RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 TRIM64A6NGJ6 449 aa12.29□□□□□ -0.44
SHMT2-229ENST00000557348 NR5A2O00482 541 aa12.29□□□□□ -0.44
SHMT2-229ENST00000557348 EEDO75530 441 aaKnown RBP12.29□□□□□ -0.44
SHMT2-229ENST00000557348 RSL1D1O76021 490 aaKnown RBP12.29□□□□□ -0.44
SHMT2-229ENST00000557348 HSD3B1P14060 373 aa12.29□□□□□ -0.44
SHMT2-229ENST00000557348 DRD1P21728 446 aa12.29□□□□□ -0.44
SHMT2-229ENST00000557348 JAK1P23458 1154 aa12.29□□□□□ -0.44
SHMT2-229ENST00000557348 HSD3B2P26439 372 aa12.29□□□□□ -0.44
SHMT2-229ENST00000557348 DRD3P35462 400 aa12.29□□□□□ -0.44
SHMT2-229ENST00000557348 HNF4AP41235 474 aa12.29□□□□□ -0.44
SHMT2-229ENST00000557348 GDF5P43026 501 aa12.29□□□□□ -0.44
SHMT2-229ENST00000557348 METAP1P53582 386 aa12.29□□□□□ -0.44
SHMT2-229ENST00000557348 ZNF423Q2M1K9 1284 aa12.29□□□□□ -0.44
SHMT2-229ENST00000557348 AP5B1Q2VPB7 878 aa12.29□□□□□ -0.44
SHMT2-229ENST00000557348 C18orf21Q32NC0 220 aaPredicted RBP12.29□□□□□ -0.44
SHMT2-229ENST00000557348 ZNF658BQ4V348 819 aaPredicted RBP12.29□□□□□ -0.44
SHMT2-229ENST00000557348 NEK5Q6P3R8 708 aa12.29□□□□□ -0.44
SHMT2-229ENST00000557348 NCCRP1Q6ZVX7 275 aaPredicted RBP12.29□□□□□ -0.44
SHMT2-229ENST00000557348 LPCAT2Q7L5N7 544 aa12.29□□□□□ -0.44
SHMT2-229ENST00000557348 HPS6Q86YV9 775 aa12.29□□□□□ -0.44
SHMT2-229ENST00000557348 MINDY1Q8N5J2 469 aa12.29□□□□□ -0.44
SHMT2-229ENST00000557348 BEND7Q8N7W2 519 aaPredicted RBP12.29□□□□□ -0.44
SHMT2-229ENST00000557348 PNPT1Q8TCS8 783 aaKnown RBP12.29□□□□□ -0.44
SHMT2-229ENST00000557348 FAM131CQ96AQ9 280 aa12.29□□□□□ -0.44
SHMT2-229ENST00000557348 CCDC124Q96CT7 223 aaKnown RBP12.29□□□□□ -0.44
SHMT2-229ENST00000557348 ASB9Q96DX5 294 aa12.29□□□□□ -0.44
SHMT2-229ENST00000557348 CDK15Q96Q40 435 aa12.29□□□□□ -0.44
SHMT2-229ENST00000557348 UHRF1Q96T88 793 aaPredicted RBP12.29□□□□□ -0.44
SHMT2-229ENST00000557348 NPAS2Q99743 824 aa12.29□□□□□ -0.44
SHMT2-229ENST00000557348 TUBA1CQ9BQE3 449 aa12.29□□□□□ -0.44
SHMT2-229ENST00000557348 MUC13Q9H3R2 512 aa12.29□□□□□ -0.44
SHMT2-229ENST00000557348 CLK4Q9HAZ1 481 aaKnown RBP12.29□□□□□ -0.44
SHMT2-229ENST00000557348 HCN2Q9UL51 889 aa12.29□□□□□ -0.44
SHMT2-229ENST00000557348 ZNF490Q9ULM2 529 aaPredicted RBP12.29□□□□□ -0.44
SHMT2-229ENST00000557348 COQ6Q9Y2Z9 468 aa12.29□□□□□ -0.44
SHMT2-229ENST00000557348 PTGDR2Q9Y5Y4 395 aa12.29□□□□□ -0.44
SHMT2-229ENST00000557348 TRIM64BA6NI03 449 aa12.29□□□□□ -0.44
SHMT2-229ENST00000557348 CCDC154A6NI56 674 aa12.29□□□□□ -0.44
SHMT2-229ENST00000557348 ZNF839A8K0R7 811 aa12.29□□□□□ -0.44
SHMT2-229ENST00000557348 ARHGEF33A8MVX0 844 aa12.29□□□□□ -0.44
SHMT2-229ENST00000557348 LOC730098B7Z3J9 87 aa12.29□□□□□ -0.44
SHMT2-229ENST00000557348 H3BNH8 94 aa12.29□□□□□ -0.44
SHMT2-229ENST00000557348 FBP2O00757 339 aa12.29□□□□□ -0.44
SHMT2-229ENST00000557348 MID1O15344 667 aa12.29□□□□□ -0.44
SHMT2-229ENST00000557348 CFLARO15519 480 aa12.29□□□□□ -0.44
SHMT2-229ENST00000557348 KCNJ13O60928 360 aa12.29□□□□□ -0.44
SHMT2-229ENST00000557348 LILRB5O75023 590 aa12.29□□□□□ -0.44
SHMT2-229ENST00000557348 PCDH8O95206 1070 aa12.29□□□□□ -0.44
SHMT2-229ENST00000557348 DNTTP04053 509 aa12.29□□□□□ -0.44
SHMT2-229ENST00000557348 JUPP14923 745 aa12.29□□□□□ -0.44
SHMT2-229ENST00000557348 GLULP15104 373 aa12.29□□□□□ -0.44
SHMT2-229ENST00000557348 HSD17B2P37059 387 aa12.29□□□□□ -0.44
SHMT2-229ENST00000557348 POLR2JP52435 117 aaKnown RBP12.29□□□□□ -0.44
SHMT2-229ENST00000557348 THOP1P52888 689 aa12.29□□□□□ -0.44
SHMT2-229ENST00000557348 RPS21P63220 83 aaKnown RBP12.29□□□□□ -0.44
SHMT2-229ENST00000557348 MRPS21P82921 87 aaKnown RBP12.29□□□□□ -0.44
SHMT2-229ENST00000557348 CSTF3Q12996 717 aaKnown RBP12.29□□□□□ -0.44
SHMT2-229ENST00000557348 ABRAXAS2Q15018 415 aa12.29□□□□□ -0.44
SHMT2-229ENST00000557348 LRRC36Q1X8D7 754 aa12.29□□□□□ -0.44
SHMT2-229ENST00000557348 PNCKQ6P2M8 343 aa12.29□□□□□ -0.44
SHMT2-229ENST00000557348 CCDC80Q76M96 950 aa12.29□□□□□ -0.44
SHMT2-229ENST00000557348 LRRTM4Q86VH4 590 aa12.29□□□□□ -0.44
SHMT2-229ENST00000557348 CARM1Q86X55 608 aa12.29□□□□□ -0.44
SHMT2-229ENST00000557348 ZFAND4Q86XD8 727 aa12.29□□□□□ -0.44
SHMT2-229ENST00000557348 FUNDC1Q8IVP5 155 aa12.29□□□□□ -0.44
SHMT2-229ENST00000557348 SFRP1Q8N474 314 aa12.29□□□□□ -0.44
SHMT2-229ENST00000557348 HDDC3Q8N4P3 179 aa12.29□□□□□ -0.44
SHMT2-229ENST00000557348 MINDY2Q8NBR6 621 aa12.29□□□□□ -0.44
SHMT2-229ENST00000557348 OR2T11Q8NH01 316 aa12.29□□□□□ -0.44
SHMT2-229ENST00000557348 OR56A3Q8NH54 315 aa12.29□□□□□ -0.44
SHMT2-229ENST00000557348 DNAJB8Q8NHS0 232 aa12.29□□□□□ -0.44
SHMT2-229ENST00000557348 REPS1Q96D71 796 aa12.29□□□□□ -0.44
SHMT2-229ENST00000557348 DOK1Q99704 481 aa12.29□□□□□ -0.44
SHMT2-229ENST00000557348 ANKRD60Q9BZ19 345 aa12.29□□□□□ -0.44
SHMT2-229ENST00000557348 TRIM15Q9C019 465 aa12.29□□□□□ -0.44
SHMT2-229ENST00000557348 RMI1Q9H9A7 625 aa12.29□□□□□ -0.44
SHMT2-229ENST00000557348 LRTM1Q9HBL6 345 aa12.29□□□□□ -0.44
SHMT2-229ENST00000557348 PHPT1Q9NRX4 125 aaPredicted RBP12.29□□□□□ -0.44
SHMT2-229ENST00000557348 DDX18Q9NVP1 670 aaKnown RBP12.29□□□□□ -0.44
SHMT2-229ENST00000557348 C1orf109Q9NX04 203 aa12.29□□□□□ -0.44
SHMT2-229ENST00000557348 ADA2Q9NZK5 511 aa12.29□□□□□ -0.44
SHMT2-229ENST00000557348 MBD1Q9UIS9 605 aaPredicted RBP12.29□□□□□ -0.44
SHMT2-229ENST00000557348 MAPRE3Q9UPY8 281 aa12.29□□□□□ -0.44
SHMT2-229ENST00000557348 PCDHGA7Q9Y5G6 932 aa12.29□□□□□ -0.44
SHMT2-229ENST00000557348 PRRC2BQ5JSZ5 2229 aaKnown RBP12.28□□□□□ -0.44
SHMT2-229ENST00000557348 RANBP2P49792 3224 aaKnown RBP12.28□□□□□ -0.44
SHMT2-229ENST00000557348 K7EQS6 105 aa12.28□□□□□ -0.44
SHMT2-229ENST00000557348 PRPS2P11908 318 aa12.28□□□□□ -0.44
SHMT2-229ENST00000557348 CTHP32929 405 aa12.28□□□□□ -0.44
SHMT2-229ENST00000557348 DIO3P55073 304 aa12.28□□□□□ -0.44
SHMT2-229ENST00000557348 GRSF1Q12849 480 aaKnown RBP eCLIP12.28□□□□□ -0.44
SHMT2-229ENST00000557348 ABRQ12979 859 aa12.28□□□□□ -0.44
SHMT2-229ENST00000557348 BNIP2Q12982 314 aa12.28□□□□□ -0.44
SHMT2-229ENST00000557348 C8orf82Q6P1X6 216 aaPredicted RBP12.28□□□□□ -0.44
SHMT2-229ENST00000557348 AGTRAPQ6RW13 159 aa12.28□□□□□ -0.44
SHMT2-229ENST00000557348 CYP20A1Q6UW02 462 aa12.28□□□□□ -0.44
SHMT2-229ENST00000557348 MBOAT1Q6ZNC8 495 aa12.28□□□□□ -0.44
SHMT2-229ENST00000557348 SFTPA1Q8IWL2 248 aa12.28□□□□□ -0.44
SHMT2-229ENST00000557348 OXR1Q8N573 874 aa12.28□□□□□ -0.44
SHMT2-229ENST00000557348 AADATQ8N5Z0 425 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms