RNA–Protein interactions for RNA: ENST00000546378.1

HOXC11-202, Transcript of homeobox C11, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC11, Length 3,261 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11-202ENST00000546378 LIPAP38571 399 aa14.29□□□□□ -0.12
HOXC11-202ENST00000546378 SNRPD2P62316 118 aaKnown RBP14.29□□□□□ -0.12
HOXC11-202ENST00000546378 CD83Q01151 205 aa14.29□□□□□ -0.12
HOXC11-202ENST00000546378 SELENBP1Q13228 472 aa14.29□□□□□ -0.12
HOXC11-202ENST00000546378 CTF1Q16619 201 aa14.29□□□□□ -0.12
HOXC11-202ENST00000546378 C11orf96Q7Z7L8 435 aa14.29□□□□□ -0.12
HOXC11-202ENST00000546378 PROSER1Q86XN7 944 aa14.29□□□□□ -0.12
HOXC11-202ENST00000546378 CAMKK1Q8N5S9 505 aa14.29□□□□□ -0.12
HOXC11-202ENST00000546378 PACRGLQ8N7B6 248 aa14.29□□□□□ -0.12
HOXC11-202ENST00000546378 UHRF1Q96T88 793 aaPredicted RBP14.29□□□□□ -0.12
HOXC11-202ENST00000546378 CNPPD1Q9BV87 410 aa14.29□□□□□ -0.12
HOXC11-202ENST00000546378 TUBA8Q9NY65 449 aaPredicted RBP14.29□□□□□ -0.12
HOXC11-202ENST00000546378 SPATA7Q9P0W8 599 aa14.29□□□□□ -0.12
HOXC11-202ENST00000546378 MOSPD1Q9UJG1 213 aa14.29□□□□□ -0.12
HOXC11-202ENST00000546378 INTS6Q9UL03 887 aaKnown RBP14.29□□□□□ -0.12
HOXC11-202ENST00000546378 PRSS21Q9Y6M0 314 aa14.29□□□□□ -0.12
HOXC11-202ENST00000546378 WWP2O00308 870 aa14.28□□□□□ -0.12
HOXC11-202ENST00000546378 IFRD1O00458 451 aaPredicted RBP14.28□□□□□ -0.12
HOXC11-202ENST00000546378 E2F3O00716 465 aa14.28□□□□□ -0.12
HOXC11-202ENST00000546378 PFDN6O15212 129 aa14.28□□□□□ -0.12
HOXC11-202ENST00000546378 IDH3BO43837 385 aa14.28□□□□□ -0.12
HOXC11-202ENST00000546378 JRKO75564 520 aa14.28□□□□□ -0.12
HOXC11-202ENST00000546378 CDH12P55289 794 aa14.28□□□□□ -0.12
HOXC11-202ENST00000546378 TUSC3Q13454 348 aa14.28□□□□□ -0.12
HOXC11-202ENST00000546378 CCBE1Q6UXH8 406 aaPredicted RBP14.28□□□□□ -0.12
HOXC11-202ENST00000546378 PLEKHG7Q6ZR37 379 aa14.28□□□□□ -0.12
HOXC11-202ENST00000546378 GHDCQ8N2G8 530 aa14.28□□□□□ -0.12
HOXC11-202ENST00000546378 GFM1Q96RP9 751 aaKnown RBP14.28□□□□□ -0.12
HOXC11-202ENST00000546378 DSN1Q9H410 356 aa14.28□□□□□ -0.12
HOXC11-202ENST00000546378 TOR4AQ9NXH8 423 aa14.28□□□□□ -0.12
HOXC11-202ENST00000546378 SARDHQ9UL12 918 aa14.28□□□□□ -0.12
HOXC11-202ENST00000546378 GPSM3Q9Y4H4 160 aa14.28□□□□□ -0.12
HOXC11-202ENST00000546378 PCDHB7Q9Y5E2 793 aa14.28□□□□□ -0.12
HOXC11-202ENST00000546378 LRRTM2O43300 516 aa14.28□□□□□ -0.12
HOXC11-202ENST00000546378 CLDN7O95471 211 aa14.28□□□□□ -0.12
HOXC11-202ENST00000546378 STATHP02808 62 aa14.28□□□□□ -0.12
HOXC11-202ENST00000546378 SELPP16109 830 aa14.28□□□□□ -0.12
HOXC11-202ENST00000546378 GGT1P19440 569 aa14.28□□□□□ -0.12
HOXC11-202ENST00000546378 LPOP22079 712 aaPredicted RBP14.28□□□□□ -0.12
HOXC11-202ENST00000546378 KRT20P35900 424 aa14.28□□□□□ -0.12
HOXC11-202ENST00000546378 EEFSECP57772 596 aaKnown RBP14.28□□□□□ -0.12
HOXC11-202ENST00000546378 VLDLRP98155 873 aa14.28□□□□□ -0.12
HOXC11-202ENST00000546378 TLE2Q04725 743 aa14.28□□□□□ -0.12
HOXC11-202ENST00000546378 LRRC66Q68CR7 880 aa14.28□□□□□ -0.12
HOXC11-202ENST00000546378 ARMCX6Q7L4S7 300 aa14.28□□□□□ -0.12
HOXC11-202ENST00000546378 OR4K1Q8NGD4 311 aa14.28□□□□□ -0.12
HOXC11-202ENST00000546378 COPS8Q99627 209 aa14.28□□□□□ -0.12
HOXC11-202ENST00000546378 ACAT2Q9BWD1 397 aa14.28□□□□□ -0.12
HOXC11-202ENST00000546378 MMP28Q9H239 520 aa14.28□□□□□ -0.12
HOXC11-202ENST00000546378 TFB2MQ9H5Q4 396 aaKnown RBP14.28□□□□□ -0.12
HOXC11-202ENST00000546378 C11orf16Q9NQ32 467 aa14.28□□□□□ -0.12
HOXC11-202ENST00000546378 ENPP5Q9UJA9 477 aa14.28□□□□□ -0.12
HOXC11-202ENST00000546378 FAM92AA1XBS5 289 aa14.28□□□□□ -0.12
HOXC11-202ENST00000546378 LOC110117498-PIK3R3F6TDL0 507 aa14.28□□□□□ -0.12
HOXC11-202ENST00000546378 WDR47O94967 919 aa14.28□□□□□ -0.12
HOXC11-202ENST00000546378 NDST3O95803 873 aa14.28□□□□□ -0.12
HOXC11-202ENST00000546378 COX7A2P14406 83 aa14.28□□□□□ -0.12
HOXC11-202ENST00000546378 GSTM2P28161 218 aa14.28□□□□□ -0.12
HOXC11-202ENST00000546378 CD40LGP29965 261 aa14.28□□□□□ -0.12
HOXC11-202ENST00000546378 HNF4AP41235 474 aa14.28□□□□□ -0.12
HOXC11-202ENST00000546378 GNPDA1P46926 289 aa14.28□□□□□ -0.12
HOXC11-202ENST00000546378 ALDH7A1P49419 539 aaKnown RBP14.28□□□□□ -0.12
HOXC11-202ENST00000546378 RNASE12Q5GAN4 147 aaKnown RBP14.28□□□□□ -0.12
HOXC11-202ENST00000546378 SPATA19Q7Z5L4 167 aa14.28□□□□□ -0.12
HOXC11-202ENST00000546378 SERPINA9Q86WD7 417 aa14.28□□□□□ -0.12
HOXC11-202ENST00000546378 STARD8Q92502 1023 aa14.28□□□□□ -0.12
HOXC11-202ENST00000546378 TSGA13Q96PP4 275 aa14.28□□□□□ -0.12
HOXC11-202ENST00000546378 TRIT1Q9H3H1 467 aaKnown RBP14.28□□□□□ -0.12
HOXC11-202ENST00000546378 REEP1Q9H902 201 aa14.28□□□□□ -0.12
HOXC11-202ENST00000546378 WDR37Q9Y2I8 494 aa14.28□□□□□ -0.12
HOXC11-202ENST00000546378 TPRKBQ9Y3C4 175 aa14.28□□□□□ -0.12
HOXC11-202ENST00000546378 OR2AG2A6NM03 316 aa14.27□□□□□ -0.12
HOXC11-202ENST00000546378 SNX4O95219 450 aa14.27□□□□□ -0.12
HOXC11-202ENST00000546378 MZF1P28698 734 aaPredicted RBP14.27□□□□□ -0.12
HOXC11-202ENST00000546378 SCNN1AP37088 669 aa14.27□□□□□ -0.12
HOXC11-202ENST00000546378 POLD2P49005 469 aa14.27□□□□□ -0.12
HOXC11-202ENST00000546378 TIGD6Q17RP2 521 aa14.27□□□□□ -0.12
HOXC11-202ENST00000546378 SYT12Q8IV01 421 aa14.27□□□□□ -0.12
HOXC11-202ENST00000546378 STK40Q8N2I9 435 aa14.27□□□□□ -0.12
HOXC11-202ENST00000546378 CD200R1Q8TD46 325 aa14.27□□□□□ -0.12
HOXC11-202ENST00000546378 CENPOQ9BU64 300 aa14.27□□□□□ -0.12
HOXC11-202ENST00000546378 SNTG1Q9NSN8 517 aa14.27□□□□□ -0.12
HOXC11-202ENST00000546378 MED16Q9Y2X0 877 aa14.27□□□□□ -0.12
HOXC11-202ENST00000546378 TBKBP1A7MCY6 615 aa14.27□□□□□ -0.13
HOXC11-202ENST00000546378 TLL1O43897 1013 aa14.27□□□□□ -0.13
HOXC11-202ENST00000546378 FGF1P05230 155 aa14.27□□□□□ -0.13
HOXC11-202ENST00000546378 RPP38P78345 283 aaKnown RBP14.27□□□□□ -0.13
HOXC11-202ENST00000546378 ABRQ12979 859 aa14.27□□□□□ -0.13
HOXC11-202ENST00000546378 TRIM71Q2Q1W2 868 aaKnown RBP14.27□□□□□ -0.13
HOXC11-202ENST00000546378 USP39Q53GS9 565 aaKnown RBP14.27□□□□□ -0.13
HOXC11-202ENST00000546378 CLLU1OSQ5K130 101 aa14.27□□□□□ -0.13
HOXC11-202ENST00000546378 CTSL3PQ5NE16 218 aa14.27□□□□□ -0.13
HOXC11-202ENST00000546378 TPRG1LQ5T0D9 272 aa14.27□□□□□ -0.13
HOXC11-202ENST00000546378 ANKS3Q6ZW76 656 aa14.27□□□□□ -0.13
HOXC11-202ENST00000546378 ARMC8Q8IUR7 673 aa14.27□□□□□ -0.13
HOXC11-202ENST00000546378 TMEM86AQ8N2M4 240 aa14.27□□□□□ -0.13
HOXC11-202ENST00000546378 GTF2H4Q92759 462 aa14.27□□□□□ -0.13
HOXC11-202ENST00000546378 SH3KBP1Q96B97 665 aa14.27□□□□□ -0.13
HOXC11-202ENST00000546378 OSBPL10Q9BXB5 764 aa14.27□□□□□ -0.13
HOXC11-202ENST00000546378 SLC22A14Q9Y267 594 aa14.27□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms