RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 XKR8Q9H6D3 395 aa13.24□□□□□ -0.29
CCDC40-209ENST00000573474 WDR55Q9H6Y2 383 aaPredicted RBP13.24□□□□□ -0.29
CCDC40-209ENST00000573474 SLC40A1Q9NP59 571 aa13.24□□□□□ -0.29
CCDC40-209ENST00000573474 TCF7L2Q9NQB0 619 aa13.24□□□□□ -0.29
CCDC40-209ENST00000573474 TMEM74BQ9NUR3 256 aa13.24□□□□□ -0.29
CCDC40-209ENST00000573474 POT1Q9NUX5 634 aa13.24□□□□□ -0.29
CCDC40-209ENST00000573474 CPNE7Q9UBL6 633 aa13.24□□□□□ -0.29
CCDC40-209ENST00000573474 DOLKQ9UPQ8 538 aa13.24□□□□□ -0.29
CCDC40-209ENST00000573474 ICKQ9UPZ9 632 aa13.24□□□□□ -0.29
CCDC40-209ENST00000573474 PCDHGA2Q9Y5H1 932 aa13.24□□□□□ -0.29
CCDC40-209ENST00000573474 ZDBF2Q9HCK1 2354 aa13.23□□□□□ -0.29
CCDC40-209ENST00000573474 KCNE1BA0A087WTH5 132 aa13.23□□□□□ -0.29
CCDC40-209ENST00000573474 GOLGA8QA0A0J9YX86 632 aa13.23□□□□□ -0.29
CCDC40-209ENST00000573474 GOLGA8OA6NCC3 632 aa13.23□□□□□ -0.29
CCDC40-209ENST00000573474 E7EQ34 232 aa13.23□□□□□ -0.29
CCDC40-209ENST00000573474 LMO7DNF2Z398 122 aa13.23□□□□□ -0.29
CCDC40-209ENST00000573474 GOLGA8NF8WBI6 632 aa13.23□□□□□ -0.29
CCDC40-209ENST00000573474 MANBAO00462 879 aa13.23□□□□□ -0.29
CCDC40-209ENST00000573474 PIP5K1BO14986 540 aa13.23□□□□□ -0.29
CCDC40-209ENST00000573474 YY2O15391 372 aa13.23□□□□□ -0.29
CCDC40-209ENST00000573474 PRAMEF4O60810 478 aa13.23□□□□□ -0.29
CCDC40-209ENST00000573474 CCDC22O60826 627 aa13.23□□□□□ -0.29
CCDC40-209ENST00000573474 VPS4BO75351 444 aa13.23□□□□□ -0.29
CCDC40-209ENST00000573474 PIAS2O75928 621 aa13.23□□□□□ -0.29
CCDC40-209ENST00000573474 WFS1O76024 890 aa13.23□□□□□ -0.29
CCDC40-209ENST00000573474 KRT6AP02538 564 aa13.23□□□□□ -0.29
CCDC40-209ENST00000573474 KRT6BP04259 564 aa13.23□□□□□ -0.29
CCDC40-209ENST00000573474 JUPP14923 745 aa13.23□□□□□ -0.29
CCDC40-209ENST00000573474 EPHA3P29320 983 aa13.23□□□□□ -0.29
CCDC40-209ENST00000573474 HOXD12P35452 270 aa13.23□□□□□ -0.29
CCDC40-209ENST00000573474 HNF4AP41235 474 aa13.23□□□□□ -0.29
CCDC40-209ENST00000573474 KRT6CP48668 564 aa13.23□□□□□ -0.29
CCDC40-209ENST00000573474 UBE2IP63279 158 aaKnown RBP13.23□□□□□ -0.29
CCDC40-209ENST00000573474 IFT88Q13099 833 aa13.23□□□□□ -0.29
CCDC40-209ENST00000573474 DOC2AQ14183 400 aa13.23□□□□□ -0.29
CCDC40-209ENST00000573474 SIM2Q14190 667 aaPredicted RBP13.23□□□□□ -0.29
CCDC40-209ENST00000573474 TBCCQ15814 346 aa13.23□□□□□ -0.29
CCDC40-209ENST00000573474 LSM12Q3MHD2 195 aaKnown RBP13.23□□□□□ -0.29
CCDC40-209ENST00000573474 PRAMEF9Q5VWM5 478 aa13.23□□□□□ -0.29
CCDC40-209ENST00000573474 PEAR1Q5VY43 1037 aaPredicted RBP13.23□□□□□ -0.29
CCDC40-209ENST00000573474 METTL21CQ5VZV1 264 aa13.23□□□□□ -0.29
CCDC40-209ENST00000573474 NXNQ6DKJ4 435 aa13.23□□□□□ -0.29
CCDC40-209ENST00000573474 SLCO4C1Q6ZQN7 724 aa13.23□□□□□ -0.29
CCDC40-209ENST00000573474 RNF165Q6ZSG1 346 aa13.23□□□□□ -0.29
CCDC40-209ENST00000573474 TRPM8Q7Z2W7 1104 aa13.23□□□□□ -0.29
CCDC40-209ENST00000573474 RABEPKQ7Z6M1 372 aa13.23□□□□□ -0.29
CCDC40-209ENST00000573474 MTDHQ86UE4 582 aaKnown RBP13.23□□□□□ -0.29
CCDC40-209ENST00000573474 ALYREFQ86V81 257 aaKnown RBP13.23□□□□□ -0.29
CCDC40-209ENST00000573474 MYLK4Q86YV6 388 aaPredicted RBP13.23□□□□□ -0.29
CCDC40-209ENST00000573474 DDIASQ8IXT1 998 aa13.23□□□□□ -0.29
CCDC40-209ENST00000573474 RBM12BQ8IXT5 1001 aaKnown RBP13.23□□□□□ -0.29
CCDC40-209ENST00000573474 NAGSQ8N159 534 aa13.23□□□□□ -0.29
CCDC40-209ENST00000573474 SFRP1Q8N474 314 aa13.23□□□□□ -0.29
CCDC40-209ENST00000573474 LINC01555Q8NAE3 123 aa13.23□□□□□ -0.29
CCDC40-209ENST00000573474 AVL9Q8NBF6 648 aa13.23□□□□□ -0.29
CCDC40-209ENST00000573474 ZNF548Q8NEK5 533 aaPredicted RBP13.23□□□□□ -0.29
CCDC40-209ENST00000573474 CEP70Q8NHQ1 597 aa13.23□□□□□ -0.29
CCDC40-209ENST00000573474 SLC5A11Q8WWX8 675 aa13.23□□□□□ -0.29
CCDC40-209ENST00000573474 PIGKQ92643 395 aa13.23□□□□□ -0.29
CCDC40-209ENST00000573474 NEIL2Q969S2 332 aa13.23□□□□□ -0.29
CCDC40-209ENST00000573474 PPP1R36Q96LQ0 422 aa13.23□□□□□ -0.29
CCDC40-209ENST00000573474 LRRC37BQ96QE4 947 aa13.23□□□□□ -0.29
CCDC40-209ENST00000573474 OR52B2Q96RD2 323 aa13.23□□□□□ -0.29
CCDC40-209ENST00000573474 NRTNQ99748 197 aa13.23□□□□□ -0.29
CCDC40-209ENST00000573474 TUBB1Q9H4B7 451 aa13.23□□□□□ -0.29
CCDC40-209ENST00000573474 EHD1Q9H4M9 534 aa13.23□□□□□ -0.29
CCDC40-209ENST00000573474 OR6C2Q9NZP2 312 aa13.23□□□□□ -0.29
CCDC40-209ENST00000573474 SNX6Q9UNH7 406 aa13.23□□□□□ -0.29
CCDC40-209ENST00000573474 SNX11Q9Y5W9 270 aa13.23□□□□□ -0.29
CCDC40-209ENST00000573474 GON4LQ3T8J9 2241 aa13.23□□□□□ -0.29
CCDC40-209ENST00000573474 A0A1W2PPV9 198 aa13.22□□□□□ -0.29
CCDC40-209ENST00000573474 B4DGG1 531 aa13.22□□□□□ -0.29
CCDC40-209ENST00000573474 ULK1O75385 1050 aa13.22□□□□□ -0.29
CCDC40-209ENST00000573474 ANXA6P08133 673 aa13.22□□□□□ -0.29
CCDC40-209ENST00000573474 SERPINA6P08185 405 aa13.22□□□□□ -0.29
CCDC40-209ENST00000573474 LINC00032P0C843 101 aa13.22□□□□□ -0.29
CCDC40-209ENST00000573474 C1GALT1C1LP0DN25 315 aa13.22□□□□□ -0.29
CCDC40-209ENST00000573474 RXRGP48443 463 aa13.22□□□□□ -0.29
CCDC40-209ENST00000573474 BNC1Q01954 994 aa13.22□□□□□ -0.29
CCDC40-209ENST00000573474 LAPTM5Q13571 262 aa13.22□□□□□ -0.29
CCDC40-209ENST00000573474 E2F2Q14209 437 aa13.22□□□□□ -0.29
CCDC40-209ENST00000573474 CPSF6Q16630 551 aaKnown RBP eCLIP13.22□□□□□ -0.29
CCDC40-209ENST00000573474 FAM219BQ5XKK7 198 aa13.22□□□□□ -0.29
CCDC40-209ENST00000573474 ATG9BQ674R7 924 aa13.22□□□□□ -0.29
CCDC40-209ENST00000573474 GRHL2Q6ISB3 625 aa13.22□□□□□ -0.29
CCDC40-209ENST00000573474 IL27RAQ6UWB1 636 aa13.22□□□□□ -0.29
CCDC40-209ENST00000573474 NXPE4Q6UWF7 544 aa13.22□□□□□ -0.29
CCDC40-209ENST00000573474 ZNF771Q7L3S4 317 aaPredicted RBP13.22□□□□□ -0.29
CCDC40-209ENST00000573474 AMIGO1Q86WK6 493 aa13.22□□□□□ -0.29
CCDC40-209ENST00000573474 C17orf64Q86WR6 236 aa13.22□□□□□ -0.29
CCDC40-209ENST00000573474 OR4E2Q8NGC2 313 aa13.22□□□□□ -0.29
CCDC40-209ENST00000573474 CEP76Q8TAP6 659 aa13.22□□□□□ -0.29
CCDC40-209ENST00000573474 SLC37A2Q8TED4 501 aa13.22□□□□□ -0.29
CCDC40-209ENST00000573474 PATE1Q8WXA2 126 aa13.22□□□□□ -0.29
CCDC40-209ENST00000573474 WDR34Q96EX3 536 aa13.22□□□□□ -0.29
CCDC40-209ENST00000573474 PTCD3Q96EY7 689 aaKnown RBP13.22□□□□□ -0.29
CCDC40-209ENST00000573474 C3orf30Q96M34 536 aa13.22□□□□□ -0.29
CCDC40-209ENST00000573474 EFCAB11Q9BUY7 163 aa13.22□□□□□ -0.29
CCDC40-209ENST00000573474 SRMSQ9H3Y6 488 aa13.22□□□□□ -0.29
CCDC40-209ENST00000573474 RIC8BQ9NVN3 520 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms