RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 TRIM64A6NGJ6 449 aa14.88□□□□□ -0.03
UPF1-204ENST00000596842 SLC38A8A6NNN8 435 aa14.88□□□□□ -0.03
UPF1-204ENST00000596842 M0R129 80 aa14.88□□□□□ -0.03
UPF1-204ENST00000596842 KDELR3O43731 214 aa14.88□□□□□ -0.03
UPF1-204ENST00000596842 ALDH2P05091 517 aa14.88□□□□□ -0.03
UPF1-204ENST00000596842 NAT2P11245 290 aa14.88□□□□□ -0.03
UPF1-204ENST00000596842 PABPC1P11940 636 aaKnown RBP14.88□□□□□ -0.03
UPF1-204ENST00000596842 TNFRSF1BP20333 461 aa14.88□□□□□ -0.03
UPF1-204ENST00000596842 ITGALP20701 1170 aa14.88□□□□□ -0.03
UPF1-204ENST00000596842 ARF5P84085 180 aa14.88□□□□□ -0.03
UPF1-204ENST00000596842 MGAT3Q09327 533 aa14.88□□□□□ -0.03
UPF1-204ENST00000596842 KCNJ8Q15842 424 aa14.88□□□□□ -0.03
UPF1-204ENST00000596842 COLEC12Q5KU26 742 aa14.88□□□□□ -0.03
UPF1-204ENST00000596842 TPGS1Q6ZTW0 290 aa14.88□□□□□ -0.03
UPF1-204ENST00000596842 HS6ST3Q8IZP7 471 aa14.88□□□□□ -0.03
UPF1-204ENST00000596842 TRIB2Q92519 343 aa14.88□□□□□ -0.03
UPF1-204ENST00000596842 PYURFQ96I23 114 aa14.88□□□□□ -0.03
UPF1-204ENST00000596842 MTERF1Q99551 399 aaKnown RBP14.88□□□□□ -0.03
UPF1-204ENST00000596842 GPN2Q9H9Y4 310 aaPredicted RBP14.88□□□□□ -0.03
UPF1-204ENST00000596842 KRT84Q9NSB2 600 aa14.88□□□□□ -0.03
UPF1-204ENST00000596842 UCKL1Q9NWZ5 548 aa14.88□□□□□ -0.03
UPF1-204ENST00000596842 CAB39Q9Y376 341 aaPredicted RBP14.88□□□□□ -0.03
UPF1-204ENST00000596842 MANBAO00462 879 aa14.87□□□□□ -0.03
UPF1-204ENST00000596842 WDR47O94967 919 aa14.87□□□□□ -0.03
UPF1-204ENST00000596842 SCELO95171 688 aa14.87□□□□□ -0.03
UPF1-204ENST00000596842 VIPP01282 170 aa14.87□□□□□ -0.03
UPF1-204ENST00000596842 OPN1SWP03999 348 aa14.87□□□□□ -0.03
UPF1-204ENST00000596842 RPIAP49247 311 aa14.87□□□□□ -0.03
UPF1-204ENST00000596842 TUBA3CQ13748 450 aa14.87□□□□□ -0.03
UPF1-204ENST00000596842 CHRNA6Q15825 494 aa14.87□□□□□ -0.03
UPF1-204ENST00000596842 UBE2UQ5VVX9 321 aa14.87□□□□□ -0.03
UPF1-204ENST00000596842 LAIR2Q6ISS4 152 aa14.87□□□□□ -0.03
UPF1-204ENST00000596842 SLC24A5Q71RS6 500 aa14.87□□□□□ -0.03
UPF1-204ENST00000596842 B3GNT8Q7Z7M8 397 aa14.87□□□□□ -0.03
UPF1-204ENST00000596842 PIK3C3Q8NEB9 887 aa14.87□□□□□ -0.03
UPF1-204ENST00000596842 UTP15Q8TED0 518 aaKnown RBP14.87□□□□□ -0.03
UPF1-204ENST00000596842 FAR1Q8WVX9 515 aa14.87□□□□□ -0.03
UPF1-204ENST00000596842 C2orf78A6NCI8 922 aa14.87□□□□□ -0.03
UPF1-204ENST00000596842 COCHO43405 550 aa14.87□□□□□ -0.03
UPF1-204ENST00000596842 CLDN11O75508 207 aa14.87□□□□□ -0.03
UPF1-204ENST00000596842 KRT6AP02538 564 aa14.87□□□□□ -0.03
UPF1-204ENST00000596842 KRT6BP04259 564 aa14.87□□□□□ -0.03
UPF1-204ENST00000596842 BMP4P12644 408 aa14.87□□□□□ -0.03
UPF1-204ENST00000596842 POU2F1P14859 743 aa14.87□□□□□ -0.03
UPF1-204ENST00000596842 CD36P16671 472 aa14.87□□□□□ -0.03
UPF1-204ENST00000596842 DGKAP23743 735 aa14.87□□□□□ -0.03
UPF1-204ENST00000596842 SERPINB10P48595 397 aa14.87□□□□□ -0.03
UPF1-204ENST00000596842 KRT6CP48668 564 aa14.87□□□□□ -0.03
UPF1-204ENST00000596842 FLT3LGP49771 235 aa14.87□□□□□ -0.03
UPF1-204ENST00000596842 IFITM3Q01628 133 aa14.87□□□□□ -0.03
UPF1-204ENST00000596842 CTF1Q16619 201 aa14.87□□□□□ -0.03
UPF1-204ENST00000596842 MFSD14CQ5VZR4 134 aa14.87□□□□□ -0.03
UPF1-204ENST00000596842 TSPAN33Q86UF1 283 aa14.87□□□□□ -0.03
UPF1-204ENST00000596842 SPPL2AQ8TCT8 520 aa14.87□□□□□ -0.03
UPF1-204ENST00000596842 RHBDF1Q96CC6 855 aa14.87□□□□□ -0.03
UPF1-204ENST00000596842 KCNC2Q96PR1 638 aa14.87□□□□□ -0.03
UPF1-204ENST00000596842 DCAF13Q9NV06 445 aaKnown RBP14.87□□□□□ -0.03
UPF1-204ENST00000596842 TEKT2Q9UIF3 430 aa14.87□□□□□ -0.03
UPF1-204ENST00000596842 INTS6Q9UL03 887 aaKnown RBP14.87□□□□□ -0.03
UPF1-204ENST00000596842 SLC45A1Q9Y2W3 748 aa14.87□□□□□ -0.03
UPF1-204ENST00000596842 TPRKBQ9Y3C4 175 aa14.87□□□□□ -0.03
UPF1-204ENST00000596842 MYO7AQ13402 2215 aa14.87□□□□□ -0.03
UPF1-204ENST00000596842 GREB1Q4ZG55 1949 aa14.87□□□□□ -0.03
UPF1-204ENST00000596842 ARNTLO00327 626 aa14.87□□□□□ -0.03
UPF1-204ENST00000596842 SMAD6O43541 496 aaKnown RBP14.87□□□□□ -0.03
UPF1-204ENST00000596842 IL6P05231 212 aa14.87□□□□□ -0.03
UPF1-204ENST00000596842 MADCAM1Q13477 382 aa14.87□□□□□ -0.03
UPF1-204ENST00000596842 CADM3Q8N126 398 aa14.87□□□□□ -0.03
UPF1-204ENST00000596842 SVOPLQ8N434 492 aa14.87□□□□□ -0.03
UPF1-204ENST00000596842 ZBTB2Q8N680 514 aa14.87□□□□□ -0.03
UPF1-204ENST00000596842 MUL1Q969V5 352 aa14.87□□□□□ -0.03
UPF1-204ENST00000596842 DMRTB1Q96MA1 342 aa14.87□□□□□ -0.03
UPF1-204ENST00000596842 CD244Q9BZW8 370 aa14.87□□□□□ -0.03
UPF1-204ENST00000596842 ATP13A3Q9H7F0 1226 aa14.87□□□□□ -0.03
UPF1-204ENST00000596842 KAT8Q9H7Z6 458 aaKnown RBP14.87□□□□□ -0.03
UPF1-204ENST00000596842 MAGEE1Q9HCI5 957 aa14.87□□□□□ -0.03
UPF1-204ENST00000596842 IL17CQ9P0M4 197 aa14.87□□□□□ -0.03
UPF1-204ENST00000596842 LRFN2Q9ULH4 789 aa14.87□□□□□ -0.03
UPF1-204ENST00000596842 GPSM3Q9Y4H4 160 aa14.87□□□□□ -0.03
UPF1-204ENST00000596842 NINQ8N4C6 2090 aa14.87□□□□□ -0.03
UPF1-204ENST00000596842 ASNA1O43681 348 aa14.86□□□□□ -0.03
UPF1-204ENST00000596842 NPPAP01160 153 aa14.86□□□□□ -0.03
UPF1-204ENST00000596842 PRKACBP22694 351 aa14.86□□□□□ -0.03
UPF1-204ENST00000596842 CCND3P30281 292 aaPredicted RBP14.86□□□□□ -0.03
UPF1-204ENST00000596842 EPS8Q12929 822 aa14.86□□□□□ -0.03
UPF1-204ENST00000596842 HECTD3Q5T447 861 aa14.86□□□□□ -0.03
UPF1-204ENST00000596842 POC5Q8NA72 575 aa14.86□□□□□ -0.03
UPF1-204ENST00000596842 MCFD2Q8NI22 146 aa14.86□□□□□ -0.03
UPF1-204ENST00000596842 MAL2Q969L2 176 aa14.86□□□□□ -0.03
UPF1-204ENST00000596842 FKBP10Q96AY3 582 aa14.86□□□□□ -0.03
UPF1-204ENST00000596842 ACPTQ9BZG2 426 aa14.86□□□□□ -0.03
UPF1-204ENST00000596842 TDRD15B5MCY1 1934 aaKnown RBP14.86□□□□□ -0.03
UPF1-204ENST00000596842 SLC28A1O00337 649 aa14.86□□□□□ -0.03
UPF1-204ENST00000596842 IFI30P13284 250 aa14.86□□□□□ -0.03
UPF1-204ENST00000596842 ATF6P18850 670 aa14.86□□□□□ -0.03
UPF1-204ENST00000596842 CLCA4Q14CN2 919 aa14.86□□□□□ -0.03
UPF1-204ENST00000596842 SOWAHCQ53LP3 525 aaPredicted RBP14.86□□□□□ -0.03
UPF1-204ENST00000596842 RUNDC3AQ59EK9 446 aa14.86□□□□□ -0.03
UPF1-204ENST00000596842 ZNF691Q5VV52 312 aa14.86□□□□□ -0.03
UPF1-204ENST00000596842 HIPK1Q86Z02 1210 aa14.86□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms