RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 SLC3A2P08195 630 aaKnown RBP3.18□□□□□ -1.9
VPS35-208ENST00000568612 HOXD4P09016 255 aaPredicted RBP3.18□□□□□ -1.9
VPS35-208ENST00000568612 NUDT17P0C025 328 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 UBTFL1P0CB47 393 aaPredicted RBP3.18□□□□□ -1.9
VPS35-208ENST00000568612 RNF224P0DH78 156 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 TRAPPC2P0DI81 140 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 TRAPPC2BP0DI82 140 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 NR2F6P10588 404 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 THRAP10827 490 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 MLNP12872 115 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 PTBP1P26599 531 aaKnown RBP eCLIP3.18□□□□□ -1.9
VPS35-208ENST00000568612 RPA1P27694 616 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 HTR1BP28222 390 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 CASP1P29466 404 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 CD6P30203 668 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 MAT2AP31153 395 aaKnown RBP3.18□□□□□ -1.9
VPS35-208ENST00000568612 RFC2P35250 354 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 HMGCLP35914 325 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 GJC1P36383 396 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 FDFT1P37268 417 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 PBX1P40424 430 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 GRIA3P42263 894 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 KIR3DL2P43630 455 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 YAP1P46937 504 aaKnown RBP3.18□□□□□ -1.9
VPS35-208ENST00000568612 CARSP49589 748 aaKnown RBP3.18□□□□□ -1.9
VPS35-208ENST00000568612 RARRES1P49788 294 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 CLCN5P51795 746 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 PGDP52209 483 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 DGKQP52824 942 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 SUCLG1P53597 346 aaKnown RBP3.18□□□□□ -1.9
VPS35-208ENST00000568612 AK2P54819 239 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 MFAP3P55082 362 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 TAS2R60P59551 318 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 YWHAGP61981 247 aaKnown RBP eCLIP3.18□□□□□ -1.9
VPS35-208ENST00000568612 ASIC1P78348 528 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 MPP1Q00013 466 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 MAT1AQ00266 395 aaKnown RBP3.18□□□□□ -1.9
VPS35-208ENST00000568612 PRKCZQ05513 592 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 ZNF33AQ06730 810 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 CHRNDQ07001 517 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 DSC1Q08554 894 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 GALNT2Q10471 571 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 ST3GAL1Q11201 340 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 LMAN2Q12907 356 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 ZNF177Q13360 481 aaPredicted RBP3.18□□□□□ -1.9
VPS35-208ENST00000568612 GALEQ14376 348 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 PTPRRQ15256 657 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 SSX2Q16385 188 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 MTHFSDQ2M296 383 aaKnown RBP3.18□□□□□ -1.9
VPS35-208ENST00000568612 ALG11Q2TAA5 492 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 FAM153CQ494X1 144 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 FAM98BQ52LJ0 330 aaKnown RBP3.18□□□□□ -1.9
VPS35-208ENST00000568612 SFT2D3Q587I9 215 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 RUNDC3AQ59EK9 446 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 ATAT1Q5SQI0 421 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 DDX59Q5T1V6 619 aaKnown RBP eCLIP3.18□□□□□ -1.9
VPS35-208ENST00000568612 STXBP5Q5T5C0 1151 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 C1orf185Q5T7R7 199 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 RSBN1Q5VWQ0 802 aaPredicted RBP3.18□□□□□ -1.9
VPS35-208ENST00000568612 FAM160B1Q5W0V3 765 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 FAM91A1Q658Y4 838 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 ITPRIPL1Q6GPH6 555 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 ELP2Q6IA86 826 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 SLC25A24Q6NUK1 477 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 TMEM108Q6UXF1 575 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 VITQ6UXI7 678 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 USP49Q70CQ1 688 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 DNAJB7Q7Z6W7 309 aaPredicted RBP3.18□□□□□ -1.9
VPS35-208ENST00000568612 AACSQ86V21 672 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 HORMAD1Q86X24 394 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 COL23A1Q86Y22 540 aaPredicted RBP3.18□□□□□ -1.9
VPS35-208ENST00000568612 DENND1CQ8IV53 801 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 DENND6AQ8IWF6 608 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 KLHL7Q8IXQ5 586 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 THNSL1Q8IYQ7 743 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 C16orf71Q8IYS4 520 aaPredicted RBP3.18□□□□□ -1.9
VPS35-208ENST00000568612 RNF113BQ8IZP6 322 aaKnown RBP3.18□□□□□ -1.9
VPS35-208ENST00000568612 UBE2J2Q8N2K1 259 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 CADM2Q8N3J6 435 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 NKAPQ8N5F7 415 aaKnown RBP3.18□□□□□ -1.9
VPS35-208ENST00000568612 C10orf53Q8N6V4 93 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 TTC29Q8NA56 475 aaPredicted RBP3.18□□□□□ -1.9
VPS35-208ENST00000568612 NAXEQ8NCW5 288 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 MCPH1Q8NEM0 835 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 OR6B3Q8NGW1 331 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 RNASE11Q8TAA1 199 aaKnown RBP3.18□□□□□ -1.9
VPS35-208ENST00000568612 CEP76Q8TAP6 659 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 PPP1R35Q8TAP8 253 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 ZNF384Q8TF68 577 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 PDCD6IPQ8WUM4 868 aaKnown RBP3.18□□□□□ -1.9
VPS35-208ENST00000568612 WASF1Q92558 559 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 ATOH1Q92858 354 aaPredicted RBP3.18□□□□□ -1.9
VPS35-208ENST00000568612 CELF1Q92879 486 aaKnown RBP3.18□□□□□ -1.9
VPS35-208ENST00000568612 TCEAL3Q969E4 200 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 MCRS1Q96EZ8 462 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 SGCZQ96LD1 299 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 CNOT6LQ96LI5 555 aaKnown RBP3.18□□□□□ -1.9
VPS35-208ENST00000568612 ADAD1Q96M93 576 aaKnown RBP3.18□□□□□ -1.9
VPS35-208ENST00000568612 ZNF285Q96NJ3 590 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 SLC46A1Q96NT5 459 aa3.18□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms