RNA–Protein interactions for RNA: ENST00000574867.5

NUP88-210, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 2,081 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-210ENST00000574867 FLVCR1-AS1Q8TAF5 88 aa16.5■□□□□ 0.23
NUP88-210ENST00000574867 TMEM74Q96NL1 305 aa16.5■□□□□ 0.23
NUP88-210ENST00000574867 PITPNM3Q9BZ71 974 aa16.5■□□□□ 0.23
NUP88-210ENST00000574867 PLLPQ9Y342 182 aa16.5■□□□□ 0.23
NUP88-210ENST00000574867 CNOT1A5YKK6 2376 aaKnown RBP16.5■□□□□ 0.23
NUP88-210ENST00000574867 CFAP54Q96N23 3096 aa16.49■□□□□ 0.23
NUP88-210ENST00000574867 ATP8B1O43520 1251 aa16.49■□□□□ 0.23
NUP88-210ENST00000574867 SPAG7O75391 227 aa16.49■□□□□ 0.23
NUP88-210ENST00000574867 SBK3P0C264 359 aa16.49■□□□□ 0.23
NUP88-210ENST00000574867 ANKRD34CP0C6C1 535 aa16.49■□□□□ 0.23
NUP88-210ENST00000574867 SLC6A12P48065 614 aa16.49■□□□□ 0.23
NUP88-210ENST00000574867 NFKB2Q00653 900 aa16.49■□□□□ 0.23
NUP88-210ENST00000574867 TRA2AQ13595 282 aaKnown RBP eCLIP16.49■□□□□ 0.23
NUP88-210ENST00000574867 NAA25Q14CX7 972 aa16.49■□□□□ 0.23
NUP88-210ENST00000574867 SETDB1Q15047 1291 aa16.49■□□□□ 0.23
NUP88-210ENST00000574867 PFKFB4Q16877 469 aa16.49■□□□□ 0.23
NUP88-210ENST00000574867 THEMIS2Q5TEJ8 643 aa16.49■□□□□ 0.23
NUP88-210ENST00000574867 LMNTD1Q8N9Z9 388 aa16.49■□□□□ 0.23
NUP88-210ENST00000574867 ADAMTS14Q8WXS8 1223 aa16.49■□□□□ 0.23
NUP88-210ENST00000574867 ATP6V1G3Q96LB4 118 aa16.49■□□□□ 0.23
NUP88-210ENST00000574867 DEPDC7Q96QD5 511 aa16.49■□□□□ 0.23
NUP88-210ENST00000574867 MIPEPQ99797 713 aa16.49■□□□□ 0.23
NUP88-210ENST00000574867 TMEM79Q9BSE2 394 aa16.49■□□□□ 0.23
NUP88-210ENST00000574867 C1GALT1Q9NS00 363 aa16.49■□□□□ 0.23
NUP88-210ENST00000574867 TMEM9Q9P0T7 183 aa16.49■□□□□ 0.23
NUP88-210ENST00000574867 IGHV5-10-1A0A0J9YXX1 117 aa16.49■□□□□ 0.23
NUP88-210ENST00000574867 A0A0J9YY10 115 aa16.49■□□□□ 0.23
NUP88-210ENST00000574867 TMX2-CTNND1H3BSU7 103 aa16.49■□□□□ 0.23
NUP88-210ENST00000574867 STX16-NPEPL1H3BU86 382 aa16.49■□□□□ 0.23
NUP88-210ENST00000574867 STX16O14662 325 aa16.49■□□□□ 0.23
NUP88-210ENST00000574867 HOXB3P14651 431 aaPredicted RBP16.49■□□□□ 0.23
NUP88-210ENST00000574867 CREB1P16220 341 aa16.49■□□□□ 0.23
NUP88-210ENST00000574867 KCNA4P22459 653 aa16.49■□□□□ 0.23
NUP88-210ENST00000574867 CCKBRP32239 447 aa16.49■□□□□ 0.23
NUP88-210ENST00000574867 PDX1P52945 283 aa16.49■□□□□ 0.23
NUP88-210ENST00000574867 SF1Q15637 639 aaKnown RBP16.49■□□□□ 0.23
NUP88-210ENST00000574867 ZXDCQ2QGD7 858 aaPredicted RBP16.49■□□□□ 0.23
NUP88-210ENST00000574867 HES3Q5TGS1 186 aa16.49■□□□□ 0.23
NUP88-210ENST00000574867 METTL2BQ6P1Q9 378 aaKnown RBP16.49■□□□□ 0.23
NUP88-210ENST00000574867 LCTLQ6UWM7 567 aa16.49■□□□□ 0.23
NUP88-210ENST00000574867 FAM92BQ6ZTR7 304 aa16.49■□□□□ 0.23
NUP88-210ENST00000574867 TMPRSS9Q7Z410 1059 aa16.49■□□□□ 0.23
NUP88-210ENST00000574867 CACTIN-AS1Q8N1I8 211 aa16.49■□□□□ 0.23
NUP88-210ENST00000574867 OR2A1Q8NGT9 310 aa16.49■□□□□ 0.23
NUP88-210ENST00000574867 HAUS8Q9BT25 410 aa16.49■□□□□ 0.23
NUP88-210ENST00000574867 TAC3Q9UHF0 121 aa16.49■□□□□ 0.23
NUP88-210ENST00000574867 TNPO3Q9Y5L0 923 aaKnown RBP16.49■□□□□ 0.23
NUP88-210ENST00000574867 TAPBPO15533 448 aa16.48■□□□□ 0.23
NUP88-210ENST00000574867 PRPF4O43172 522 aaKnown RBP eCLIP16.48■□□□□ 0.23
NUP88-210ENST00000574867 STK16O75716 305 aa16.48■□□□□ 0.23
NUP88-210ENST00000574867 RASSF9O75901 435 aa16.48■□□□□ 0.23
NUP88-210ENST00000574867 MT-CO3P00414 261 aa16.48■□□□□ 0.23
NUP88-210ENST00000574867 CDH3P22223 829 aa16.48■□□□□ 0.23
NUP88-210ENST00000574867 PSMB5P28074 263 aa16.48■□□□□ 0.23
NUP88-210ENST00000574867 CMPK1P30085 196 aa16.48■□□□□ 0.23
NUP88-210ENST00000574867 INHBCP55103 352 aa16.48■□□□□ 0.23
NUP88-210ENST00000574867 MAGOHP61326 146 aaKnown RBP16.48■□□□□ 0.23
NUP88-210ENST00000574867 ABATP80404 500 aa16.48■□□□□ 0.23
NUP88-210ENST00000574867 ZFP36L1Q07352 338 aaKnown RBP16.48■□□□□ 0.23
NUP88-210ENST00000574867 ICE2Q659A1 982 aa16.48■□□□□ 0.23
NUP88-210ENST00000574867 ZNF574Q6ZN55 896 aaPredicted RBP16.48■□□□□ 0.23
NUP88-210ENST00000574867 LRRC70Q7Z2Q7 622 aa16.48■□□□□ 0.23
NUP88-210ENST00000574867 SLC22A9Q8IVM8 553 aa16.48■□□□□ 0.23
NUP88-210ENST00000574867 OR2L3Q8NG85 312 aa16.48■□□□□ 0.23
NUP88-210ENST00000574867 TCP10LQ8TDR4 215 aa16.48■□□□□ 0.23
NUP88-210ENST00000574867 PYCR2Q96C36 320 aa16.48■□□□□ 0.23
NUP88-210ENST00000574867 GRAMD1AQ96CP6 724 aa16.48■□□□□ 0.23
NUP88-210ENST00000574867 CCDC126Q96EE4 140 aa16.48■□□□□ 0.23
NUP88-210ENST00000574867 CCDC74BQ96LY2 380 aa16.48■□□□□ 0.23
NUP88-210ENST00000574867 CD244Q9BZW8 370 aa16.48■□□□□ 0.23
NUP88-210ENST00000574867 INTS7Q9NVH2 962 aaKnown RBP16.48■□□□□ 0.23
NUP88-210ENST00000574867 SEMA5BQ9P283 1151 aa16.48■□□□□ 0.23
NUP88-210ENST00000574867 KLHL3Q9UH77 587 aa16.48■□□□□ 0.23
NUP88-210ENST00000574867 CLCA2Q9UQC9 943 aa16.48■□□□□ 0.23
NUP88-210ENST00000574867 A8MT66 165 aa16.47■□□□□ 0.23
NUP88-210ENST00000574867 TM9SF1O15321 606 aa16.47■□□□□ 0.23
NUP88-210ENST00000574867 WDR47O94967 919 aa16.47■□□□□ 0.23
NUP88-210ENST00000574867 MYL2P10916 166 aa16.47■□□□□ 0.23
NUP88-210ENST00000574867 ATP5F1P24539 256 aaPredicted RBP16.47■□□□□ 0.23
NUP88-210ENST00000574867 ID4P47928 161 aa16.47■□□□□ 0.23
NUP88-210ENST00000574867 HSPA7P48741 367 aa16.47■□□□□ 0.23
NUP88-210ENST00000574867 CACHD1Q5VU97 1274 aa16.47■□□□□ 0.23
NUP88-210ENST00000574867 ZYG11AQ6WRX3 759 aa16.47■□□□□ 0.23
NUP88-210ENST00000574867 RAB44Q7Z6P3 723 aaPredicted RBP16.47■□□□□ 0.23
NUP88-210ENST00000574867 TMPRSS12Q86WS5 348 aa16.47■□□□□ 0.23
NUP88-210ENST00000574867 KMT5CQ86Y97 462 aa16.47■□□□□ 0.23
NUP88-210ENST00000574867 PTGR2Q8N8N7 351 aaPredicted RBP16.47■□□□□ 0.23
NUP88-210ENST00000574867 CCDC63Q8NA47 563 aa16.47■□□□□ 0.23
NUP88-210ENST00000574867 ARL8AQ96BM9 186 aa16.47■□□□□ 0.23
NUP88-210ENST00000574867 MAP3K3Q99759 626 aa16.47■□□□□ 0.23
NUP88-210ENST00000574867 SEMA6CQ9H3T2 930 aa16.47■□□□□ 0.23
NUP88-210ENST00000574867 HMGB1P1B2RPK0 211 aaPredicted RBP16.47■□□□□ 0.23
NUP88-210ENST00000574867 PRDX1Q06830 199 aaKnown RBP16.47■□□□□ 0.23
NUP88-210ENST00000574867 PCBP2Q15366 365 aaKnown RBP eCLIP16.47■□□□□ 0.23
NUP88-210ENST00000574867 SNAP47Q5SQN1 464 aa16.47■□□□□ 0.23
NUP88-210ENST00000574867 PHF19Q5T6S3 580 aa16.47■□□□□ 0.23
NUP88-210ENST00000574867 THOC6Q86W42 341 aaKnown RBP16.47■□□□□ 0.23
NUP88-210ENST00000574867 GALNT15Q8N3T1 639 aa16.47■□□□□ 0.23
NUP88-210ENST00000574867 DCBLD1Q8N8Z6 715 aa16.47■□□□□ 0.23
NUP88-210ENST00000574867 FAM111AQ96PZ2 611 aa16.47■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms