RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 MTO1Q9Y2Z2 717 aaKnown RBP11.46□□□□□ -0.57
LIG3-213ENST00000590630 PCDHB3Q9Y5E6 796 aa11.46□□□□□ -0.57
LIG3-213ENST00000590630 KLK4Q9Y5K2 254 aa11.46□□□□□ -0.57
LIG3-213ENST00000590630 E7ENX8 843 aa11.45□□□□□ -0.58
LIG3-213ENST00000590630 CPNE3O75131 537 aaKnown RBP11.45□□□□□ -0.58
LIG3-213ENST00000590630 SCRG1O75711 98 aa11.45□□□□□ -0.58
LIG3-213ENST00000590630 CCNDBP1O95273 360 aa11.45□□□□□ -0.58
LIG3-213ENST00000590630 TIAF1O95411 115 aa11.45□□□□□ -0.58
LIG3-213ENST00000590630 ENO2P09104 434 aaPredicted RBP11.45□□□□□ -0.58
LIG3-213ENST00000590630 STMN1P16949 149 aa11.45□□□□□ -0.58
LIG3-213ENST00000590630 PSMB5P28074 263 aa11.45□□□□□ -0.58
LIG3-213ENST00000590630 IMPA1P29218 277 aa11.45□□□□□ -0.58
LIG3-213ENST00000590630 CMPK1P30085 196 aa11.45□□□□□ -0.58
LIG3-213ENST00000590630 RPA3P35244 121 aaPredicted RBP11.45□□□□□ -0.58
LIG3-213ENST00000590630 PGGT1BP53609 377 aa11.45□□□□□ -0.58
LIG3-213ENST00000590630 ITGA1P56199 1179 aa11.45□□□□□ -0.58
LIG3-213ENST00000590630 TAP2Q03519 686 aa11.45□□□□□ -0.58
LIG3-213ENST00000590630 ABHD18Q0P651 414 aa11.45□□□□□ -0.58
LIG3-213ENST00000590630 USP10Q14694 798 aaKnown RBP11.45□□□□□ -0.58
LIG3-213ENST00000590630 SLMAPQ14BN4 828 aa11.45□□□□□ -0.58
LIG3-213ENST00000590630 COL28A1Q2UY09 1125 aa11.45□□□□□ -0.58
LIG3-213ENST00000590630 KIAA1614Q5VZ46 1190 aa11.45□□□□□ -0.58
LIG3-213ENST00000590630 C19orf48Q6RUI8 117 aa11.45□□□□□ -0.58
LIG3-213ENST00000590630 TMEM207Q6UWW9 146 aa11.45□□□□□ -0.58
LIG3-213ENST00000590630 C6orf15Q6UXA7 325 aaPredicted RBP11.45□□□□□ -0.58
LIG3-213ENST00000590630 CCDC81Q6ZN84 652 aa11.45□□□□□ -0.58
LIG3-213ENST00000590630 TIPARPQ7Z3E1 657 aaKnown RBP11.45□□□□□ -0.58
LIG3-213ENST00000590630 TMEM126BQ8IUX1 230 aa11.45□□□□□ -0.58
LIG3-213ENST00000590630 CEP97Q8IW35 865 aa11.45□□□□□ -0.58
LIG3-213ENST00000590630 GPR135Q8IZ08 494 aa11.45□□□□□ -0.58
LIG3-213ENST00000590630 KIAA1143Q96AT1 154 aaPredicted RBP11.45□□□□□ -0.58
LIG3-213ENST00000590630 MIPEPQ99797 713 aa11.45□□□□□ -0.58
LIG3-213ENST00000590630 FUT8Q9BYC5 575 aa11.45□□□□□ -0.58
LIG3-213ENST00000590630 TRIM54Q9BYV2 358 aa11.45□□□□□ -0.58
LIG3-213ENST00000590630 CDC42EP4Q9H3Q1 356 aaKnown RBP11.45□□□□□ -0.58
LIG3-213ENST00000590630 ACSS3Q9H6R3 686 aa11.45□□□□□ -0.58
LIG3-213ENST00000590630 FAM60AQ9NP50 221 aa11.45□□□□□ -0.58
LIG3-213ENST00000590630 WDR70Q9NW82 654 aa11.45□□□□□ -0.58
LIG3-213ENST00000590630 NFU1Q9UMS0 254 aa11.45□□□□□ -0.58
LIG3-213ENST00000590630 NOVA2Q9UNW9 492 aaKnown RBP11.45□□□□□ -0.58
LIG3-213ENST00000590630 FER1L5A0AVI2 2057 aa11.45□□□□□ -0.58
LIG3-213ENST00000590630 E7EQ34 232 aa11.44□□□□□ -0.58
LIG3-213ENST00000590630 ACSL3O95573 720 aa11.44□□□□□ -0.58
LIG3-213ENST00000590630 CCNYL3P0C7X3 344 aa11.44□□□□□ -0.58
LIG3-213ENST00000590630 CCND1P24385 295 aa11.44□□□□□ -0.58
LIG3-213ENST00000590630 STAT5AP42229 794 aa11.44□□□□□ -0.58
LIG3-213ENST00000590630 GRIA3P42263 894 aa11.44□□□□□ -0.58
LIG3-213ENST00000590630 GABRA4P48169 554 aa11.44□□□□□ -0.58
LIG3-213ENST00000590630 VAC14Q08AM6 782 aa11.44□□□□□ -0.58
LIG3-213ENST00000590630 TSTA3Q13630 321 aaPredicted RBP11.44□□□□□ -0.58
LIG3-213ENST00000590630 ZNF460Q14592 562 aa11.44□□□□□ -0.58
LIG3-213ENST00000590630 EFTUD2Q15029 972 aaKnown RBP eCLIP11.44□□□□□ -0.582e-6■■■□□ 19.1
LIG3-213ENST00000590630 ZKSCAN8Q15776 578 aaPredicted RBP11.44□□□□□ -0.58
LIG3-213ENST00000590630 PHKG1Q16816 387 aa11.44□□□□□ -0.58
LIG3-213ENST00000590630 ZC3H12BQ5HYM0 836 aaKnown RBP11.44□□□□□ -0.58
LIG3-213ENST00000590630 ICE2Q659A1 982 aa11.44□□□□□ -0.58
LIG3-213ENST00000590630 FIGLAQ6QHK4 219 aa11.44□□□□□ -0.58
LIG3-213ENST00000590630 SUSD1Q6UWL2 747 aa11.44□□□□□ -0.58
LIG3-213ENST00000590630 SBSNQ6UWP8 590 aa11.44□□□□□ -0.58
LIG3-213ENST00000590630 ADAMTSL2Q86TH1 951 aa11.44□□□□□ -0.58
LIG3-213ENST00000590630 VASH2Q86V25 355 aa11.44□□□□□ -0.58
LIG3-213ENST00000590630 FAM20CQ8IXL6 584 aa11.44□□□□□ -0.58
LIG3-213ENST00000590630 LRRC56Q8IYG6 542 aaPredicted RBP11.44□□□□□ -0.58
LIG3-213ENST00000590630 DNAJC22Q8N4W6 341 aa11.44□□□□□ -0.58
LIG3-213ENST00000590630 EIF1ADQ8N9N8 165 aaKnown RBP11.44□□□□□ -0.58
LIG3-213ENST00000590630 GALNT6Q8NCL4 622 aa11.44□□□□□ -0.58
LIG3-213ENST00000590630 LRRN4CLQ8ND94 238 aa11.44□□□□□ -0.58
LIG3-213ENST00000590630 OR1L3Q8NH93 324 aa11.44□□□□□ -0.58
LIG3-213ENST00000590630 SNRNP27Q8WVK2 155 aaKnown RBP11.44□□□□□ -0.58
LIG3-213ENST00000590630 ATL1Q8WXF7 558 aa11.44□□□□□ -0.58
LIG3-213ENST00000590630 LRFN5Q96NI6 719 aa11.44□□□□□ -0.58
LIG3-213ENST00000590630 EFHD1Q9BUP0 239 aa11.44□□□□□ -0.58
LIG3-213ENST00000590630 ACAT2Q9BWD1 397 aa11.44□□□□□ -0.58
LIG3-213ENST00000590630 PCBD2Q9H0N5 130 aa11.44□□□□□ -0.58
LIG3-213ENST00000590630 CAB39LQ9H9S4 337 aa11.44□□□□□ -0.58
LIG3-213ENST00000590630 MRPS30Q9NP92 439 aaKnown RBP11.44□□□□□ -0.58
LIG3-213ENST00000590630 CCDC177Q9NQR7 707 aaPredicted RBP11.44□□□□□ -0.58
LIG3-213ENST00000590630 ARL15Q9NXU5 204 aa11.44□□□□□ -0.58
LIG3-213ENST00000590630 UTP6Q9NYH9 597 aaKnown RBP11.44□□□□□ -0.58
LIG3-213ENST00000590630 STOX2Q9P2F5 926 aaPredicted RBP11.44□□□□□ -0.58
LIG3-213ENST00000590630 ANKMY1Q9P2S6 941 aa11.44□□□□□ -0.58
LIG3-213ENST00000590630 TAC3Q9UHF0 121 aa11.44□□□□□ -0.58
LIG3-213ENST00000590630 PADI1Q9ULC6 663 aa11.44□□□□□ -0.58
LIG3-213ENST00000590630 PLCL2Q9UPR0 1127 aa11.44□□□□□ -0.58
LIG3-213ENST00000590630 KLHL20Q9Y2M5 609 aa11.44□□□□□ -0.58
LIG3-213ENST00000590630 AP1M2Q9Y6Q5 423 aa11.44□□□□□ -0.58
LIG3-213ENST00000590630 TEX51A0A1B0GUA7 166 aa11.43□□□□□ -0.58
LIG3-213ENST00000590630 ESPNB1AK53 854 aa11.43□□□□□ -0.58
LIG3-213ENST00000590630 H3BMH7 237 aa11.43□□□□□ -0.58
LIG3-213ENST00000590630 K7ENP7 123 aa11.43□□□□□ -0.58
LIG3-213ENST00000590630 FAM155BO75949 473 aa11.43□□□□□ -0.58
LIG3-213ENST00000590630 OR2B3O76000 313 aa11.43□□□□□ -0.58
LIG3-213ENST00000590630 WISP3O95389 354 aaPredicted RBP11.43□□□□□ -0.58
LIG3-213ENST00000590630 NTRK1P04629 796 aa11.43□□□□□ -0.58
LIG3-213ENST00000590630 HBQ1P09105 142 aa11.43□□□□□ -0.58
LIG3-213ENST00000590630 RAB10P61026 200 aa11.43□□□□□ -0.58
LIG3-213ENST00000590630 TBPL1P62380 186 aa11.43□□□□□ -0.58
LIG3-213ENST00000590630 CXADRP78310 365 aa11.43□□□□□ -0.58
LIG3-213ENST00000590630 ABATP80404 500 aa11.43□□□□□ -0.58
LIG3-213ENST00000590630 PRDX1Q06830 199 aaKnown RBP11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms