST00000597968 PRR7Q8TB68 274 aa13.03□□□□□ -0.32
TRIM28-211ENST00000597968 C1orf54Q8WWF1 131 aa13.03□□□□□ -0.32
TRIM28-211ENST00000597968 LMF1Q96S06 567 aa13.03□□□□□ -0.32
TRIM28-211ENST00000597968 EPS8L2Q9H6S3 715 aa13.03□□□□□ -0.32
TRIM28-211ENST00000597968 SLC6A20Q9NP91 592 aa13.03□□□□□ -0.32
TRIM28-211ENST00000597968 ASF1BQ9NVP2 202 aa13.03□□□□□ -0.32
TRIM28-211ENST00000597968 MAP10Q9P2G4 905 aa13.03□□□□□ -0.32
TRIM28-211ENST00000597968 KLHL42Q9P2K6 505 aa13.03□□□□□ -0.32
TRIM28-211ENST00000597968 ZNF282Q9UDV7 671 aaPredicted RBP13.03□□□□□ -0.32
TRIM28-211ENST00000597968 CDC14AQ9UNH5 594 aa13.03□□□□□ -0.32
TRIM28-211ENST00000597968 HS3ST3B1Q9Y662 390 aa13.03□□□□□ -0.32
TRIM28-211ENST00000597968 SHANK1Q9Y566 2161 aa13.03□□□□□ -0.32
TRIM28-211ENST00000597968 PCSK5Q92824 1860 aa13.02□□□□□ -0.32
TRIM28-211ENST00000597968 PCM1Q15154 2024 aa13.02□□□□□ -0.33
TRIM28-211ENST00000597968 IGLV3-12A0A075B6K2 115 aa13.02□□□□□ -0.33
TRIM28-211ENST00000597968 MAGEB16A2A368 324 aa13.02□□□□□ -0.33
TRIM28-211ENST00000597968 HYKKA2RU49 373 aa13.02□□□□□ -0.33
TRIM28-211ENST00000597968 TXNDC9O14530 226 aa13.02□□□□□ -0.33
TRIM28-211ENST00000597968 VPS26AO75436 327 aa13.02□□□□□ -0.33
TRIM28-211ENST00000597968 CTSBP07858 339 aa13.02□□□□□ -0.33
TRIM28-211ENST00000597968 PKMP14618 531 aaKnown RBP13.02□□□□□ -0.33
TRIM28-211ENST00000597968 PAMP19021 973 aa13.02□□□□□ -0.33
TRIM28-211ENST00000597968 OGNP20774 298 aaKnown RBP13.02□□□□□ -0.33
TRIM28-211ENST00000597968 ITGA3P26006 1051 aa13.02□□□□□ -0.33
TRIM28-211ENST00000597968 CMPK1P30085 196 aa13.02□□□□□ -0.33
TRIM28-211ENST00000597968 AP2B1P63010 937 aa13.02□□□□□ -0.33
TRIM28-211ENST00000597968 MRPL49Q13405 166 aaKnown RBP13.02□□□□□ -0.33
TRIM28-211ENST00000597968 SNX1Q13596 522 aa13.02□□□□□ -0.33
TRIM28-211ENST00000597968 NR6A1Q15406 480 aa13.02□□□□□ -0.33
TRIM28-211ENST00000597968 SIX1Q15475 284 aaPredicted RBP13.02□□□□□ -0.33
TRIM28-211ENST00000597968 ANKRD20A4Q4UJ75 823 aa13.02□□□□□ -0.33
TRIM28-211ENST00000597968 PRR30Q53SZ7 412 aaPredicted RBP13.02□□□□□ -0.33
TRIM28-211ENST00000597968 GARNL3Q5VVW2 1013 aa13.02□□□□□ -0.33
TRIM28-211ENST00000597968 RPUSD3Q6P087 351 aaKnown RBP13.02□□□□□ -0.33
TRIM28-211ENST00000597968 KIRREL2Q6UWL6 708 aa13.02□□□□□ -0.33
TRIM28-211ENST00000597968 NEK10Q6ZWH5 1172 aa13.02□□□□□ -0.33
TRIM28-211ENST00000597968 COX15Q7KZN9 410 aa13.02□□□□□ -0.33
TRIM28-211ENST00000597968 MAMDC2Q7Z304 686 aaPredicted RBP13.02□□□□□ -0.33
TRIM28-211ENST00000597968 CISD2Q8N5K1 135 aaKnown RBP13.02□□□□□ -0.33
TRIM28-211ENST00000597968 LKAAEAR1Q8TD35 194 aa13.02□□□□□ -0.33
TRIM28-211ENST00000597968 C5orf34Q96MH7 638 aa13.02□□□□□ -0.33
TRIM28-211ENST00000597968 BIRC8Q96P09 236 aa13.02□□□□□ -0.33
TRIM28-211ENST00000597968 ZFYVE21Q9BQ24 234 aa13.02□□□□□ -0.33
TRIM28-211ENST00000597968 ZNF304Q9HCX3 659 aa13.02□□□□□ -0.33
TRIM28-211ENST00000597968 FAM114A2Q9NRY5 505 aa13.02□□□□□ -0.33
TRIM28-211ENST00000597968 MARCH4Q9P2E8 410 aaPredicted RBP13.02□□□□□ -0.33
TRIM28-211ENST00000597968 FBXL4Q9UKA2 621 aa13.02□□□□□ -0.33
TRIM28-211ENST00000597968 RP1L1Q8IWN7 2480 aaPredicted RBP13.02□□□□□ -0.33
TRIM28-211ENST00000597968 OR2A25A4D2G3 310 aa13.01□□□□□ -0.33
TRIM28-211ENST00000597968 HPP00738 406 aa13.01□□□□□ -0.33
TRIM28-211ENST00000597968 LDLRP01130 860 aa13.01□□□□□ -0.33
TRIM28-211ENST00000597968 CYC1P08574 325 aa13.01□□□□□ -0.33
TRIM28-211ENST00000597968 MAGEA6P43360 314 aa13.01□□□□□ -0.33
TRIM28-211ENST00000597968 SESN2P58004 480 aaPredicted RBP13.01□□□□□ -0.33
TRIM28-211ENST00000597968 BASP1P80723 227 aaKnown RBP13.01□□□□□ -0.33
TRIM28-211ENST00000597968 TLR1Q15399 786 aa13.01□□□□□ -0.33
TRIM28-211ENST00000597968 RBBP7Q16576 425 aa13.01□□□□□ -0.33
TRIM28-211ENST00000597968 WASHC2DQ5SRD0 308 aa13.01□□□□□ -0.33
TRIM28-211ENST00000597968 KIAA0930Q6ICG6 404 aaPredicted RBP13.01□□□□□ -0.33
TRIM28-211ENST00000597968 GSTA5Q7RTV2 222 aa13.01□□□□□ -0.33
TRIM28-211ENST00000597968 CUZD1Q86UP6 607 aa13.01□□□□□ -0.33
TRIM28-211ENST00000597968 LMNTD2Q8IXW0 634 aa13.01□□□□□ -0.33
TRIM28-211ENST00000597968 KRT222Q8N1A0 295 aa13.01□□□□□ -0.33
TRIM28-211ENST00000597968 FBXO15Q8NCQ5 510 aaPredicted RBP13.01□□□□□ -0.33
TRIM28-211ENST00000597968 TRIM58Q8NG06 486 aa13.01□□□□□ -0.33
TRIM28-211ENST00000597968 SKA2Q8WVK7 121 aaPredicted RBP13.01□□□□□ -0.33
TRIM28-211ENST00000597968 SMPDL3AQ92484 453 aa13.01□□□□□ -0.33
TRIM28-211ENST00000597968 LPGAT1Q92604 370 aa13.01□□□□□ -0.33
TRIM28-211ENST00000597968 IL17FQ96PD4 163 aa13.01□□□□□ -0.33
TRIM28-211ENST00000597968 INTS10Q9NVR2 710 aaKnown RBP13.01□□□□□ -0.33
TRIM28-211ENST00000597968 LUZP4Q9P127 313 aa13.01□□□□□ -0.33
TRIM28-211ENST00000597968 SOX13Q9UN79 622 aa13.01□□□□□ -0.33
TRIM28-211ENST00000597968 ESPL1Q14674 2120 aa13.01□□□□□ -0.33
TRIM28-211ENST00000597968 FER1L5A0AVI2 2057 aa13□□□□□ -0.33
TRIM28-211ENST00000597968 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP13□□□□□ -0.33
TRIM28-211ENST00000597968 MYO1CO00159 1063 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms