RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 EMP2P54851 167 aa10.57□□□□□ -0.72
VPS53-207ENST00000570510 RPA4Q13156 261 aa10.57□□□□□ -0.72
VPS53-207ENST00000570510 BOP1Q14137 746 aaKnown RBP10.57□□□□□ -0.72
VPS53-207ENST00000570510 KIR2DS3Q14952 304 aa10.57□□□□□ -0.72
VPS53-207ENST00000570510 NOMO1Q15155 1222 aa10.57□□□□□ -0.72
VPS53-207ENST00000570510 ATP13A4Q4VNC1 1196 aa10.57□□□□□ -0.72
VPS53-207ENST00000570510 SIRPB2Q5JXA9 342 aa10.57□□□□□ -0.72
VPS53-207ENST00000570510 ATG9BQ674R7 924 aa10.57□□□□□ -0.72
VPS53-207ENST00000570510 CEP128Q6ZU80 1094 aa10.57□□□□□ -0.72
VPS53-207ENST00000570510 NEK10Q6ZWH5 1172 aa10.57□□□□□ -0.72
VPS53-207ENST00000570510 COX15Q7KZN9 410 aa10.57□□□□□ -0.72
VPS53-207ENST00000570510 OR5AR1Q8NGP9 310 aa10.57□□□□□ -0.72
VPS53-207ENST00000570510 HEXDCQ8WVB3 486 aa10.57□□□□□ -0.72
VPS53-207ENST00000570510 ULK4Q96C45 1275 aa10.57□□□□□ -0.72
VPS53-207ENST00000570510 COPS8Q99627 209 aa10.57□□□□□ -0.72
VPS53-207ENST00000570510 TREX2Q9BQ50 279 aaPredicted RBP10.57□□□□□ -0.72
VPS53-207ENST00000570510 SELENOSQ9BQE4 189 aa10.57□□□□□ -0.72
VPS53-207ENST00000570510 FSD1LQ9BXM9 530 aa10.57□□□□□ -0.72
VPS53-207ENST00000570510 OR52A5Q9H2C5 316 aa10.57□□□□□ -0.72
VPS53-207ENST00000570510 KLHL20Q9Y2M5 609 aa10.57□□□□□ -0.72
VPS53-207ENST00000570510 EPN1Q9Y6I3 576 aaPredicted RBP10.57□□□□□ -0.72
VPS53-207ENST00000570510 NUP210LQ5VU65 1888 aa10.57□□□□□ -0.72
VPS53-207ENST00000570510 VSTM2BA6NLU5 285 aa10.56□□□□□ -0.72
VPS53-207ENST00000570510 BHMG1C9JSJ3 638 aaPredicted RBP10.56□□□□□ -0.72
VPS53-207ENST00000570510 WISP2O76076 250 aa10.56□□□□□ -0.72
VPS53-207ENST00000570510 ZRANB2O95218 330 aaKnown RBP eCLIP10.56□□□□□ -0.72
VPS53-207ENST00000570510 ONECUT2O95948 504 aa10.56□□□□□ -0.72
VPS53-207ENST00000570510 COX6A1P12074 109 aa10.56□□□□□ -0.72
VPS53-207ENST00000570510 CD46P15529 392 aa10.56□□□□□ -0.72
VPS53-207ENST00000570510 FBLP22087 321 aaKnown RBP10.56□□□□□ -0.72
VPS53-207ENST00000570510 MCM3P25205 808 aa10.56□□□□□ -0.72
VPS53-207ENST00000570510 GRIA3P42263 894 aa10.56□□□□□ -0.72
VPS53-207ENST00000570510 NR2C2P49116 596 aa10.56□□□□□ -0.72
VPS53-207ENST00000570510 WNT3AP56704 352 aa10.56□□□□□ -0.72
VPS53-207ENST00000570510 ODF2Q5BJF6 829 aa10.56□□□□□ -0.72
VPS53-207ENST00000570510 TMEM211Q6ICI0 200 aa10.56□□□□□ -0.72
VPS53-207ENST00000570510 C11orf63Q6NUN7 778 aa10.56□□□□□ -0.72
VPS53-207ENST00000570510 KDELC1Q6UW63 502 aa10.56□□□□□ -0.72
VPS53-207ENST00000570510 ARHGEF18Q6ZSZ5 1173 aa10.56□□□□□ -0.72
VPS53-207ENST00000570510 GAS2L3Q86XJ1 694 aa10.56□□□□□ -0.72
VPS53-207ENST00000570510 DOLPP1Q86YN1 238 aa10.56□□□□□ -0.72
VPS53-207ENST00000570510 DMRTC2Q8IXT2 367 aaPredicted RBP10.56□□□□□ -0.72
VPS53-207ENST00000570510 CLYBLQ8N0X4 340 aa10.56□□□□□ -0.72
VPS53-207ENST00000570510 ACBD4Q8NC06 268 aa10.56□□□□□ -0.72
VPS53-207ENST00000570510 NUDT8Q8WV74 236 aa10.56□□□□□ -0.72
VPS53-207ENST00000570510 SLC22A18Q96BI1 424 aa10.56□□□□□ -0.72
VPS53-207ENST00000570510 RMND5BQ96G75 393 aaPredicted RBP10.56□□□□□ -0.72
VPS53-207ENST00000570510 MDFIQ99750 246 aa10.56□□□□□ -0.72
VPS53-207ENST00000570510 MESP1Q9BRJ9 268 aa10.56□□□□□ -0.72
VPS53-207ENST00000570510 POLDIP3Q9BY77 421 aaKnown RBP10.56□□□□□ -0.72
VPS53-207ENST00000570510 EFR3BQ9Y2G0 817 aa10.56□□□□□ -0.72
VPS53-207ENST00000570510 SBDSQ9Y3A5 250 aaKnown RBP eCLIP10.56□□□□□ -0.72
VPS53-207ENST00000570510 PCDHA13Q9Y5I0 950 aa10.56□□□□□ -0.72
VPS53-207ENST00000570510 ABCA4P78363 2273 aa10.56□□□□□ -0.72
VPS53-207ENST00000570510 ACANP16112 2415 aa10.55□□□□□ -0.72
VPS53-207ENST00000570510 NKX2-6A6NCS4 301 aa10.55□□□□□ -0.72
VPS53-207ENST00000570510 IDSB3KWA1 339 aa10.55□□□□□ -0.72
VPS53-207ENST00000570510 PJA2O43164 708 aa10.55□□□□□ -0.72
VPS53-207ENST00000570510 EPOP01588 193 aa10.55□□□□□ -0.72
VPS53-207ENST00000570510 ERVK-10P10266 1014 aa10.55□□□□□ -0.72
VPS53-207ENST00000570510 ITGAMP11215 1152 aa10.55□□□□□ -0.72
VPS53-207ENST00000570510 ITGALP20701 1170 aa10.55□□□□□ -0.72
VPS53-207ENST00000570510 CHRNB4P30926 498 aa10.55□□□□□ -0.72
VPS53-207ENST00000570510 CHRNA4P43681 627 aa10.55□□□□□ -0.72
VPS53-207ENST00000570510 COPS2P61201 443 aa10.55□□□□□ -0.72
VPS53-207ENST00000570510 PTPRCAPQ14761 206 aa10.55□□□□□ -0.72
VPS53-207ENST00000570510 SLC1A5Q15758 541 aa10.55□□□□□ -0.72
VPS53-207ENST00000570510 TEX44Q53QW1 395 aa10.55□□□□□ -0.72
VPS53-207ENST00000570510 PRMT9Q6P2P2 845 aa10.55□□□□□ -0.72
VPS53-207ENST00000570510 CLEC9AQ6UXN8 241 aa10.55□□□□□ -0.72
VPS53-207ENST00000570510 TBC1D21Q8IYX1 336 aa10.55□□□□□ -0.72
VPS53-207ENST00000570510 PQLC3Q8N755 202 aa10.55□□□□□ -0.72
VPS53-207ENST00000570510 HORMAD2Q8N7B1 307 aa10.55□□□□□ -0.72
VPS53-207ENST00000570510 TMEM178AQ8NBL3 297 aa10.55□□□□□ -0.72
VPS53-207ENST00000570510 IPMKQ8NFU5 416 aa10.55□□□□□ -0.72
VPS53-207ENST00000570510 OR4K2Q8NGD2 314 aa10.55□□□□□ -0.72
VPS53-207ENST00000570510 GOT1L1Q8NHS2 421 aaPredicted RBP10.55□□□□□ -0.72
VPS53-207ENST00000570510 SPATA3Q8NHX4 192 aa10.55□□□□□ -0.72
VPS53-207ENST00000570510 TADA1Q96BN2 335 aa10.55□□□□□ -0.72
VPS53-207ENST00000570510 BAG1Q99933 345 aaPredicted RBP10.55□□□□□ -0.72
VPS53-207ENST00000570510 PACSIN1Q9BY11 444 aa10.55□□□□□ -0.72
VPS53-207ENST00000570510 SPTLC3Q9NUV7 552 aa10.55□□□□□ -0.72
VPS53-207ENST00000570510 ST6GALNAC2Q9UJ37 374 aa10.55□□□□□ -0.72
VPS53-207ENST00000570510 PLAGL1Q9UM63 463 aa10.55□□□□□ -0.72
VPS53-207ENST00000570510 RPH3AQ9Y2J0 694 aaPredicted RBP10.55□□□□□ -0.72
VPS53-207ENST00000570510 ARL5AQ9Y689 179 aa10.55□□□□□ -0.72
VPS53-207ENST00000570510 NCOA6Q14686 2063 aaPredicted RBP10.54□□□□□ -0.72
VPS53-207ENST00000570510 IGHV1-45A0A0A0MS14 117 aa10.54□□□□□ -0.72
VPS53-207ENST00000570510 LOC285095A0A1B0GVY8 99 aa10.54□□□□□ -0.72
VPS53-207ENST00000570510 HYKKA2RU49 373 aa10.54□□□□□ -0.72
VPS53-207ENST00000570510 RCCD1A6NED2 376 aa10.54□□□□□ -0.72
VPS53-207ENST00000570510 USP27XA6NNY8 438 aa10.54□□□□□ -0.72
VPS53-207ENST00000570510 GAPDHSO14556 408 aaPredicted RBP10.54□□□□□ -0.72
VPS53-207ENST00000570510 APOL1O14791 398 aa10.54□□□□□ -0.72
VPS53-207ENST00000570510 PRPF4O43172 522 aaKnown RBP eCLIP10.54□□□□□ -0.72
VPS53-207ENST00000570510 NRDCO43847 1150 aa10.54□□□□□ -0.72
VPS53-207ENST00000570510 EIF2S1P05198 315 aaKnown RBP10.54□□□□□ -0.72
VPS53-207ENST00000570510 TPOP07202 933 aa10.54□□□□□ -0.72
VPS53-207ENST00000570510 CELA2AP08217 269 aa10.54□□□□□ -0.72
VPS53-207ENST00000570510 KDELR1P24390 212 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms