RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 HABP4Q5JVS0 413 aaKnown RBP13.75□□□□□ -0.21
LIG3-205ENST00000585941 PRAMEF9Q5VWM5 478 aa13.75□□□□□ -0.21
LIG3-205ENST00000585941 METRNLQ641Q3 311 aa13.75□□□□□ -0.21
LIG3-205ENST00000585941 KIAA1211LQ6NV74 962 aa13.75□□□□□ -0.21
LIG3-205ENST00000585941 DOK6Q6PKX4 331 aa13.75□□□□□ -0.21
LIG3-205ENST00000585941 USP30Q70CQ3 517 aa13.75□□□□□ -0.21
LIG3-205ENST00000585941 CACUL1Q86Y37 369 aa13.75□□□□□ -0.21
LIG3-205ENST00000585941 DCUN1D3Q8IWE4 304 aa13.75□□□□□ -0.21
LIG3-205ENST00000585941 TP53I13Q8NBR0 393 aaPredicted RBP13.75□□□□□ -0.21
LIG3-205ENST00000585941 CATSPER1Q8NEC5 780 aa13.75□□□□□ -0.21
LIG3-205ENST00000585941 OR14C36Q8NHC7 312 aa13.75□□□□□ -0.21
LIG3-205ENST00000585941 WDR20Q8TBZ3 569 aa13.75□□□□□ -0.21
LIG3-205ENST00000585941 SLC13A3Q8WWT9 602 aa13.75□□□□□ -0.21
LIG3-205ENST00000585941 TMEM125Q96AQ2 219 aa13.75□□□□□ -0.21
LIG3-205ENST00000585941 WDR34Q96EX3 536 aa13.75□□□□□ -0.21
LIG3-205ENST00000585941 MSANTD3Q96H12 275 aa13.75□□□□□ -0.21
LIG3-205ENST00000585941 LRCH3Q96II8 777 aa13.75□□□□□ -0.21
LIG3-205ENST00000585941 FCRL1Q96LA6 429 aa13.75□□□□□ -0.21
LIG3-205ENST00000585941 OR4K3Q96R72 315 aa13.75□□□□□ -0.21
LIG3-205ENST00000585941 ZNF184Q99676 751 aaPredicted RBP13.75□□□□□ -0.21
LIG3-205ENST00000585941 EFHD1Q9BUP0 239 aa13.75□□□□□ -0.21
LIG3-205ENST00000585941 EFCAB11Q9BUY7 163 aa13.75□□□□□ -0.21
LIG3-205ENST00000585941 ZDHHC5Q9C0B5 715 aa13.75□□□□□ -0.21
LIG3-205ENST00000585941 MKRN2Q9H000 416 aaKnown RBP13.75□□□□□ -0.21
LIG3-205ENST00000585941 CLMPQ9H6B4 373 aa13.75□□□□□ -0.21
LIG3-205ENST00000585941 ZFR2Q9UPR6 939 aaKnown RBP13.75□□□□□ -0.21
LIG3-205ENST00000585941 MAPRE3Q9UPY8 281 aa13.75□□□□□ -0.21
LIG3-205ENST00000585941 NCKAP1Q9Y2A7 1128 aa13.75□□□□□ -0.21
LIG3-205ENST00000585941 PIAS3Q9Y6X2 628 aa13.75□□□□□ -0.21
LIG3-205ENST00000585941 ATG2BQ96BY7 2078 aa13.75□□□□□ -0.21
LIG3-205ENST00000585941 TMEM265A0A087WTH1 108 aa13.75□□□□□ -0.21
LIG3-205ENST00000585941 KRT87PA6NCN2 255 aa13.75□□□□□ -0.21
LIG3-205ENST00000585941 AQP12BA6NM10 295 aa13.75□□□□□ -0.21
LIG3-205ENST00000585941 PRMT3O60678 531 aa13.75□□□□□ -0.21
LIG3-205ENST00000585941 KCNH1O95259 989 aa13.75□□□□□ -0.21
LIG3-205ENST00000585941 EGFP01133 1207 aa13.75□□□□□ -0.21
LIG3-205ENST00000585941 TBPL1P62380 186 aa13.75□□□□□ -0.21
LIG3-205ENST00000585941 MRPS22P82650 360 aaKnown RBP13.75□□□□□ -0.21
LIG3-205ENST00000585941 LAPTM5Q13571 262 aa13.75□□□□□ -0.21
LIG3-205ENST00000585941 CAPRIN1Q14444 709 aaKnown RBP13.75□□□□□ -0.21
LIG3-205ENST00000585941 PON2Q15165 354 aa13.75□□□□□ -0.21
LIG3-205ENST00000585941 AASDHQ4L235 1098 aaPredicted RBP13.75□□□□□ -0.21
LIG3-205ENST00000585941 SLCO4C1Q6ZQN7 724 aa13.75□□□□□ -0.21
LIG3-205ENST00000585941 MSANTD1Q6ZTZ1 278 aa13.75□□□□□ -0.21
LIG3-205ENST00000585941 HORMAD1Q86X24 394 aa13.75□□□□□ -0.21
LIG3-205ENST00000585941 AQP12AQ8IXF9 295 aa13.75□□□□□ -0.21
LIG3-205ENST00000585941 FAM156AQ8NDB6 213 aa13.75□□□□□ -0.21
LIG3-205ENST00000585941 PHC3Q8NDX5 983 aa13.75□□□□□ -0.21
LIG3-205ENST00000585941 STARD8Q92502 1023 aa13.75□□□□□ -0.21
LIG3-205ENST00000585941 FOXJ1Q92949 421 aa13.75□□□□□ -0.21
LIG3-205ENST00000585941 SLC17A9Q9BYT1 436 aa13.75□□□□□ -0.21
LIG3-205ENST00000585941 MBNL1Q9NR56 388 aaKnown RBP13.75□□□□□ -0.21
LIG3-205ENST00000585941 SPATA6Q9NWH7 488 aaPredicted RBP13.75□□□□□ -0.21
LIG3-205ENST00000585941 CMTM6Q9NX76 183 aa13.75□□□□□ -0.21
LIG3-205ENST00000585941 ACTR3BQ9P1U1 418 aa13.75□□□□□ -0.21
LIG3-205ENST00000585941 VPS29Q9UBQ0 182 aa13.75□□□□□ -0.21
LIG3-205ENST00000585941 RUVBL1Q9Y265 456 aaKnown RBP13.75□□□□□ -0.21
LIG3-205ENST00000585941 ASF1AQ9Y294 204 aa13.75□□□□□ -0.21
LIG3-205ENST00000585941 BRWD1Q9NSI6 2320 aa13.74□□□□□ -0.21
LIG3-205ENST00000585941 A0A1W2PQF6 199 aa13.74□□□□□ -0.21
LIG3-205ENST00000585941 A0A1W2PQU0 124 aa13.74□□□□□ -0.21
LIG3-205ENST00000585941 TCRBV3S1A0A5B6 114 aa13.74□□□□□ -0.21
LIG3-205ENST00000585941 RNGTTO60942 597 aaKnown RBP13.74□□□□□ -0.21
LIG3-205ENST00000585941 ADAM23O75077 832 aa13.74□□□□□ -0.21
LIG3-205ENST00000585941 MYO1DO94832 1006 aa13.74□□□□□ -0.21
LIG3-205ENST00000585941 PAK4O96013 591 aaPredicted RBP13.74□□□□□ -0.21
LIG3-205ENST00000585941 AMD1P17707 334 aa13.74□□□□□ -0.21
LIG3-205ENST00000585941 CD22P20273 847 aa13.74□□□□□ -0.21
LIG3-205ENST00000585941 NEK2P51955 445 aa13.74□□□□□ -0.21
LIG3-205ENST00000585941 ADPRHP54922 357 aa13.74□□□□□ -0.21
LIG3-205ENST00000585941 PTGR1Q14914 329 aa13.74□□□□□ -0.21
LIG3-205ENST00000585941 MAPKAPK3Q16644 382 aa13.74□□□□□ -0.21
LIG3-205ENST00000585941 HIST2H2ACQ16777 129 aaPredicted RBP13.74□□□□□ -0.21
LIG3-205ENST00000585941 DPY19L1Q2PZI1 675 aa13.74□□□□□ -0.21
LIG3-205ENST00000585941 PLA2G4EQ3MJ16 856 aa13.74□□□□□ -0.21
LIG3-205ENST00000585941 FBXO43Q4G163 708 aa13.74□□□□□ -0.21
LIG3-205ENST00000585941 C6orf10Q5SRN2 563 aa13.74□□□□□ -0.21
LIG3-205ENST00000585941 ATG9BQ674R7 924 aa13.74□□□□□ -0.21
LIG3-205ENST00000585941 HIST2H2AA3Q6FI13 130 aa13.74□□□□□ -0.21
LIG3-205ENST00000585941 NANOGP8Q6NSW7 305 aa13.74□□□□□ -0.21
LIG3-205ENST00000585941 MED27Q6P2C8 311 aa13.74□□□□□ -0.21
LIG3-205ENST00000585941 FAM83HQ6ZRV2 1179 aaPredicted RBP13.74□□□□□ -0.21
LIG3-205ENST00000585941 LPCAT2Q7L5N7 544 aa13.74□□□□□ -0.21
LIG3-205ENST00000585941 PLCD3Q8N3E9 789 aa13.74□□□□□ -0.21
LIG3-205ENST00000585941 OR8J3Q8NGG0 315 aa13.74□□□□□ -0.21
LIG3-205ENST00000585941 OR2T34Q8NGX1 318 aa13.74□□□□□ -0.21
LIG3-205ENST00000585941 TFGQ92734 400 aaPredicted RBP13.74□□□□□ -0.21
LIG3-205ENST00000585941 UBE2E3Q969T4 207 aa13.74□□□□□ -0.21
LIG3-205ENST00000585941 TESCQ96BS2 214 aa13.74□□□□□ -0.21
LIG3-205ENST00000585941 SH3GL1Q99961 368 aa13.74□□□□□ -0.21
LIG3-205ENST00000585941 TIMM29Q9BSF4 260 aa13.74□□□□□ -0.21
LIG3-205ENST00000585941 HAUS8Q9BT25 410 aa13.74□□□□□ -0.21
LIG3-205ENST00000585941 LGR4Q9BXB1 951 aa13.74□□□□□ -0.21
LIG3-205ENST00000585941 KLHL4Q9C0H6 718 aa13.74□□□□□ -0.21
LIG3-205ENST00000585941 PCDHAC1Q9H158 963 aa13.74□□□□□ -0.21
LIG3-205ENST00000585941 NANOGQ9H9S0 305 aa13.74□□□□□ -0.21
LIG3-205ENST00000585941 SGK2Q9HBY8 427 aa13.74□□□□□ -0.21
LIG3-205ENST00000585941 CCDC177Q9NQR7 707 aaPredicted RBP13.74□□□□□ -0.21
LIG3-205ENST00000585941 REV3LO60673 3130 aa13.73□□□□□ -0.21
LIG3-205ENST00000585941 PRSS51A0A1B0GVH4 220 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms