RNA–Protein interactions for RNA: ENST00000559844.5

SNX1-208, Transcript of sorting nexin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX1, Length 1,971 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-208ENST00000559844 TBC1D3FA6NER0 549 aaPredicted RBP17.28■□□□□ 0.36
SNX1-208ENST00000559844 TBC1D3LB9A6J9 549 aa17.28■□□□□ 0.36
SNX1-208ENST00000559844 C9JVG2 144 aa17.28■□□□□ 0.36
SNX1-208ENST00000559844 TSPAN6O43657 245 aa17.28■□□□□ 0.36
SNX1-208ENST00000559844 PSIP1O75475 530 aaKnown RBP17.28■□□□□ 0.36
SNX1-208ENST00000559844 TBC1D3HP0C7X1 549 aa17.28■□□□□ 0.36
SNX1-208ENST00000559844 PCSK2P16519 638 aa17.28■□□□□ 0.36
SNX1-208ENST00000559844 CTSCP53634 463 aa17.28■□□□□ 0.36
SNX1-208ENST00000559844 BNIP2Q12982 314 aa17.28■□□□□ 0.36
SNX1-208ENST00000559844 ANGPT1Q15389 498 aa17.28■□□□□ 0.36
SNX1-208ENST00000559844 TRIP10Q15642 601 aa17.28■□□□□ 0.36
SNX1-208ENST00000559844 PTCHD3Q3KNS1 767 aa17.28■□□□□ 0.36
SNX1-208ENST00000559844 BCL7AQ4VC05 210 aa17.28■□□□□ 0.36
SNX1-208ENST00000559844 TBC1D3GQ6DHY5 549 aa17.28■□□□□ 0.36
SNX1-208ENST00000559844 TBC1D3CQ6IPX1 549 aa17.28■□□□□ 0.36
SNX1-208ENST00000559844 ARPINQ7Z6K5 226 aa17.28■□□□□ 0.36
SNX1-208ENST00000559844 NLRP8Q86W28 1048 aa17.28■□□□□ 0.36
SNX1-208ENST00000559844 TBC1D3Q8IZP1 549 aaPredicted RBP17.28■□□□□ 0.36
SNX1-208ENST00000559844 CATSPER1Q8NEC5 780 aa17.28■□□□□ 0.36
SNX1-208ENST00000559844 LRGUKQ96M69 825 aa17.28■□□□□ 0.36
SNX1-208ENST00000559844 ZBTB18Q99592 522 aa17.28■□□□□ 0.36
SNX1-208ENST00000559844 SLC39A3Q9BRY0 314 aa17.28■□□□□ 0.36
SNX1-208ENST00000559844 TRIM15Q9C019 465 aa17.28■□□□□ 0.36
SNX1-208ENST00000559844 IL1RL2Q9HB29 575 aa17.28■□□□□ 0.36
SNX1-208ENST00000559844 WSB2Q9NYS7 404 aaPredicted RBP17.28■□□□□ 0.36
SNX1-208ENST00000559844 POLR3HQ9Y535 204 aaPredicted RBP17.28■□□□□ 0.36
SNX1-208ENST00000559844 SPAG17Q6Q759 2223 aa17.28■□□□□ 0.36
SNX1-208ENST00000559844 THADAQ6YHU6 1953 aa17.28■□□□□ 0.36
SNX1-208ENST00000559844 SLC5A10A0PJK1 596 aa17.28■□□□□ 0.36
SNX1-208ENST00000559844 FXYD1O00168 92 aa17.28■□□□□ 0.36
SNX1-208ENST00000559844 INPP4BO15327 924 aa17.28■□□□□ 0.36
SNX1-208ENST00000559844 LZTS3O60299 673 aaPredicted RBP17.28■□□□□ 0.36
SNX1-208ENST00000559844 RECQL5O94762 991 aaPredicted RBP17.28■□□□□ 0.36
SNX1-208ENST00000559844 SEMA4FO95754 770 aa17.28■□□□□ 0.36
SNX1-208ENST00000559844 CATP04040 527 aaKnown RBP17.28■□□□□ 0.36
SNX1-208ENST00000559844 G6PDP11413 515 aa17.28■□□□□ 0.36
SNX1-208ENST00000559844 EPORP19235 508 aa17.28■□□□□ 0.36
SNX1-208ENST00000559844 JAK1P23458 1154 aa17.28■□□□□ 0.36
SNX1-208ENST00000559844 RPL38P63173 70 aaKnown RBP17.28■□□□□ 0.36
SNX1-208ENST00000559844 RHDQ02161 417 aa17.28■□□□□ 0.36
SNX1-208ENST00000559844 DPTQ07507 201 aa17.28■□□□□ 0.36
SNX1-208ENST00000559844 RFTN2Q52LD8 501 aaPredicted RBP17.28■□□□□ 0.36
SNX1-208ENST00000559844 CACHD1Q5VU97 1274 aa17.28■□□□□ 0.36
SNX1-208ENST00000559844 TMEM220Q6QAJ8 160 aa17.28■□□□□ 0.36
SNX1-208ENST00000559844 DHFR2Q86XF0 187 aa17.28■□□□□ 0.36
SNX1-208ENST00000559844 SLC15A3Q8IY34 581 aa17.28■□□□□ 0.36
SNX1-208ENST00000559844 L3MBTL4Q8NA19 623 aa17.28■□□□□ 0.36
SNX1-208ENST00000559844 CXorf40AQ8TE69 158 aa17.28■□□□□ 0.36
SNX1-208ENST00000559844 DUS3LQ96G46 650 aaKnown RBP17.28■□□□□ 0.36
SNX1-208ENST00000559844 FOPNLQ96NB1 174 aa17.28■□□□□ 0.36
SNX1-208ENST00000559844 HBEGFQ99075 208 aa17.28■□□□□ 0.36
SNX1-208ENST00000559844 PCDHAC1Q9H158 963 aa17.28■□□□□ 0.36
SNX1-208ENST00000559844 LRTM1Q9HBL6 345 aa17.28■□□□□ 0.36
SNX1-208ENST00000559844 PREBQ9HCU5 417 aa17.28■□□□□ 0.36
SNX1-208ENST00000559844 WDFY4Q6ZS81 3184 aa17.27■□□□□ 0.36
SNX1-208ENST00000559844 PRSS51A0A1B0GVH4 220 aa17.27■□□□□ 0.36
SNX1-208ENST00000559844 LRRC72A6NJI9 287 aa17.27■□□□□ 0.36
SNX1-208ENST00000559844 NME4O00746 187 aa17.27■□□□□ 0.36
SNX1-208ENST00000559844 MMP20O60882 483 aa17.27■□□□□ 0.36
SNX1-208ENST00000559844 C6P13671 934 aa17.27■□□□□ 0.36
SNX1-208ENST00000559844 SLC6A2P23975 617 aa17.27■□□□□ 0.36
SNX1-208ENST00000559844 IL12AP29459 219 aa17.27■□□□□ 0.36
SNX1-208ENST00000559844 GPR1P46091 355 aa17.27■□□□□ 0.36
SNX1-208ENST00000559844 TLR1Q15399 786 aa17.27■□□□□ 0.36
SNX1-208ENST00000559844 OGFRL1Q5TC84 451 aaPredicted RBP17.27■□□□□ 0.36
SNX1-208ENST00000559844 WDR5BQ86VZ2 330 aa17.27■□□□□ 0.36
SNX1-208ENST00000559844 OR2T34Q8NGX1 318 aa17.27■□□□□ 0.36
SNX1-208ENST00000559844 N4BP2L2Q92802 583 aaPredicted RBP17.27■□□□□ 0.36
SNX1-208ENST00000559844 ZUFSPQ96AP4 578 aa17.27■□□□□ 0.36
SNX1-208ENST00000559844 VPS33AQ96AX1 596 aa17.27■□□□□ 0.36
SNX1-208ENST00000559844 CCDC138Q96M89 665 aa17.27■□□□□ 0.36
SNX1-208ENST00000559844 GPR174Q9BXC1 333 aa17.27■□□□□ 0.36
SNX1-208ENST00000559844 MUC13Q9H3R2 512 aa17.27■□□□□ 0.36
SNX1-208ENST00000559844 ASPDHA6ND91 283 aa17.26■□□□□ 0.35
SNX1-208ENST00000559844 RNGTTO60942 597 aaKnown RBP17.26■□□□□ 0.35
SNX1-208ENST00000559844 CLNS1AP54105 237 aaKnown RBP17.26■□□□□ 0.35
SNX1-208ENST00000559844 ATXN3P54252 364 aaPredicted RBP17.26■□□□□ 0.35
SNX1-208ENST00000559844 GTF2H3Q13889 308 aa17.26■□□□□ 0.35
SNX1-208ENST00000559844 TIGD2Q4W5G0 525 aa17.26■□□□□ 0.35
SNX1-208ENST00000559844 C6orf10Q5SRN2 563 aa17.26■□□□□ 0.35
SNX1-208ENST00000559844 IRAK1BP1Q5VVH5 260 aa17.26■□□□□ 0.35
SNX1-208ENST00000559844 LPCAT4Q643R3 524 aa17.26■□□□□ 0.35
SNX1-208ENST00000559844 IRGCQ6NXR0 463 aa17.26■□□□□ 0.35
SNX1-208ENST00000559844 PDSS2Q86YH6 399 aa17.26■□□□□ 0.35
SNX1-208ENST00000559844 SLC22A15Q8IZD6 547 aa17.26■□□□□ 0.35
SNX1-208ENST00000559844 RGL4Q8IZJ4 473 aa17.26■□□□□ 0.35
SNX1-208ENST00000559844 DPP10Q8N608 796 aa17.26■□□□□ 0.35
SNX1-208ENST00000559844 GLB1L3Q8NCI6 653 aaPredicted RBP17.26■□□□□ 0.35
SNX1-208ENST00000559844 LRFN3Q9BTN0 628 aa17.26■□□□□ 0.35
SNX1-208ENST00000559844 ELOVL6Q9H5J4 265 aa17.26■□□□□ 0.35
SNX1-208ENST00000559844 C1orf109Q9NX04 203 aa17.26■□□□□ 0.35
SNX1-208ENST00000559844 CNOT6Q9ULM6 557 aaKnown RBP17.26■□□□□ 0.35
SNX1-208ENST00000559844 COQ6Q9Y2Z9 468 aa17.26■□□□□ 0.35
SNX1-208ENST00000559844 PCDHA9Q9Y5H5 950 aa17.26■□□□□ 0.35
SNX1-208ENST00000559844 GON4LQ3T8J9 2241 aa17.26■□□□□ 0.35
SNX1-208ENST00000559844 KCNE1BA0A087WTH5 132 aa17.26■□□□□ 0.35
SNX1-208ENST00000559844 TCRBV3S1A0A5B6 114 aa17.26■□□□□ 0.35
SNX1-208ENST00000559844 SERTM1A2A2V5 107 aa17.26■□□□□ 0.35
SNX1-208ENST00000559844 LIN7AO14910 233 aaPredicted RBP17.26■□□□□ 0.35
SNX1-208ENST00000559844 ANKRD28O15084 1053 aa17.26■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms