RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 LSRQ86X29 649 aaPredicted RBP11.05□□□□□ -0.64
LDLR-208ENST00000558518 CLECL1Q8IZS7 167 aa11.05□□□□□ -0.64
LDLR-208ENST00000558518 ATP6V0D2Q8N8Y2 350 aa11.05□□□□□ -0.64
LDLR-208ENST00000558518 DTX3Q8N9I9 347 aa11.05□□□□□ -0.64
LDLR-208ENST00000558518 CD200R1Q8TD46 325 aa11.05□□□□□ -0.64
LDLR-208ENST00000558518 ZNF300Q96RE9 604 aaPredicted RBP11.05□□□□□ -0.64
LDLR-208ENST00000558518 GFM1Q96RP9 751 aaKnown RBP11.05□□□□□ -0.64
LDLR-208ENST00000558518 NUSAP1Q9BXS6 441 aaKnown RBP11.05□□□□□ -0.64
LDLR-208ENST00000558518 EMILIN2Q9BXX0 1053 aa11.05□□□□□ -0.64
LDLR-208ENST00000558518 BRINP2Q9C0B6 783 aa11.05□□□□□ -0.64
LDLR-208ENST00000558518 TEKT2Q9UIF3 430 aa11.05□□□□□ -0.64
LDLR-208ENST00000558518 NEU3Q9UQ49 428 aa11.05□□□□□ -0.64
LDLR-208ENST00000558518 MED16Q9Y2X0 877 aa11.05□□□□□ -0.64
LDLR-208ENST00000558518 EFCAB10A6NFE3 127 aa11.04□□□□□ -0.64
LDLR-208ENST00000558518 OR7A17O14581 309 aa11.04□□□□□ -0.64
LDLR-208ENST00000558518 CACNG3O60359 315 aa11.04□□□□□ -0.64
LDLR-208ENST00000558518 RHOQP17081 205 aa11.04□□□□□ -0.64
LDLR-208ENST00000558518 ENGP17813 658 aa11.04□□□□□ -0.64
LDLR-208ENST00000558518 HMGB2P26583 209 aaKnown RBP11.04□□□□□ -0.64
LDLR-208ENST00000558518 THPOP40225 353 aa11.04□□□□□ -0.64
LDLR-208ENST00000558518 CDH12P55289 794 aa11.04□□□□□ -0.64
LDLR-208ENST00000558518 SETMARQ53H47 684 aaPredicted RBP11.04□□□□□ -0.64
LDLR-208ENST00000558518 MSRB3Q8IXL7 192 aa11.04□□□□□ -0.64
LDLR-208ENST00000558518 GOLM1Q8NBJ4 401 aa11.04□□□□□ -0.64
LDLR-208ENST00000558518 DPF3Q92784 378 aa11.04□□□□□ -0.64
LDLR-208ENST00000558518 PPP1R2P1Q96PQ5 205 aa11.04□□□□□ -0.64
LDLR-208ENST00000558518 MTERF1Q99551 399 aaKnown RBP11.04□□□□□ -0.64
LDLR-208ENST00000558518 FAM124BQ9H5Z6 455 aaPredicted RBP11.04□□□□□ -0.64
LDLR-208ENST00000558518 ASB8Q9H765 288 aa11.04□□□□□ -0.64
LDLR-208ENST00000558518 DCAF13Q9NV06 445 aaKnown RBP11.04□□□□□ -0.64
LDLR-208ENST00000558518 SIRT5Q9NXA8 310 aa11.04□□□□□ -0.64
LDLR-208ENST00000558518 ZNF639Q9UID6 485 aa11.04□□□□□ -0.64
LDLR-208ENST00000558518 KPNA5O15131 536 aa11.04□□□□□ -0.64
LDLR-208ENST00000558518 SNX4O95219 450 aa11.04□□□□□ -0.64
LDLR-208ENST00000558518 PEX11BO96011 259 aa11.04□□□□□ -0.64
LDLR-208ENST00000558518 BOP1Q14137 746 aaKnown RBP11.04□□□□□ -0.64
LDLR-208ENST00000558518 MAD2L1BPQ15013 274 aaPredicted RBP11.04□□□□□ -0.64
LDLR-208ENST00000558518 PLEKHG6Q3KR16 790 aa11.04□□□□□ -0.64
LDLR-208ENST00000558518 XKR7Q5GH72 579 aa11.04□□□□□ -0.64
LDLR-208ENST00000558518 ATAD3CQ5T2N8 411 aa11.04□□□□□ -0.64
LDLR-208ENST00000558518 SZRD1Q7Z422 152 aa11.04□□□□□ -0.64
LDLR-208ENST00000558518 DENND1CQ8IV53 801 aa11.04□□□□□ -0.64
LDLR-208ENST00000558518 DACT3Q96B18 629 aaPredicted RBP11.04□□□□□ -0.64
LDLR-208ENST00000558518 UBA2Q9UBT2 640 aaPredicted RBP11.04□□□□□ -0.64
LDLR-208ENST00000558518 NUFIP1Q9UHK0 495 aaKnown RBP11.04□□□□□ -0.64
LDLR-208ENST00000558518 PRKAB1Q9Y478 270 aa11.04□□□□□ -0.64
LDLR-208ENST00000558518 PCDHGB6Q9Y5F9 930 aa11.04□□□□□ -0.64
LDLR-208ENST00000558518 RAI2Q9Y5P3 530 aa11.04□□□□□ -0.64
LDLR-208ENST00000558518 NT5C1B-RDH14C9J2C7 533 aa11.04□□□□□ -0.64
LDLR-208ENST00000558518 F5H5T6 163 aa11.04□□□□□ -0.64
LDLR-208ENST00000558518 IFRD1O00458 451 aaPredicted RBP11.04□□□□□ -0.64
LDLR-208ENST00000558518 HOXD8P13378 290 aaPredicted RBP11.04□□□□□ -0.64
LDLR-208ENST00000558518 FEN1P39748 380 aaKnown RBP11.04□□□□□ -0.64
LDLR-208ENST00000558518 SLC15A1P46059 708 aa11.04□□□□□ -0.64
LDLR-208ENST00000558518 GABARAPL2P60520 117 aa11.04□□□□□ -0.64
LDLR-208ENST00000558518 RPS14P62263 151 aaKnown RBP11.04□□□□□ -0.64
LDLR-208ENST00000558518 KCNC4Q03721 635 aa11.04□□□□□ -0.64
LDLR-208ENST00000558518 CAMK2GQ13555 558 aaPredicted RBP11.04□□□□□ -0.64
LDLR-208ENST00000558518 GNASQ5JWF2 1037 aa11.04□□□□□ -0.64
LDLR-208ENST00000558518 CTSL3PQ5NE16 218 aa11.04□□□□□ -0.64
LDLR-208ENST00000558518 AGMOQ6ZNB7 445 aa11.04□□□□□ -0.64
LDLR-208ENST00000558518 LILRB4Q8NHJ6 448 aa11.04□□□□□ -0.64
LDLR-208ENST00000558518 WDR36Q8NI36 951 aaKnown RBP11.04□□□□□ -0.64
LDLR-208ENST00000558518 NPLOC4Q8TAT6 608 aa11.04□□□□□ -0.64
LDLR-208ENST00000558518 SLC38A4Q969I6 547 aa11.04□□□□□ -0.64
LDLR-208ENST00000558518 FYTTD1Q96QD9 318 aaKnown RBP11.04□□□□□ -0.64
LDLR-208ENST00000558518 COQ7Q99807 217 aa11.04□□□□□ -0.64
LDLR-208ENST00000558518 CRLS1Q9UJA2 301 aa11.04□□□□□ -0.64
LDLR-208ENST00000558518 SMIM35A0A1B0GVV1 85 aa11.03□□□□□ -0.64
LDLR-208ENST00000558518 FPGTO14772 594 aa11.03□□□□□ -0.64
LDLR-208ENST00000558518 KIAA0513O60268 411 aa11.03□□□□□ -0.64
LDLR-208ENST00000558518 PRAMEF12O95522 483 aa11.03□□□□□ -0.64
LDLR-208ENST00000558518 COX7A2P14406 83 aa11.03□□□□□ -0.64
LDLR-208ENST00000558518 SOX6P35712 828 aa11.03□□□□□ -0.64
LDLR-208ENST00000558518 CRATP43155 626 aa11.03□□□□□ -0.64
LDLR-208ENST00000558518 ST3GAL4Q11206 333 aa11.03□□□□□ -0.64
LDLR-208ENST00000558518 NPRL3Q12980 569 aa11.03□□□□□ -0.64
LDLR-208ENST00000558518 GBX1Q14549 363 aa11.03□□□□□ -0.64
LDLR-208ENST00000558518 CCL14Q16627 93 aa11.03□□□□□ -0.64
LDLR-208ENST00000558518 COQ5Q5HYK3 327 aa11.03□□□□□ -0.64
LDLR-208ENST00000558518 FAM171A1Q5VUB5 890 aa11.03□□□□□ -0.64
LDLR-208ENST00000558518 MFSD14CQ5VZR4 134 aa11.03□□□□□ -0.64
LDLR-208ENST00000558518 SYT12Q8IV01 421 aa11.03□□□□□ -0.64
LDLR-208ENST00000558518 ASCC1Q8N9N2 400 aaKnown RBP11.03□□□□□ -0.64
LDLR-208ENST00000558518 ZNF675Q8TD23 568 aa11.03□□□□□ -0.64
LDLR-208ENST00000558518 ARIH1Q9Y4X5 557 aaPredicted RBP11.03□□□□□ -0.64
LDLR-208ENST00000558518 LCTP09848 1927 aa11.03□□□□□ -0.64
LDLR-208ENST00000558518 PCM1Q15154 2024 aa11.03□□□□□ -0.64
LDLR-208ENST00000558518 CLIC1O00299 241 aa11.03□□□□□ -0.64
LDLR-208ENST00000558518 WWP2O00308 870 aa11.03□□□□□ -0.64
LDLR-208ENST00000558518 MGEA5O60502 916 aa11.03□□□□□ -0.64
LDLR-208ENST00000558518 PTHP01270 115 aa11.03□□□□□ -0.64
LDLR-208ENST00000558518 EPB42P16452 691 aa11.03□□□□□ -0.64
LDLR-208ENST00000558518 ARPC4P59998 168 aa11.03□□□□□ -0.64
LDLR-208ENST00000558518 SPIBQ01892 262 aa11.03□□□□□ -0.64
LDLR-208ENST00000558518 SLC14A2Q15849 920 aa11.03□□□□□ -0.64
LDLR-208ENST00000558518 KIAA1614Q5VZ46 1190 aa11.03□□□□□ -0.64
LDLR-208ENST00000558518 CYP2U1Q7Z449 544 aa11.03□□□□□ -0.64
LDLR-208ENST00000558518 VMP1Q96GC9 406 aa11.03□□□□□ -0.64
LDLR-208ENST00000558518 CNDP2Q96KP4 475 aaKnown RBP11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms