RNA–Protein interactions for RNA: ENST00000585740.5

LIG3-204, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-204ENST00000585740 PKP2Q99959 881 aa10.94□□□□□ -0.66
LIG3-204ENST00000585740 TRMT61BQ9BVS5 477 aaKnown RBP10.94□□□□□ -0.66
LIG3-204ENST00000585740 ATG10Q9H0Y0 220 aa10.94□□□□□ -0.66
LIG3-204ENST00000585740 RSPH9Q9H1X1 276 aaPredicted RBP10.94□□□□□ -0.66
LIG3-204ENST00000585740 RMND5AQ9H871 391 aa10.94□□□□□ -0.66
LIG3-204ENST00000585740 NANOGQ9H9S0 305 aa10.94□□□□□ -0.66
LIG3-204ENST00000585740 FBRSQ9HAH7 460 aa10.94□□□□□ -0.66
LIG3-204ENST00000585740 BRF2Q9HAW0 419 aa10.94□□□□□ -0.66
LIG3-204ENST00000585740 C8orf4Q9NR00 106 aa10.94□□□□□ -0.66
LIG3-204ENST00000585740 FARSBQ9NSD9 589 aaKnown RBP10.94□□□□□ -0.66
LIG3-204ENST00000585740 CCM2LQ9NUG4 571 aaPredicted RBP10.94□□□□□ -0.66
LIG3-204ENST00000585740 SCOCQ9UIL1 159 aa10.94□□□□□ -0.66
LIG3-204ENST00000585740 MAGEL2Q9UJ55 1249 aa10.94□□□□□ -0.66
LIG3-204ENST00000585740 DYRK1BQ9Y463 629 aa10.94□□□□□ -0.66
LIG3-204ENST00000585740 PCDHGA11Q9Y5H2 935 aa10.94□□□□□ -0.66
LIG3-204ENST00000585740 KCNE2Q9Y6J6 123 aa10.94□□□□□ -0.66
LIG3-204ENST00000585740 TRANK1O15050 2925 aa10.94□□□□□ -0.66
LIG3-204ENST00000585740 CROCCQ5TZA2 2017 aa10.94□□□□□ -0.66
LIG3-204ENST00000585740 TRPM6Q9BX84 2022 aa10.94□□□□□ -0.66
LIG3-204ENST00000585740 DHRS12A0PJE2 317 aa10.93□□□□□ -0.66
LIG3-204ENST00000585740 PRR33A8MZF0 331 aa10.93□□□□□ -0.66
LIG3-204ENST00000585740 ARPC2O15144 300 aa10.93□□□□□ -0.66
LIG3-204ENST00000585740 ERN1O75460 977 aaKnown RBP10.93□□□□□ -0.66
LIG3-204ENST00000585740 GMNNO75496 209 aa10.93□□□□□ -0.66
LIG3-204ENST00000585740 RNASEH2AO75792 299 aaKnown RBP10.93□□□□□ -0.66
LIG3-204ENST00000585740 POP7O75817 140 aaKnown RBP10.93□□□□□ -0.66
LIG3-204ENST00000585740 RPN2P04844 631 aa10.93□□□□□ -0.66
LIG3-204ENST00000585740 PGRP06401 933 aa10.93□□□□□ -0.66
LIG3-204ENST00000585740 LAMP2P13473 410 aa10.93□□□□□ -0.66
LIG3-204ENST00000585740 AMD1P17707 334 aa10.93□□□□□ -0.66
LIG3-204ENST00000585740 ATP6V1B2P21281 511 aa10.93□□□□□ -0.66
LIG3-204ENST00000585740 IMPA1P29218 277 aa10.93□□□□□ -0.66
LIG3-204ENST00000585740 GRIA3P42263 894 aa10.93□□□□□ -0.66
LIG3-204ENST00000585740 BDKRB1P46663 353 aa10.93□□□□□ -0.66
LIG3-204ENST00000585740 METAP1P53582 386 aa10.93□□□□□ -0.66
LIG3-204ENST00000585740 ATXN3P54252 364 aaPredicted RBP10.93□□□□□ -0.66
LIG3-204ENST00000585740 AQP4P55087 323 aa10.93□□□□□ -0.66
LIG3-204ENST00000585740 CNTN1Q12860 1018 aa10.93□□□□□ -0.66
LIG3-204ENST00000585740 CAMK2GQ13555 558 aaPredicted RBP10.93□□□□□ -0.66
LIG3-204ENST00000585740 LAPTM5Q13571 262 aa10.93□□□□□ -0.66
LIG3-204ENST00000585740 E2F2Q14209 437 aa10.93□□□□□ -0.66
LIG3-204ENST00000585740 CST6Q15828 149 aa10.93□□□□□ -0.66
LIG3-204ENST00000585740 ZXDCQ2QGD7 858 aaPredicted RBP10.93□□□□□ -0.66
LIG3-204ENST00000585740 XKR6Q5GH73 641 aa10.93□□□□□ -0.66
LIG3-204ENST00000585740 PAGE2BQ5JRK9 111 aa10.93□□□□□ -0.66
LIG3-204ENST00000585740 ZNF776Q68DI1 518 aaPredicted RBP10.93□□□□□ -0.66
LIG3-204ENST00000585740 PNCKQ6P2M8 343 aa10.93□□□□□ -0.66
LIG3-204ENST00000585740 SLC2A7Q6PXP3 512 aa10.93□□□□□ -0.66
LIG3-204ENST00000585740 DLEU7Q6UYE1 221 aa10.93□□□□□ -0.66
LIG3-204ENST00000585740 CYP2R1Q6VVX0 501 aa10.93□□□□□ -0.66
LIG3-204ENST00000585740 OR9A1PQ8NGU1 263 aa10.93□□□□□ -0.66
LIG3-204ENST00000585740 SETD7Q8WTS6 366 aaKnown RBP10.93□□□□□ -0.66
LIG3-204ENST00000585740 TESCQ96BS2 214 aa10.93□□□□□ -0.66
LIG3-204ENST00000585740 PYCR2Q96C36 320 aa10.93□□□□□ -0.66
LIG3-204ENST00000585740 MTFMTQ96DP5 389 aaKnown RBP10.93□□□□□ -0.66
LIG3-204ENST00000585740 SLC45A3Q96JT2 553 aa10.93□□□□□ -0.66
LIG3-204ENST00000585740 PKP4Q99569 1192 aa10.93□□□□□ -0.66
LIG3-204ENST00000585740 PLA2G2FQ9BZM2 168 aa10.93□□□□□ -0.66
LIG3-204ENST00000585740 ATXN10Q9UBB4 475 aa10.93□□□□□ -0.66
LIG3-204ENST00000585740 RUVBL1Q9Y265 456 aaKnown RBP10.93□□□□□ -0.66
LIG3-204ENST00000585740 MAN2B2Q9Y2E5 1009 aa10.93□□□□□ -0.66
LIG3-204ENST00000585740 PCDHB3Q9Y5E6 796 aa10.93□□□□□ -0.66
LIG3-204ENST00000585740 ZNF839A8K0R7 811 aa10.92□□□□□ -0.66
LIG3-204ENST00000585740 DENRO43583 198 aaKnown RBP10.92□□□□□ -0.66
LIG3-204ENST00000585740 ZNF8P17098 575 aaPredicted RBP10.92□□□□□ -0.66
LIG3-204ENST00000585740 HOXB6P17509 224 aaKnown RBP10.92□□□□□ -0.66
LIG3-204ENST00000585740 KELP23276 732 aa10.92□□□□□ -0.66
LIG3-204ENST00000585740 S100A3P33764 101 aa10.92□□□□□ -0.66
LIG3-204ENST00000585740 HSD17B2P37059 387 aa10.92□□□□□ -0.66
LIG3-204ENST00000585740 C21orf58P58505 322 aa10.92□□□□□ -0.66
LIG3-204ENST00000585740 ADAM15Q13444 863 aa10.92□□□□□ -0.66
LIG3-204ENST00000585740 DOC2AQ14183 400 aa10.92□□□□□ -0.66
LIG3-204ENST00000585740 PTGR1Q14914 329 aa10.92□□□□□ -0.66
LIG3-204ENST00000585740 NUMA1Q14980 2115 aa10.92□□□□□ -0.66
LIG3-204ENST00000585740 HIST2H2ACQ16777 129 aaPredicted RBP10.92□□□□□ -0.66
LIG3-204ENST00000585740 LRRC36Q1X8D7 754 aa10.92□□□□□ -0.66
LIG3-204ENST00000585740 FAM174BQ3ZCQ3 159 aa10.92□□□□□ -0.66
LIG3-204ENST00000585740 HIST2H2AA3Q6FI13 130 aa10.92□□□□□ -0.66
LIG3-204ENST00000585740 SDE2Q6IQ49 451 aa10.92□□□□□ -0.66
LIG3-204ENST00000585740 SUSD1Q6UWL2 747 aa10.92□□□□□ -0.66
LIG3-204ENST00000585740 FKBP9P1Q75LS8 142 aa10.92□□□□□ -0.66
LIG3-204ENST00000585740 ERMP1Q7Z2K6 904 aa10.92□□□□□ -0.66
LIG3-204ENST00000585740 TRMT11Q7Z4G4 463 aaKnown RBP10.92□□□□□ -0.66
LIG3-204ENST00000585740 LRRTM4Q86VH4 590 aa10.92□□□□□ -0.66
LIG3-204ENST00000585740 KIAA2013Q8IYS2 634 aa10.92□□□□□ -0.66
LIG3-204ENST00000585740 LILRA2Q8N149 483 aa10.92□□□□□ -0.66
LIG3-204ENST00000585740 ZNF513Q8N8E2 541 aaPredicted RBP10.92□□□□□ -0.66
LIG3-204ENST00000585740 ANKFN1Q8N957 763 aa10.92□□□□□ -0.66
LIG3-204ENST00000585740 WDR20Q8TBZ3 569 aa10.92□□□□□ -0.66
LIG3-204ENST00000585740 GTF2H4Q92759 462 aa10.92□□□□□ -0.66
LIG3-204ENST00000585740 GATA6Q92908 595 aa10.92□□□□□ -0.66
LIG3-204ENST00000585740 UBE2E3Q969T4 207 aa10.92□□□□□ -0.66
LIG3-204ENST00000585740 WDR34Q96EX3 536 aa10.92□□□□□ -0.66
LIG3-204ENST00000585740 MED8Q96G25 268 aa10.92□□□□□ -0.66
LIG3-204ENST00000585740 ITCHQ96J02 903 aa10.92□□□□□ -0.66
LIG3-204ENST00000585740 KXD1Q9BQD3 176 aa10.92□□□□□ -0.66
LIG3-204ENST00000585740 EFCAB11Q9BUY7 163 aa10.92□□□□□ -0.66
LIG3-204ENST00000585740 KCNH6Q9H252 994 aa10.92□□□□□ -0.66
LIG3-204ENST00000585740 EHD1Q9H4M9 534 aa10.92□□□□□ -0.66
LIG3-204ENST00000585740 INTS7Q9NVH2 962 aaKnown RBP10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms