RNA–Protein interactions for RNA: ENST00000584760.1

SREBF1-223, Transcript of sterol regulatory element binding transcription factor 1, human

TSL 2

Gene SREBF1, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SREBF1-223	ENST00000584760	CHST8	Q9H2A9	424 aa		12.8	□□□□□ -0.36
SREBF1-223	ENST00000584760	SLC17A6	Q9P2U8	582 aa		12.8	□□□□□ -0.36
SREBF1-223	ENST00000584760	ZC3H7B	Q9UGR2	993 aa	Known RBP	12.8	□□□□□ -0.36
SREBF1-223	ENST00000584760	KLHL20	Q9Y2M5	609 aa		12.8	□□□□□ -0.36
SREBF1-223	ENST00000584760	DHRS7	Q9Y394	339 aa		12.8	□□□□□ -0.36
SREBF1-223	ENST00000584760	PCSK5	Q92824	1860 aa		12.79	□□□□□ -0.36
SREBF1-223	ENST00000584760	EFCAB8	A8MWE9	144 aa		12.79	□□□□□ -0.36
SREBF1-223	ENST00000584760		E7ESA3	106 aa		12.79	□□□□□ -0.36
SREBF1-223	ENST00000584760	EIF3F	O00303	357 aa	Predicted RBP	12.79	□□□□□ -0.36
SREBF1-223	ENST00000584760	ZSCAN9	O15535	394 aa	Predicted RBP	12.79	□□□□□ -0.36
SREBF1-223	ENST00000584760	ZNF749	O43361	778 aa		12.79	□□□□□ -0.36
SREBF1-223	ENST00000584760	KATNA1	O75449	491 aa		12.79	□□□□□ -0.36
SREBF1-223	ENST00000584760	OR2B3	O76000	313 aa		12.79	□□□□□ -0.36
SREBF1-223	ENST00000584760	FKBP9	O95302	570 aa		12.79	□□□□□ -0.36
SREBF1-223	ENST00000584760	RECK	O95980	971 aa		12.79	□□□□□ -0.36
SREBF1-223	ENST00000584760	CAT	P04040	527 aa	Known RBP	12.79	□□□□□ -0.36
SREBF1-223	ENST00000584760	KLK3	P07288	261 aa	Predicted RBP	12.79	□□□□□ -0.36
SREBF1-223	ENST00000584760	CAPN1	P07384	714 aa		12.79	□□□□□ -0.36
SREBF1-223	ENST00000584760	ENO3	P13929	434 aa	Predicted RBP	12.79	□□□□□ -0.36
SREBF1-223	ENST00000584760	PTPN4	P29074	926 aa		12.79	□□□□□ -0.36
SREBF1-223	ENST00000584760	ARL4C	P56559	192 aa		12.79	□□□□□ -0.36
SREBF1-223	ENST00000584760	RPS18	P62269	152 aa	Known RBP	12.79	□□□□□ -0.36
SREBF1-223	ENST00000584760	TIAL1	Q01085	375 aa	Known RBP eCLIP	12.79	□□□□□ -0.36
SREBF1-223	ENST00000584760	CBLB	Q13191	982 aa		12.79	□□□□□ -0.36
SREBF1-223	ENST00000584760	FASTKD3	Q14CZ7	662 aa	Known RBP	12.79	□□□□□ -0.36
SREBF1-223	ENST00000584760	SF1	Q15637	639 aa	Known RBP	12.79	□□□□□ -0.36
SREBF1-223	ENST00000584760	PTCHD3	Q3KNS1	767 aa		12.79	□□□□□ -0.36
SREBF1-223	ENST00000584760	FCRL6	Q6DN72	434 aa		12.79	□□□□□ -0.36
SREBF1-223	ENST00000584760	TRMT10B	Q6PF06	316 aa	Known RBP	12.79	□□□□□ -0.36
SREBF1-223	ENST00000584760	SYT10	Q6XYQ8	523 aa		12.79	□□□□□ -0.36
SREBF1-223	ENST00000584760	KIAA0408	Q6ZU52	694 aa		12.79	□□□□□ -0.36
SREBF1-223	ENST00000584760	ATCAY	Q86WG3	371 aa		12.79	□□□□□ -0.36
SREBF1-223	ENST00000584760	CPNE9	Q8IYJ1	553 aa		12.79	□□□□□ -0.36
SREBF1-223	ENST00000584760	GPR135	Q8IZ08	494 aa		12.79	□□□□□ -0.36
SREBF1-223	ENST00000584760	FBXO15	Q8NCQ5	510 aa	Predicted RBP	12.79	□□□□□ -0.36
SREBF1-223	ENST00000584760	OR2L3	Q8NG85	312 aa		12.79	□□□□□ -0.36
SREBF1-223	ENST00000584760	OR2A1	Q8NGT9	310 aa		12.79	□□□□□ -0.36
SREBF1-223	ENST00000584760	OR9A1P	Q8NGU1	263 aa		12.79	□□□□□ -0.36
SREBF1-223	ENST00000584760	INPP5D	Q92835	1189 aa		12.79	□□□□□ -0.36
SREBF1-223	ENST00000584760	MIB2	Q96AX9	1013 aa		12.79	□□□□□ -0.36
SREBF1-223	ENST00000584760	CLIP3	Q96DZ5	547 aa		12.79	□□□□□ -0.36
SREBF1-223	ENST00000584760	CFAP36	Q96G28	342 aa		12.79	□□□□□ -0.36
SREBF1-223	ENST00000584760	FAM114A2	Q9NRY5	505 aa		12.79	□□□□□ -0.36
SREBF1-223	ENST00000584760	INTS7	Q9NVH2	962 aa	Known RBP	12.79	□□□□□ -0.36
SREBF1-223	ENST00000584760	PLCL2	Q9UPR0	1127 aa		12.79	□□□□□ -0.36
SREBF1-223	ENST00000584760	KLK4	Q9Y5K2	254 aa		12.79	□□□□□ -0.36
SREBF1-223	ENST00000584760	AP1M2	Q9Y6Q5	423 aa		12.79	□□□□□ -0.36
SREBF1-223	ENST00000584760	GFY	I3L273	518 aa		12.78	□□□□□ -0.36
SREBF1-223	ENST00000584760	VPS26A	O75436	327 aa		12.78	□□□□□ -0.36
SREBF1-223	ENST00000584760	RAB40AL	P0C0E4	278 aa		12.78	□□□□□ -0.36
SREBF1-223	ENST00000584760	MPC1L	P0DKB6	136 aa		12.78	□□□□□ -0.36
SREBF1-223	ENST00000584760	CBSL	P0DN79	551 aa		12.78	□□□□□ -0.36
SREBF1-223	ENST00000584760	NR1D1	P20393	614 aa		12.78	□□□□□ -0.36
SREBF1-223	ENST00000584760	CASQ1	P31415	396 aa		12.78	□□□□□ -0.36
SREBF1-223	ENST00000584760	CBS	P35520	551 aa		12.78	□□□□□ -0.36
SREBF1-223	ENST00000584760	GRIA3	P42263	894 aa		12.78	□□□□□ -0.36
SREBF1-223	ENST00000584760	GCGR	P47871	477 aa		12.78	□□□□□ -0.36
SREBF1-223	ENST00000584760	CARS	P49589	748 aa	Known RBP	12.78	□□□□□ -0.36
SREBF1-223	ENST00000584760	MLLT10	P55197	1068 aa		12.78	□□□□□ -0.36
SREBF1-223	ENST00000584760	MRPS25	P82663	173 aa	Known RBP	12.78	□□□□□ -0.36
SREBF1-223	ENST00000584760	C2orf54	Q08AI8	447 aa		12.78	□□□□□ -0.36
SREBF1-223	ENST00000584760	KLRB1	Q12918	225 aa		12.78	□□□□□ -0.36
SREBF1-223	ENST00000584760	IL10RA	Q13651	578 aa		12.78	□□□□□ -0.36
SREBF1-223	ENST00000584760	ERV3-1	Q14264	604 aa		12.78	□□□□□ -0.36
SREBF1-223	ENST00000584760	FASTK	Q14296	549 aa	Known RBP	12.78	□□□□□ -0.36
SREBF1-223	ENST00000584760	FRG1	Q14331	258 aa	Known RBP	12.78	□□□□□ -0.36
SREBF1-223	ENST00000584760	ARHGAP19	Q14CB8	494 aa		12.78	□□□□□ -0.36
SREBF1-223	ENST00000584760	RBM20	Q5T481	1227 aa	Known RBP	12.78	□□□□□ -0.36
SREBF1-223	ENST00000584760	TEDDM1	Q5T9Z0	273 aa		12.78	□□□□□ -0.36
SREBF1-223	ENST00000584760	RHBDD2	Q6NTF9	364 aa		12.78	□□□□□ -0.36
SREBF1-223	ENST00000584760	FIGLA	Q6QHK4	219 aa		12.78	□□□□□ -0.36
SREBF1-223	ENST00000584760	CYHR1	Q6ZMK1	362 aa		12.78	□□□□□ -0.36
SREBF1-223	ENST00000584760	PIWIL4	Q7Z3Z4	852 aa	Known RBP	12.78	□□□□□ -0.36
SREBF1-223	ENST00000584760	SYVN1	Q86TM6	617 aa		12.78	□□□□□ -0.36
SREBF1-223	ENST00000584760	GABPB2	Q8TAK5	448 aa	Predicted RBP	12.78	□□□□□ -0.36
SREBF1-223	ENST00000584760	ASB11	Q8WXH4	323 aa		12.78	□□□□□ -0.36
SREBF1-223	ENST00000584760	N4BP2L2	Q92802	583 aa	Predicted RBP	12.78	□□□□□ -0.36
SREBF1-223	ENST00000584760	DPH2	Q9BQC3	489 aa	Predicted RBP	12.78	□□□□□ -0.36
SREBF1-223	ENST00000584760	SPRTN	Q9H040	489 aa	Predicted RBP	12.78	□□□□□ -0.36
SREBF1-223	ENST00000584760	ENAM	Q9NRM1	1142 aa		12.78	□□□□□ -0.36
SREBF1-223	ENST00000584760	EURL	Q9NYK6	297 aa		12.78	□□□□□ -0.36
SREBF1-223	ENST00000584760	CAMSAP3	Q9P1Y5	1249 aa	Predicted RBP	12.78	□□□□□ -0.36
SREBF1-223	ENST00000584760	TP53TG5	Q9Y2B4	290 aa		12.78	□□□□□ -0.36
SREBF1-223	ENST00000584760	SNX24	Q9Y343	169 aa		12.78	□□□□□ -0.36
SREBF1-223	ENST00000584760	KCNMB2	Q9Y691	235 aa		12.78	□□□□□ -0.36
SREBF1-223	ENST00000584760	USP9Y	O00507	2555 aa	Predicted RBP	12.77	□□□□□ -0.36
SREBF1-223	ENST00000584760	MED13	Q9UHV7	2174 aa		12.77	□□□□□ -0.36
SREBF1-223	ENST00000584760	FAM187A	A6NFU0	413 aa		12.77	□□□□□ -0.37
SREBF1-223	ENST00000584760		K7EM74	188 aa		12.77	□□□□□ -0.37
SREBF1-223	ENST00000584760	RAD51C	O43502	376 aa		12.77	□□□□□ -0.37
SREBF1-223	ENST00000584760	NRP2	O60462	931 aa		12.77	□□□□□ -0.37
SREBF1-223	ENST00000584760	SLC16A8	O95907	504 aa		12.77	□□□□□ -0.37
SREBF1-223	ENST00000584760	AHSG	P02765	367 aa		12.77	□□□□□ -0.37
SREBF1-223	ENST00000584760	HBQ1	P09105	142 aa		12.77	□□□□□ -0.37
SREBF1-223	ENST00000584760	MCM3	P25205	808 aa		12.77	□□□□□ -0.37
SREBF1-223	ENST00000584760	SKIV2L2	P42285	1042 aa	Known RBP	12.77	□□□□□ -0.37
SREBF1-223	ENST00000584760	CDKN2D	P55273	166 aa		12.77	□□□□□ -0.37
SREBF1-223	ENST00000584760	RPS15	P62841	145 aa	Known RBP	12.77	□□□□□ -0.37
SREBF1-223	ENST00000584760	YBX1	P67809	324 aa	Known RBP	12.77	□□□□□ -0.37
SREBF1-223	ENST00000584760	NCF4	Q15080	339 aa		12.77	□□□□□ -0.37

Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms