RNA–Protein interactions for RNA: ENST00000556412.4

VIPAS39-208, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 2 BASIC

Gene VIPAS39, Length 1,832 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-208ENST00000556412 FAM111AQ96PZ2 611 aa13.55□□□□□ -0.24
VIPAS39-208ENST00000556412 DPYSL5Q9BPU6 564 aa13.55□□□□□ -0.24
VIPAS39-208ENST00000556412 TMEM79Q9BSE2 394 aa13.55□□□□□ -0.24
VIPAS39-208ENST00000556412 RAB33BQ9H082 229 aa13.55□□□□□ -0.24
VIPAS39-208ENST00000556412 CNOT10Q9H9A5 744 aaKnown RBP13.55□□□□□ -0.24
VIPAS39-208ENST00000556412 SLC17A7Q9P2U7 560 aa13.55□□□□□ -0.24
VIPAS39-208ENST00000556412 EPHA6Q9UF33 1036 aa13.55□□□□□ -0.24
VIPAS39-208ENST00000556412 MN1Q10571 1320 aaPredicted RBP13.55□□□□□ -0.24
VIPAS39-208ENST00000556412 ASCC3Q8N3C0 2202 aaKnown RBP13.55□□□□□ -0.24
VIPAS39-208ENST00000556412 FAM149AA5PLN7 773 aa13.55□□□□□ -0.24
VIPAS39-208ENST00000556412 TLCD2A6NGC4 264 aa13.55□□□□□ -0.24
VIPAS39-208ENST00000556412 TAPBPO15533 448 aa13.55□□□□□ -0.24
VIPAS39-208ENST00000556412 PLIN3O60664 434 aa13.55□□□□□ -0.24
VIPAS39-208ENST00000556412 CSO75390 466 aaKnown RBP13.55□□□□□ -0.24
VIPAS39-208ENST00000556412 DKK1O94907 266 aa13.55□□□□□ -0.24
VIPAS39-208ENST00000556412 C9P02748 559 aa13.55□□□□□ -0.24
VIPAS39-208ENST00000556412 PROCP04070 461 aa13.55□□□□□ -0.24
VIPAS39-208ENST00000556412 SBK3P0C264 359 aa13.55□□□□□ -0.24
VIPAS39-208ENST00000556412 JUPP14923 745 aa13.55□□□□□ -0.24
VIPAS39-208ENST00000556412 PDX1P52945 283 aa13.55□□□□□ -0.24
VIPAS39-208ENST00000556412 YBX1P67809 324 aaKnown RBP13.55□□□□□ -0.24
VIPAS39-208ENST00000556412 TNFAIP8L3Q5GJ75 292 aa13.55□□□□□ -0.24
VIPAS39-208ENST00000556412 ADCK2Q7Z695 626 aa13.55□□□□□ -0.24
VIPAS39-208ENST00000556412 SLITRK4Q8IW52 837 aa13.55□□□□□ -0.24
VIPAS39-208ENST00000556412 CHCHD4Q8N4Q1 142 aa13.55□□□□□ -0.24
VIPAS39-208ENST00000556412 SNX31Q8N9S9 440 aa13.55□□□□□ -0.24
VIPAS39-208ENST00000556412 ARMC2Q8NEN0 867 aa13.55□□□□□ -0.24
VIPAS39-208ENST00000556412 OR2A1Q8NGT9 310 aa13.55□□□□□ -0.24
VIPAS39-208ENST00000556412 OR56A3Q8NH54 315 aa13.55□□□□□ -0.24
VIPAS39-208ENST00000556412 TMEM74Q96NL1 305 aa13.55□□□□□ -0.24
VIPAS39-208ENST00000556412 DEPDC7Q96QD5 511 aa13.55□□□□□ -0.24
VIPAS39-208ENST00000556412 CD180Q99467 661 aa13.55□□□□□ -0.24
VIPAS39-208ENST00000556412 INTS7Q9NVH2 962 aaKnown RBP13.55□□□□□ -0.24
VIPAS39-208ENST00000556412 SOHLH2Q9NX45 425 aa13.55□□□□□ -0.24
VIPAS39-208ENST00000556412 MKS1Q9NXB0 559 aa13.55□□□□□ -0.24
VIPAS39-208ENST00000556412 PTBP2Q9UKA9 531 aaKnown RBP13.55□□□□□ -0.24
VIPAS39-208ENST00000556412 SLC22A14Q9Y267 594 aa13.55□□□□□ -0.24
VIPAS39-208ENST00000556412 IGHV5-51A0A0C4DH38 117 aa13.54□□□□□ -0.24
VIPAS39-208ENST00000556412 A0A0J9YY10 115 aa13.54□□□□□ -0.24
VIPAS39-208ENST00000556412 SLC9B1P1A6NJY1 282 aa13.54□□□□□ -0.24
VIPAS39-208ENST00000556412 STK16O75716 305 aa13.54□□□□□ -0.24
VIPAS39-208ENST00000556412 SIX3O95343 332 aaPredicted RBP13.54□□□□□ -0.24
VIPAS39-208ENST00000556412 THRAP10827 490 aa13.54□□□□□ -0.24
VIPAS39-208ENST00000556412 MYL2P10916 166 aa13.54□□□□□ -0.24
VIPAS39-208ENST00000556412 MAGP20916 626 aa13.54□□□□□ -0.24
VIPAS39-208ENST00000556412 CCND1P24385 295 aa13.54□□□□□ -0.24
VIPAS39-208ENST00000556412 CMPK1P30085 196 aa13.54□□□□□ -0.24
VIPAS39-208ENST00000556412 LSSP48449 732 aa13.54□□□□□ -0.24
VIPAS39-208ENST00000556412 ALDH18A1P54886 795 aaKnown RBP13.54□□□□□ -0.24
VIPAS39-208ENST00000556412 SETDB1Q15047 1291 aa13.54□□□□□ -0.24
VIPAS39-208ENST00000556412 CDKL4Q5MAI5 379 aa13.54□□□□□ -0.24
VIPAS39-208ENST00000556412 CDCP2Q5VXM1 449 aa13.54□□□□□ -0.24
VIPAS39-208ENST00000556412 ICE2Q659A1 982 aa13.54□□□□□ -0.24
VIPAS39-208ENST00000556412 THOC6Q86W42 341 aaKnown RBP13.54□□□□□ -0.24
VIPAS39-208ENST00000556412 MARCH9Q86YJ5 346 aa13.54□□□□□ -0.24
VIPAS39-208ENST00000556412 TMEM151AQ8N4L1 468 aa13.54□□□□□ -0.24
VIPAS39-208ENST00000556412 OR2L3Q8NG85 312 aa13.54□□□□□ -0.24
VIPAS39-208ENST00000556412 FLVCR1-AS1Q8TAF5 88 aa13.54□□□□□ -0.24
VIPAS39-208ENST00000556412 ADAMTS14Q8WXS8 1223 aa13.54□□□□□ -0.24
VIPAS39-208ENST00000556412 SGPP1Q9BX95 441 aa13.54□□□□□ -0.24
VIPAS39-208ENST00000556412 MRPS30Q9NP92 439 aaKnown RBP13.54□□□□□ -0.24
VIPAS39-208ENST00000556412 PIKFYVEQ9Y2I7 2098 aa13.54□□□□□ -0.24
VIPAS39-208ENST00000556412 PLLPQ9Y342 182 aa13.54□□□□□ -0.24
VIPAS39-208ENST00000556412 DYRK1BQ9Y463 629 aa13.54□□□□□ -0.24
VIPAS39-208ENST00000556412 ASB1Q9Y576 335 aa13.54□□□□□ -0.24
VIPAS39-208ENST00000556412 ANGPTL3Q9Y5C1 460 aa13.54□□□□□ -0.24
VIPAS39-208ENST00000556412 ACTL7BQ9Y614 415 aa13.54□□□□□ -0.24
VIPAS39-208ENST00000556412 CFAP54Q96N23 3096 aa13.53□□□□□ -0.24
VIPAS39-208ENST00000556412 LRRC14BA6NHZ5 514 aa13.53□□□□□ -0.24
VIPAS39-208ENST00000556412 A8MT66 165 aa13.53□□□□□ -0.24
VIPAS39-208ENST00000556412 DYNC1I1O14576 645 aa13.53□□□□□ -0.24
VIPAS39-208ENST00000556412 PRICKLE3O43900 615 aaPredicted RBP13.53□□□□□ -0.24
VIPAS39-208ENST00000556412 TYROBPO43914 113 aa13.53□□□□□ -0.24
VIPAS39-208ENST00000556412 IPO13O94829 963 aaKnown RBP13.53□□□□□ -0.24
VIPAS39-208ENST00000556412 CCNDBP1O95273 360 aa13.53□□□□□ -0.24
VIPAS39-208ENST00000556412 ST6GAL1P15907 406 aa13.53□□□□□ -0.24
VIPAS39-208ENST00000556412 EEF1DP29692 281 aaKnown RBP13.53□□□□□ -0.24
VIPAS39-208ENST00000556412 FOXC1Q12948 553 aa13.53□□□□□ -0.24
VIPAS39-208ENST00000556412 SLC5A12Q1EHB4 618 aa13.53□□□□□ -0.24
VIPAS39-208ENST00000556412 ISXQ2M1V0 245 aa13.53□□□□□ -0.24
VIPAS39-208ENST00000556412 TTMPQ5BVD1 217 aa13.53□□□□□ -0.24
VIPAS39-208ENST00000556412 AGBL2Q5U5Z8 902 aa13.53□□□□□ -0.24
VIPAS39-208ENST00000556412 KIAA1614Q5VZ46 1190 aa13.53□□□□□ -0.24
VIPAS39-208ENST00000556412 RAB44Q7Z6P3 723 aaPredicted RBP13.53□□□□□ -0.24
VIPAS39-208ENST00000556412 ANKRD42Q8N9B4 389 aa13.53□□□□□ -0.24
VIPAS39-208ENST00000556412 ATP6V1G3Q96LB4 118 aa13.53□□□□□ -0.24
VIPAS39-208ENST00000556412 SELENOSQ9BQE4 189 aa13.53□□□□□ -0.24
VIPAS39-208ENST00000556412 CD244Q9BZW8 370 aa13.53□□□□□ -0.24
VIPAS39-208ENST00000556412 STRADBQ9C0K7 418 aa13.53□□□□□ -0.24
VIPAS39-208ENST00000556412 PCBD2Q9H0N5 130 aa13.53□□□□□ -0.24
VIPAS39-208ENST00000556412 C1GALT1Q9NS00 363 aa13.53□□□□□ -0.24
VIPAS39-208ENST00000556412 OPTCQ9UBM4 332 aa13.53□□□□□ -0.24
VIPAS39-208ENST00000556412 TMCO1Q9UM00 188 aa13.53□□□□□ -0.24
VIPAS39-208ENST00000556412 TARM1B6A8C7 271 aa13.53□□□□□ -0.24
VIPAS39-208ENST00000556412 MAP3K7O43318 606 aa13.53□□□□□ -0.24
VIPAS39-208ENST00000556412 DLX3O60479 287 aa13.53□□□□□ -0.24
VIPAS39-208ENST00000556412 PRAMEF10O60809 474 aa13.53□□□□□ -0.24
VIPAS39-208ENST00000556412 CPA3P15088 417 aa13.53□□□□□ -0.24
VIPAS39-208ENST00000556412 ATP5F1P24539 256 aaPredicted RBP13.53□□□□□ -0.24
VIPAS39-208ENST00000556412 HPDP32754 393 aaPredicted RBP13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms