RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 CD84Q9UIB8 345 aa7.3□□□□□ -1.24
LIMA1-213ENST00000552720 ERGIC3Q9Y282 383 aa7.3□□□□□ -1.24
LIMA1-213ENST00000552720 SNX5Q9Y5X3 404 aa7.3□□□□□ -1.24
LIMA1-213ENST00000552720 PLXND1Q9Y4D7 1925 aa7.3□□□□□ -1.24
LIMA1-213ENST00000552720 GREM1O60565 184 aa7.29□□□□□ -1.24
LIMA1-213ENST00000552720 WDR47O94967 919 aa7.29□□□□□ -1.24
LIMA1-213ENST00000552720 ANGPTL1O95841 491 aa7.29□□□□□ -1.24
LIMA1-213ENST00000552720 IGFBP5P24593 272 aa7.29□□□□□ -1.24
LIMA1-213ENST00000552720 MASP1P48740 699 aa7.29□□□□□ -1.24
LIMA1-213ENST00000552720 CD97P48960 835 aa7.29□□□□□ -1.24
LIMA1-213ENST00000552720 TUFMP49411 452 aaKnown RBP7.29□□□□□ -1.24
LIMA1-213ENST00000552720 CLDN8P56748 225 aa7.29□□□□□ -1.24
LIMA1-213ENST00000552720 GABARAPL2P60520 117 aa7.29□□□□□ -1.24
LIMA1-213ENST00000552720 VBP1P61758 197 aa7.29□□□□□ -1.24
LIMA1-213ENST00000552720 VLDLRP98155 873 aa7.29□□□□□ -1.24
LIMA1-213ENST00000552720 IFITM3Q01628 133 aa7.29□□□□□ -1.24
LIMA1-213ENST00000552720 RELAQ04206 551 aa7.29□□□□□ -1.24
LIMA1-213ENST00000552720 GBX1Q14549 363 aa7.29□□□□□ -1.24
LIMA1-213ENST00000552720 ADPRMQ3LIE5 342 aa7.29□□□□□ -1.24
LIMA1-213ENST00000552720 ATP13A5Q4VNC0 1218 aa7.29□□□□□ -1.24
LIMA1-213ENST00000552720 DGKKQ5KSL6 1271 aa7.29□□□□□ -1.24
LIMA1-213ENST00000552720 PERM1Q5SV97 790 aa7.29□□□□□ -1.24
LIMA1-213ENST00000552720 LRIF1Q5T3J3 769 aa7.29□□□□□ -1.24
LIMA1-213ENST00000552720 TMEM236Q5W0B7 351 aa7.29□□□□□ -1.24
LIMA1-213ENST00000552720 ATG9BQ674R7 924 aa7.29□□□□□ -1.24
LIMA1-213ENST00000552720 GRAMD4Q6IC98 578 aa7.29□□□□□ -1.24
LIMA1-213ENST00000552720 TPGS1Q6ZTW0 290 aa7.29□□□□□ -1.24
LIMA1-213ENST00000552720 UBE2R2Q712K3 238 aaPredicted RBP7.29□□□□□ -1.24
LIMA1-213ENST00000552720 TMCO5AQ8N6Q1 288 aa7.29□□□□□ -1.24
LIMA1-213ENST00000552720 CDC26Q8NHZ8 85 aa7.29□□□□□ -1.24
LIMA1-213ENST00000552720 SP7Q8TDD2 431 aaPredicted RBP7.29□□□□□ -1.24
LIMA1-213ENST00000552720 ZFP90Q8TF47 636 aa7.29□□□□□ -1.24
LIMA1-213ENST00000552720 AUTS2Q8WXX7 1259 aa7.29□□□□□ -1.24
LIMA1-213ENST00000552720 SH3YL1Q96HL8 342 aaPredicted RBP7.29□□□□□ -1.24
LIMA1-213ENST00000552720 SCLYQ96I15 445 aa7.29□□□□□ -1.24
LIMA1-213ENST00000552720 BBS2Q9BXC9 721 aa7.29□□□□□ -1.24
LIMA1-213ENST00000552720 ATG10Q9H0Y0 220 aa7.29□□□□□ -1.24
LIMA1-213ENST00000552720 SLC32A1Q9H598 525 aa7.29□□□□□ -1.24
LIMA1-213ENST00000552720 STARD7Q9NQZ5 370 aa7.29□□□□□ -1.24
LIMA1-213ENST00000552720 TRNAU1APQ9NX07 287 aaKnown RBP7.29□□□□□ -1.24
LIMA1-213ENST00000552720 DNMT3BQ9UBC3 853 aaKnown RBP7.29□□□□□ -1.24
LIMA1-213ENST00000552720 SH3GLB1Q9Y371 365 aa7.29□□□□□ -1.24
LIMA1-213ENST00000552720 YIPF1Q9Y548 306 aa7.29□□□□□ -1.24
LIMA1-213ENST00000552720 A0A096LPI6 279 aa7.29□□□□□ -1.24
LIMA1-213ENST00000552720 ZNF99A8MXY4 864 aaPredicted RBP7.29□□□□□ -1.24
LIMA1-213ENST00000552720 NRG2O14511 850 aaPredicted RBP7.29□□□□□ -1.24
LIMA1-213ENST00000552720 RFXANKO14593 260 aa7.29□□□□□ -1.24
LIMA1-213ENST00000552720 YY2O15391 372 aa7.29□□□□□ -1.24
LIMA1-213ENST00000552720 SLC16A6O15403 523 aa7.29□□□□□ -1.24
LIMA1-213ENST00000552720 CBFA2T3O75081 653 aa7.29□□□□□ -1.24
LIMA1-213ENST00000552720 UGT2B11O75310 529 aa7.29□□□□□ -1.24
LIMA1-213ENST00000552720 ERN1O75460 977 aaKnown RBP7.29□□□□□ -1.24
LIMA1-213ENST00000552720 KRT6AP02538 564 aa7.29□□□□□ -1.24
LIMA1-213ENST00000552720 KRT6BP04259 564 aa7.29□□□□□ -1.24
LIMA1-213ENST00000552720 ANXA5P08758 320 aa7.29□□□□□ -1.24
LIMA1-213ENST00000552720 SELPP16109 830 aa7.29□□□□□ -1.24
LIMA1-213ENST00000552720 ZNF12P17014 697 aa7.29□□□□□ -1.24
LIMA1-213ENST00000552720 LHCGRP22888 699 aa7.29□□□□□ -1.24
LIMA1-213ENST00000552720 CD70P32970 193 aa7.29□□□□□ -1.24
LIMA1-213ENST00000552720 SPAM1P38567 509 aa7.29□□□□□ -1.24
LIMA1-213ENST00000552720 RXRGP48443 463 aa7.29□□□□□ -1.24
LIMA1-213ENST00000552720 GSSP48637 474 aa7.29□□□□□ -1.24
LIMA1-213ENST00000552720 KRT6CP48668 564 aa7.29□□□□□ -1.24
LIMA1-213ENST00000552720 BCAP31P51572 246 aa7.29□□□□□ -1.24
LIMA1-213ENST00000552720 SMARCB1Q12824 385 aa7.29□□□□□ -1.24
LIMA1-213ENST00000552720 EPS8Q12929 822 aa7.29□□□□□ -1.24
LIMA1-213ENST00000552720 BOP1Q14137 746 aaKnown RBP7.29□□□□□ -1.24
LIMA1-213ENST00000552720 PTCHD3Q3KNS1 767 aa7.29□□□□□ -1.24
LIMA1-213ENST00000552720 LRRC66Q68CR7 880 aa7.29□□□□□ -1.24
LIMA1-213ENST00000552720 ADNP2Q6IQ32 1131 aa7.29□□□□□ -1.24
LIMA1-213ENST00000552720 ZCCHC8Q6NZY4 707 aaKnown RBP7.29□□□□□ -1.24
LIMA1-213ENST00000552720 CRTC1Q6UUV9 634 aa7.29□□□□□ -1.24
LIMA1-213ENST00000552720 SERPINA13PQ6UXR4 307 aa7.29□□□□□ -1.24
LIMA1-213ENST00000552720 MACC1Q6ZN28 852 aa7.29□□□□□ -1.24
LIMA1-213ENST00000552720 Q6ZPB1 254 aaPredicted RBP7.29□□□□□ -1.24
LIMA1-213ENST00000552720 TMCO2Q7Z6W1 182 aaPredicted RBP7.29□□□□□ -1.24
LIMA1-213ENST00000552720 SLCO6A1Q86UG4 719 aa7.29□□□□□ -1.24
LIMA1-213ENST00000552720 NPAS4Q8IUM7 802 aa7.29□□□□□ -1.24
LIMA1-213ENST00000552720 CLECL1Q8IZS7 167 aa7.29□□□□□ -1.24
LIMA1-213ENST00000552720 TMEM132CQ8N3T6 1108 aa7.29□□□□□ -1.24
LIMA1-213ENST00000552720 PIK3C3Q8NEB9 887 aa7.29□□□□□ -1.24
LIMA1-213ENST00000552720 CHPT1Q8WUD6 406 aa7.29□□□□□ -1.24
LIMA1-213ENST00000552720 UBTD2Q8WUN7 234 aa7.29□□□□□ -1.24
LIMA1-213ENST00000552720 FOXJ1Q92949 421 aa7.29□□□□□ -1.24
LIMA1-213ENST00000552720 SH3GL1Q99961 368 aa7.29□□□□□ -1.24
LIMA1-213ENST00000552720 NEURL2Q9BR09 285 aa7.29□□□□□ -1.24
LIMA1-213ENST00000552720 HTATIP2Q9BUP3 242 aa7.29□□□□□ -1.24
LIMA1-213ENST00000552720 REXO4Q9GZR2 422 aaKnown RBP7.29□□□□□ -1.24
LIMA1-213ENST00000552720 ELOVL6Q9H5J4 265 aa7.29□□□□□ -1.24
LIMA1-213ENST00000552720 ZNF334Q9HCZ1 680 aaPredicted RBP7.29□□□□□ -1.24
LIMA1-213ENST00000552720 RASSF1Q9NS23 344 aa7.29□□□□□ -1.24
LIMA1-213ENST00000552720 THG1LQ9NWX6 298 aaKnown RBP7.29□□□□□ -1.24
LIMA1-213ENST00000552720 SIRT5Q9NXA8 310 aa7.29□□□□□ -1.24
LIMA1-213ENST00000552720 HECAQ9UBI9 543 aaPredicted RBP7.29□□□□□ -1.24
LIMA1-213ENST00000552720 INTS6Q9UL03 887 aaKnown RBP7.29□□□□□ -1.24
LIMA1-213ENST00000552720 BLOC1S6Q9UL45 172 aa7.29□□□□□ -1.24
LIMA1-213ENST00000552720 SLC22A14Q9Y267 594 aa7.29□□□□□ -1.24
LIMA1-213ENST00000552720 NAALAD2Q9Y3Q0 740 aa7.29□□□□□ -1.24
LIMA1-213ENST00000552720 PCDHGA10Q9Y5H3 936 aa7.29□□□□□ -1.24
LIMA1-213ENST00000552720 PMF1-BGLAPU3KQ54 211 aa7.29□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms