RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 NDC80O14777 642 aa14.52□□□□□ -0.09
TRIM28-205ENST00000595028 ZSCAN9O15535 394 aaPredicted RBP14.52□□□□□ -0.09
TRIM28-205ENST00000595028 CTSBP07858 339 aa14.52□□□□□ -0.09
TRIM28-205ENST00000595028 MPC1LP0DKB6 136 aa14.52□□□□□ -0.09
TRIM28-205ENST00000595028 GABRB3P28472 473 aa14.52□□□□□ -0.09
TRIM28-205ENST00000595028 CASQ1P31415 396 aa14.52□□□□□ -0.09
TRIM28-205ENST00000595028 RPL21P46778 160 aaKnown RBP14.52□□□□□ -0.09
TRIM28-205ENST00000595028 RPS18P62269 152 aaKnown RBP14.52□□□□□ -0.09
TRIM28-205ENST00000595028 RPS15P62841 145 aaKnown RBP14.52□□□□□ -0.09
TRIM28-205ENST00000595028 ERV3-1Q14264 604 aa14.52□□□□□ -0.09
TRIM28-205ENST00000595028 SF1Q15637 639 aaKnown RBP14.52□□□□□ -0.09
TRIM28-205ENST00000595028 PTCHD3Q3KNS1 767 aa14.52□□□□□ -0.09
TRIM28-205ENST00000595028 HP1BP3Q5SSJ5 553 aaPredicted RBP14.52□□□□□ -0.09
TRIM28-205ENST00000595028 ZNF385CQ66K41 422 aaPredicted RBP14.52□□□□□ -0.09
TRIM28-205ENST00000595028 LCN10Q6JVE6 187 aa14.52□□□□□ -0.09
TRIM28-205ENST00000595028 GALNT7Q86SF2 657 aa14.52□□□□□ -0.09
TRIM28-205ENST00000595028 SYVN1Q86TM6 617 aa14.52□□□□□ -0.09
TRIM28-205ENST00000595028 SPNS2Q8IVW8 549 aa14.52□□□□□ -0.09
TRIM28-205ENST00000595028 CPNE9Q8IYJ1 553 aa14.52□□□□□ -0.09
TRIM28-205ENST00000595028 FBXO15Q8NCQ5 510 aaPredicted RBP14.52□□□□□ -0.09
TRIM28-205ENST00000595028 SPATA4Q8NEY3 305 aa14.52□□□□□ -0.09
TRIM28-205ENST00000595028 SEC14L1Q92503 715 aa14.52□□□□□ -0.09
TRIM28-205ENST00000595028 NDNQ99608 321 aa14.52□□□□□ -0.09
TRIM28-205ENST00000595028 DPH2Q9BQC3 489 aaPredicted RBP14.52□□□□□ -0.09
TRIM28-205ENST00000595028 SLC7A5P2Q9GIP4 190 aa14.52□□□□□ -0.09
TRIM28-205ENST00000595028 SPRTNQ9H040 489 aaPredicted RBP14.52□□□□□ -0.09
TRIM28-205ENST00000595028 GEMIN8Q9NWZ8 242 aaKnown RBP14.52□□□□□ -0.09
TRIM28-205ENST00000595028 EURLQ9NYK6 297 aa14.52□□□□□ -0.09
TRIM28-205ENST00000595028 SLC17A6Q9P2U8 582 aa14.52□□□□□ -0.09
TRIM28-205ENST00000595028 TRMT6Q9UJA5 497 aaKnown RBP14.52□□□□□ -0.09
TRIM28-205ENST00000595028 SRPK3Q9UPE1 567 aa14.52□□□□□ -0.09
TRIM28-205ENST00000595028 POLHQ9Y253 713 aa14.52□□□□□ -0.09
TRIM28-205ENST00000595028 ANKRD17O75179 2603 aaKnown RBP14.52□□□□□ -0.09
TRIM28-205ENST00000595028 E7ESA3 106 aa14.51□□□□□ -0.09
TRIM28-205ENST00000595028 FURINP09958 794 aa14.51□□□□□ -0.09
TRIM28-205ENST00000595028 RAB40ALP0C0E4 278 aa14.51□□□□□ -0.09
TRIM28-205ENST00000595028 CBSLP0DN79 551 aa14.51□□□□□ -0.09
TRIM28-205ENST00000595028 SFTPCP11686 197 aa14.51□□□□□ -0.09
TRIM28-205ENST00000595028 CBSP35520 551 aa14.51□□□□□ -0.09
TRIM28-205ENST00000595028 CARSP49589 748 aaKnown RBP14.51□□□□□ -0.09
TRIM28-205ENST00000595028 MRPS25P82663 173 aaKnown RBP14.51□□□□□ -0.09
TRIM28-205ENST00000595028 C2orf54Q08AI8 447 aa14.51□□□□□ -0.09
TRIM28-205ENST00000595028 KCNAB2Q13303 367 aa14.51□□□□□ -0.09
TRIM28-205ENST00000595028 IL10RAQ13651 578 aa14.51□□□□□ -0.09
TRIM28-205ENST00000595028 FASTKQ14296 549 aaKnown RBP14.51□□□□□ -0.09
TRIM28-205ENST00000595028 ARHGAP19Q14CB8 494 aa14.51□□□□□ -0.09
TRIM28-205ENST00000595028 RBM20Q5T481 1227 aaKnown RBP14.51□□□□□ -0.09
TRIM28-205ENST00000595028 FCRL6Q6DN72 434 aa14.51□□□□□ -0.09
TRIM28-205ENST00000595028 RHBDD2Q6NTF9 364 aa14.51□□□□□ -0.09
TRIM28-205ENST00000595028 TLDC1Q6P9B6 456 aa14.51□□□□□ -0.09
TRIM28-205ENST00000595028 TRMT10BQ6PF06 316 aaKnown RBP14.51□□□□□ -0.09
TRIM28-205ENST00000595028 FIGLAQ6QHK4 219 aa14.51□□□□□ -0.09
TRIM28-205ENST00000595028 SYT10Q6XYQ8 523 aa14.51□□□□□ -0.09
TRIM28-205ENST00000595028 PIWIL4Q7Z3Z4 852 aaKnown RBP14.51□□□□□ -0.09
TRIM28-205ENST00000595028 ENDOVQ8N8Q3 282 aaKnown RBP14.51□□□□□ -0.09
TRIM28-205ENST00000595028 OR2L3Q8NG85 312 aa14.51□□□□□ -0.09
TRIM28-205ENST00000595028 PROKR1Q8TCW9 393 aa14.51□□□□□ -0.09
TRIM28-205ENST00000595028 APOBEC4Q8WW27 367 aaKnown RBP14.51□□□□□ -0.09
TRIM28-205ENST00000595028 PKP4Q99569 1192 aa14.51□□□□□ -0.09
TRIM28-205ENST00000595028 IRAK4Q9NWZ3 460 aa14.51□□□□□ -0.09
TRIM28-205ENST00000595028 TUBD1Q9UJT1 453 aa14.51□□□□□ -0.09
TRIM28-205ENST00000595028 SNX24Q9Y343 169 aa14.51□□□□□ -0.09
TRIM28-205ENST00000595028 KLK4Q9Y5K2 254 aa14.51□□□□□ -0.09
TRIM28-205ENST00000595028 ANKRD12Q6UB98 2062 aa14.51□□□□□ -0.09
TRIM28-205ENST00000595028 CREBBPQ92793 2442 aa14.5□□□□□ -0.09
TRIM28-205ENST00000595028 FAM187AA6NFU0 413 aa14.5□□□□□ -0.09
TRIM28-205ENST00000595028 C9J4A7 227 aa14.5□□□□□ -0.09
TRIM28-205ENST00000595028 RAD51CO43502 376 aa14.5□□□□□ -0.09
TRIM28-205ENST00000595028 CAPN1P07384 714 aa14.5□□□□□ -0.09
TRIM28-205ENST00000595028 MCM3P25205 808 aa14.5□□□□□ -0.09
TRIM28-205ENST00000595028 GRIA3P42263 894 aa14.5□□□□□ -0.09
TRIM28-205ENST00000595028 GCGRP47871 477 aa14.5□□□□□ -0.09
TRIM28-205ENST00000595028 TIAL1Q01085 375 aaKnown RBP eCLIP14.5□□□□□ -0.09
TRIM28-205ENST00000595028 PDIA2Q13087 525 aaKnown RBP14.5□□□□□ -0.09
TRIM28-205ENST00000595028 FRG1Q14331 258 aaKnown RBP14.5□□□□□ -0.09
TRIM28-205ENST00000595028 NAA25Q14CX7 972 aa14.5□□□□□ -0.09
TRIM28-205ENST00000595028 FASTKD3Q14CZ7 662 aaKnown RBP14.5□□□□□ -0.09
TRIM28-205ENST00000595028 NCF4Q15080 339 aa14.5□□□□□ -0.09
TRIM28-205ENST00000595028 UGT8Q16880 541 aa14.5□□□□□ -0.09
TRIM28-205ENST00000595028 TEDDM1Q5T9Z0 273 aa14.5□□□□□ -0.09
TRIM28-205ENST00000595028 LRRC8EQ6NSJ5 796 aa14.5□□□□□ -0.09
TRIM28-205ENST00000595028 UGT3A1Q6NUS8 523 aa14.5□□□□□ -0.09
TRIM28-205ENST00000595028 ZNF655Q8N720 491 aaPredicted RBP14.5□□□□□ -0.09
TRIM28-205ENST00000595028 BBOF1Q8ND07 529 aa14.5□□□□□ -0.09
TRIM28-205ENST00000595028 OR2A1Q8NGT9 310 aa14.5□□□□□ -0.09
TRIM28-205ENST00000595028 ASB11Q8WXH4 323 aa14.5□□□□□ -0.09
TRIM28-205ENST00000595028 SMPDL3AQ92484 453 aa14.5□□□□□ -0.09
TRIM28-205ENST00000595028 GBP5Q96PP8 586 aa14.5□□□□□ -0.09
TRIM28-205ENST00000595028 MIPEPQ99797 713 aa14.5□□□□□ -0.09
TRIM28-205ENST00000595028 NLNQ9BYT8 704 aa14.5□□□□□ -0.09
TRIM28-205ENST00000595028 PPANQ9NQ55 473 aaKnown RBP14.5□□□□□ -0.09
TRIM28-205ENST00000595028 TAS2R13Q9NYV9 303 aa14.5□□□□□ -0.09
TRIM28-205ENST00000595028 SNX7Q9UNH6 387 aa14.5□□□□□ -0.09
TRIM28-205ENST00000595028 FARSAQ9Y285 508 aaKnown RBP14.5□□□□□ -0.09
TRIM28-205ENST00000595028 NBASA2RRP1 2371 aa14.49□□□□□ -0.09
TRIM28-205ENST00000595028 ZNF839A8K0R7 811 aa14.49□□□□□ -0.09
TRIM28-205ENST00000595028 TARM1B6A8C7 271 aa14.49□□□□□ -0.09
TRIM28-205ENST00000595028 GFYI3L273 518 aa14.49□□□□□ -0.09
TRIM28-205ENST00000595028 CTSVO60911 334 aa14.49□□□□□ -0.09
TRIM28-205ENST00000595028 SLC16A8O95907 504 aa14.49□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms