RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 ADGRF3Q8IZF5 1079 aa19.9■□□□□ 0.78
VPS53-210ENST00000571456 TSNARE1Q96NA8 513 aa19.9■□□□□ 0.78
VPS53-210ENST00000571456 CMKLR1Q99788 373 aa19.9■□□□□ 0.78
VPS53-210ENST00000571456 TMEM109Q9BVC6 243 aa19.9■□□□□ 0.78
VPS53-210ENST00000571456 C1GALT1Q9NS00 363 aa19.9■□□□□ 0.78
VPS53-210ENST00000571456 ANKMY1Q9P2S6 941 aa19.9■□□□□ 0.78
VPS53-210ENST00000571456 ATXN7L1Q9ULK2 861 aaPredicted RBP19.9■□□□□ 0.78
VPS53-210ENST00000571456 RUVBL2Q9Y230 463 aaKnown RBP19.9■□□□□ 0.78
VPS53-210ENST00000571456 CCDC187A0A096LP49 1063 aa19.89■□□□□ 0.77
VPS53-210ENST00000571456 IGHV5-10-1A0A0J9YXX1 117 aa19.89■□□□□ 0.77
VPS53-210ENST00000571456 NBASA2RRP1 2371 aa19.89■□□□□ 0.77
VPS53-210ENST00000571456 K7ENP7 123 aa19.89■□□□□ 0.77
VPS53-210ENST00000571456 BTN3A1O00481 513 aa19.89■□□□□ 0.77
VPS53-210ENST00000571456 CHRM5P08912 532 aaPredicted RBP19.89■□□□□ 0.77
VPS53-210ENST00000571456 TPBGLP0DKB5 382 aa19.89■□□□□ 0.77
VPS53-210ENST00000571456 CD1DP15813 335 aa19.89■□□□□ 0.77
VPS53-210ENST00000571456 LSSP48449 732 aa19.89■□□□□ 0.77
VPS53-210ENST00000571456 HNMTP50135 292 aa19.89■□□□□ 0.77
VPS53-210ENST00000571456 IRGCQ6NXR0 463 aa19.89■□□□□ 0.77
VPS53-210ENST00000571456 INO80CQ6PI98 192 aaPredicted RBP19.89■□□□□ 0.77
VPS53-210ENST00000571456 SBSNQ6UWP8 590 aa19.89■□□□□ 0.77
VPS53-210ENST00000571456 FRA10AC1Q70Z53 315 aa19.89■□□□□ 0.77
VPS53-210ENST00000571456 ARHGAP22Q7Z5H3 698 aa19.89■□□□□ 0.77
VPS53-210ENST00000571456 TCAIMQ8N3R3 496 aa19.89■□□□□ 0.77
VPS53-210ENST00000571456 MYRIPQ8NFW9 859 aa19.89■□□□□ 0.77
VPS53-210ENST00000571456 RHEBL1Q8TAI7 183 aa19.89■□□□□ 0.77
VPS53-210ENST00000571456 STAG3L4Q8TBR4 150 aa19.89■□□□□ 0.77
VPS53-210ENST00000571456 ANKRD49Q8WVL7 239 aa19.89■□□□□ 0.77
VPS53-210ENST00000571456 SMPDL3AQ92484 453 aa19.89■□□□□ 0.77
VPS53-210ENST00000571456 KIAA1191Q96A73 305 aa19.89■□□□□ 0.77
VPS53-210ENST00000571456 PCBD2Q9H0N5 130 aa19.89■□□□□ 0.77
VPS53-210ENST00000571456 TSR3Q9UJK0 312 aaKnown RBP19.89■□□□□ 0.77
VPS53-210ENST00000571456 PDE10AQ9Y233 779 aa19.89■□□□□ 0.77
VPS53-210ENST00000571456 OARD1Q9Y530 152 aa19.89■□□□□ 0.77
VPS53-210ENST00000571456 GSAPA4D1B5 854 aa19.88■□□□□ 0.77
VPS53-210ENST00000571456 BTN3A3O00478 584 aa19.88■□□□□ 0.77
VPS53-210ENST00000571456 KLHL2O95198 593 aa19.88■□□□□ 0.77
VPS53-210ENST00000571456 POLR2CP19387 275 aaPredicted RBP19.88■□□□□ 0.77
VPS53-210ENST00000571456 PDX1P52945 283 aa19.88■□□□□ 0.77
VPS53-210ENST00000571456 PNLIPRP1P54315 467 aa19.88■□□□□ 0.77
VPS53-210ENST00000571456 CSHL1Q14406 222 aa19.88■□□□□ 0.77
VPS53-210ENST00000571456 NAA30Q147X3 362 aaPredicted RBP19.88■□□□□ 0.77
VPS53-210ENST00000571456 ACAP2Q15057 778 aa19.88■□□□□ 0.77
VPS53-210ENST00000571456 SLC5A12Q1EHB4 618 aa19.88■□□□□ 0.77
VPS53-210ENST00000571456 PHF19Q5T6S3 580 aa19.88■□□□□ 0.77
VPS53-210ENST00000571456 FBXO38Q6PIJ6 1188 aa19.88■□□□□ 0.77
VPS53-210ENST00000571456 ATG14Q6ZNE5 492 aa19.88■□□□□ 0.77
VPS53-210ENST00000571456 AGBL5Q8NDL9 886 aa19.88■□□□□ 0.77
VPS53-210ENST00000571456 WDR36Q8NI36 951 aaKnown RBP19.88■□□□□ 0.77
VPS53-210ENST00000571456 PKNOX2Q96KN3 472 aa19.88■□□□□ 0.77
VPS53-210ENST00000571456 CCDC74BQ96LY2 380 aa19.88■□□□□ 0.77
VPS53-210ENST00000571456 TGM7Q96PF1 710 aa19.88■□□□□ 0.77
VPS53-210ENST00000571456 PKP4Q99569 1192 aa19.88■□□□□ 0.77
VPS53-210ENST00000571456 PITPNM3Q9BZ71 974 aa19.88■□□□□ 0.77
VPS53-210ENST00000571456 CHRNA10Q9GZZ6 450 aa19.88■□□□□ 0.77
VPS53-210ENST00000571456 ZNF768Q9H5H4 540 aaKnown RBP19.88■□□□□ 0.77
VPS53-210ENST00000571456 POLR1BQ9H9Y6 1135 aa19.88■□□□□ 0.77
VPS53-210ENST00000571456 THSD1Q9NS62 852 aa19.88■□□□□ 0.77
VPS53-210ENST00000571456 INTS7Q9NVH2 962 aaKnown RBP19.88■□□□□ 0.77
VPS53-210ENST00000571456 ARGLU1Q9NWB6 273 aaPredicted RBP19.88■□□□□ 0.77
VPS53-210ENST00000571456 ARL15Q9NXU5 204 aa19.88■□□□□ 0.77
VPS53-210ENST00000571456 ACTR10Q9NZ32 417 aa19.88■□□□□ 0.77
VPS53-210ENST00000571456 ADAMTS6Q9UKP5 1117 aa19.88■□□□□ 0.77
VPS53-210ENST00000571456 SYCE1LA8MT33 242 aa19.87■□□□□ 0.77
VPS53-210ENST00000571456 CCNDBP1O95273 360 aa19.87■□□□□ 0.77
VPS53-210ENST00000571456 SLC16A8O95907 504 aa19.87■□□□□ 0.77
VPS53-210ENST00000571456 SYF2O95926 243 aaKnown RBP19.87■□□□□ 0.77
VPS53-210ENST00000571456 SHBGP04278 402 aa19.87■□□□□ 0.77
VPS53-210ENST00000571456 ANXA5P08758 320 aa19.87■□□□□ 0.77
VPS53-210ENST00000571456 OAS2P29728 719 aaKnown RBP19.87■□□□□ 0.77
VPS53-210ENST00000571456 PRDX3P30048 256 aaKnown RBP19.87■□□□□ 0.77
VPS53-210ENST00000571456 CSTF2P33240 577 aaKnown RBP eCLIP19.87■□□□□ 0.77
VPS53-210ENST00000571456 PPP1R3AQ16821 1122 aa19.87■□□□□ 0.77
VPS53-210ENST00000571456 CACHD1Q5VU97 1274 aa19.87■□□□□ 0.77
VPS53-210ENST00000571456 SPESP1Q6UW49 350 aa19.87■□□□□ 0.77
VPS53-210ENST00000571456 SYTL1Q8IYJ3 562 aa19.87■□□□□ 0.77
VPS53-210ENST00000571456 DENND1AQ8TEH3 1009 aa19.87■□□□□ 0.77
VPS53-210ENST00000571456 KLHL6Q8WZ60 621 aa19.87■□□□□ 0.77
VPS53-210ENST00000571456 DLG3Q92796 817 aa19.87■□□□□ 0.77
VPS53-210ENST00000571456 FBXL8Q96CD0 374 aa19.87■□□□□ 0.77
VPS53-210ENST00000571456 B3GNT4Q9C0J1 378 aa19.87■□□□□ 0.77
VPS53-210ENST00000571456 XKR8Q9H6D3 395 aa19.87■□□□□ 0.77
VPS53-210ENST00000571456 ASCL3Q9NQ33 180 aa19.87■□□□□ 0.77
VPS53-210ENST00000571456 EURLQ9NYK6 297 aa19.87■□□□□ 0.77
VPS53-210ENST00000571456 SPTBN1Q01082 2364 aaKnown RBP19.86■□□□□ 0.77
VPS53-210ENST00000571456 BSNQ9UPA5 3926 aa19.86■□□□□ 0.77
VPS53-210ENST00000571456 NBPF19A0A087WUL8 3843 aa19.86■□□□□ 0.77
VPS53-210ENST00000571456 ISM1B1AKI9 464 aa19.86■□□□□ 0.77
VPS53-210ENST00000571456 RASSF9O75901 435 aa19.86■□□□□ 0.77
VPS53-210ENST00000571456 ZBTB11O95625 1053 aaPredicted RBP19.86■□□□□ 0.77
VPS53-210ENST00000571456 RBP1P09455 135 aa19.86■□□□□ 0.77
VPS53-210ENST00000571456 GP1BBP13224 206 aa19.86■□□□□ 0.77
VPS53-210ENST00000571456 CDH3P22223 829 aa19.86■□□□□ 0.77
VPS53-210ENST00000571456 GFERP55789 205 aa19.86■□□□□ 0.77
VPS53-210ENST00000571456 PHKG1Q16816 387 aa19.86■□□□□ 0.77
VPS53-210ENST00000571456 CCSMST1Q4G0I0 132 aa19.86■□□□□ 0.77
VPS53-210ENST00000571456 IGF2-ASQ6U949 168 aa19.86■□□□□ 0.77
VPS53-210ENST00000571456 TMPRSS9Q7Z410 1059 aa19.86■□□□□ 0.77
VPS53-210ENST00000571456 LINC01555Q8NAE3 123 aa19.86■□□□□ 0.77
VPS53-210ENST00000571456 ZNF480Q8WV37 535 aa19.86■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms