RNA–Protein interactions for RNA: ENST00000542407.5

PDLIM5-221, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PDLIM5, Length 2,979 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-221ENST00000542407 TTC24A2A3L6 582 aaPredicted RBP7.8□□□□□ -1.16
PDLIM5-221ENST00000542407 PRORSD1PA6NEY8 169 aa7.8□□□□□ -1.16
PDLIM5-221ENST00000542407 NRG2O14511 850 aaPredicted RBP7.8□□□□□ -1.16
PDLIM5-221ENST00000542407 XYLBO75191 536 aa7.8□□□□□ -1.16
PDLIM5-221ENST00000542407 JUNP05412 331 aaKnown RBP7.8□□□□□ -1.16
PDLIM5-221ENST00000542407 ATXN1LP0C7T5 689 aaKnown RBP7.8□□□□□ -1.16
PDLIM5-221ENST00000542407 ELK4P28324 431 aa7.8□□□□□ -1.16
PDLIM5-221ENST00000542407 NOS3P29474 1203 aa7.8□□□□□ -1.16
PDLIM5-221ENST00000542407 CORO1AP31146 461 aaKnown RBP7.8□□□□□ -1.16
PDLIM5-221ENST00000542407 RAD52P43351 418 aa7.8□□□□□ -1.16
PDLIM5-221ENST00000542407 CDH4P55283 916 aa7.8□□□□□ -1.16
PDLIM5-221ENST00000542407 RPS24P62847 133 aaKnown RBP7.8□□□□□ -1.16
PDLIM5-221ENST00000542407 KCNAB2Q13303 367 aa7.8□□□□□ -1.16
PDLIM5-221ENST00000542407 ZIK1Q3SY52 487 aaPredicted RBP7.8□□□□□ -1.16
PDLIM5-221ENST00000542407 CCNJQ5T5M9 372 aa7.8□□□□□ -1.16
PDLIM5-221ENST00000542407 RSBN1Q5VWQ0 802 aaPredicted RBP7.8□□□□□ -1.16
PDLIM5-221ENST00000542407 FSTL4Q6MZW2 842 aa7.8□□□□□ -1.16
PDLIM5-221ENST00000542407 CRTC3Q6UUV7 619 aa7.8□□□□□ -1.16
PDLIM5-221ENST00000542407 PLEKHG7Q6ZR37 379 aa7.8□□□□□ -1.16
PDLIM5-221ENST00000542407 DNAJB7Q7Z6W7 309 aaPredicted RBP7.8□□□□□ -1.16
PDLIM5-221ENST00000542407 CLEC14AQ86T13 490 aa7.8□□□□□ -1.16
PDLIM5-221ENST00000542407 DHFR2Q86XF0 187 aa7.8□□□□□ -1.16
PDLIM5-221ENST00000542407 PLD6Q8N2A8 252 aaKnown RBP7.8□□□□□ -1.16
PDLIM5-221ENST00000542407 PARP8Q8N3A8 854 aa7.8□□□□□ -1.16
PDLIM5-221ENST00000542407 VANGL1Q8TAA9 524 aaPredicted RBP7.8□□□□□ -1.16
PDLIM5-221ENST00000542407 PABPC5Q96DU9 382 aaKnown RBP7.8□□□□□ -1.16
PDLIM5-221ENST00000542407 TBATAQ96M53 351 aa7.8□□□□□ -1.16
PDLIM5-221ENST00000542407 SLC22A12Q96S37 553 aa7.8□□□□□ -1.16
PDLIM5-221ENST00000542407 LHPPQ9H008 270 aa7.8□□□□□ -1.16
PDLIM5-221ENST00000542407 IL1RL2Q9HB29 575 aa7.8□□□□□ -1.16
PDLIM5-221ENST00000542407 ZDHHC4Q9NPG8 344 aa7.8□□□□□ -1.16
PDLIM5-221ENST00000542407 ABCB10Q9NRK6 738 aa7.8□□□□□ -1.16
PDLIM5-221ENST00000542407 DDX28Q9NUL7 540 aaKnown RBP7.8□□□□□ -1.16
PDLIM5-221ENST00000542407 TMEM9Q9P0T7 183 aa7.8□□□□□ -1.16
PDLIM5-221ENST00000542407 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP7.8□□□□□ -1.16
PDLIM5-221ENST00000542407 ACTL7AQ9Y615 435 aa7.8□□□□□ -1.16
PDLIM5-221ENST00000542407 ALPK3Q96L96 1907 aa7.8□□□□□ -1.16
PDLIM5-221ENST00000542407 LOC285095A0A1B0GVY8 99 aa7.8□□□□□ -1.16
PDLIM5-221ENST00000542407 TCAF2A6NFQ2 919 aa7.8□□□□□ -1.16
PDLIM5-221ENST00000542407 PCDH17O14917 1159 aa7.8□□□□□ -1.16
PDLIM5-221ENST00000542407 ALBP02768 609 aa7.8□□□□□ -1.16
PDLIM5-221ENST00000542407 RB1P06400 928 aa7.8□□□□□ -1.16
PDLIM5-221ENST00000542407 TGM1P22735 817 aa7.8□□□□□ -1.16
PDLIM5-221ENST00000542407 ALDH4A1P30038 563 aa7.8□□□□□ -1.16
PDLIM5-221ENST00000542407 PPP3CCP48454 512 aa7.8□□□□□ -1.16
PDLIM5-221ENST00000542407 SLC11A2P49281 568 aa7.8□□□□□ -1.16
PDLIM5-221ENST00000542407 RNF144AP50876 292 aaPredicted RBP7.8□□□□□ -1.16
PDLIM5-221ENST00000542407 TMBIM6P55061 237 aa7.8□□□□□ -1.16
PDLIM5-221ENST00000542407 CARD18P57730 90 aa7.8□□□□□ -1.16
PDLIM5-221ENST00000542407 GRSF1Q12849 480 aaKnown RBP eCLIP7.8□□□□□ -1.16
PDLIM5-221ENST00000542407 PLA2G4EQ3MJ16 856 aa7.8□□□□□ -1.16
PDLIM5-221ENST00000542407 DDX59Q5T1V6 619 aaKnown RBP eCLIP7.8□□□□□ -1.16
PDLIM5-221ENST00000542407 ESRP1Q6NXG1 681 aaKnown RBP7.8□□□□□ -1.16
PDLIM5-221ENST00000542407 SEZ6L2Q6UXD5 910 aa7.8□□□□□ -1.16
PDLIM5-221ENST00000542407 ZNF852Q6ZMS4 543 aa7.8□□□□□ -1.16
PDLIM5-221ENST00000542407 MFSD6LQ8IWD5 586 aa7.8□□□□□ -1.16
PDLIM5-221ENST00000542407 DHRSXQ8N5I4 330 aa7.8□□□□□ -1.16
PDLIM5-221ENST00000542407 AVL9Q8NBF6 648 aa7.8□□□□□ -1.16
PDLIM5-221ENST00000542407 OR13F1Q8NGS4 319 aa7.8□□□□□ -1.16
PDLIM5-221ENST00000542407 PSMA8Q8TAA3 256 aa7.8□□□□□ -1.16
PDLIM5-221ENST00000542407 RAB2BQ8WUD1 216 aa7.8□□□□□ -1.16
PDLIM5-221ENST00000542407 ZNF599Q96NL3 588 aa7.8□□□□□ -1.16
PDLIM5-221ENST00000542407 CDADC1Q9BWV3 514 aa7.8□□□□□ -1.16
PDLIM5-221ENST00000542407 EMILIN2Q9BXX0 1053 aa7.8□□□□□ -1.16
PDLIM5-221ENST00000542407 LRRC3Q9BY71 257 aa7.8□□□□□ -1.16
PDLIM5-221ENST00000542407 WDR12Q9GZL7 423 aaKnown RBP7.8□□□□□ -1.16
PDLIM5-221ENST00000542407 ING2Q9H160 280 aa7.8□□□□□ -1.16
PDLIM5-221ENST00000542407 MIR1-1HGQ9H1L0 117 aa7.8□□□□□ -1.16
PDLIM5-221ENST00000542407 ATXN3LQ9H3M9 355 aa7.8□□□□□ -1.16
PDLIM5-221ENST00000542407 IL23AQ9NPF7 189 aa7.8□□□□□ -1.16
PDLIM5-221ENST00000542407 SNX15Q9NRS6 342 aa7.8□□□□□ -1.16
PDLIM5-221ENST00000542407 FBXL21Q9UKT6 434 aa7.8□□□□□ -1.16
PDLIM5-221ENST00000542407 OAZ3Q9UMX2 235 aa7.8□□□□□ -1.16
PDLIM5-221ENST00000542407 ENTPD4Q9Y227 616 aa7.8□□□□□ -1.16
PDLIM5-221ENST00000542407 COPG1Q9Y678 874 aaKnown RBP7.8□□□□□ -1.16
PDLIM5-221ENST00000542407 HMX3A6NHT5 357 aa7.8□□□□□ -1.16
PDLIM5-221ENST00000542407 EI24O14681 340 aa7.8□□□□□ -1.16
PDLIM5-221ENST00000542407 NUPL2O15504 423 aaKnown RBP7.8□□□□□ -1.16
PDLIM5-221ENST00000542407 LZTS3O60299 673 aaPredicted RBP7.8□□□□□ -1.16
PDLIM5-221ENST00000542407 MAN1A2O60476 641 aa7.8□□□□□ -1.16
PDLIM5-221ENST00000542407 NOS1APO75052 506 aaPredicted RBP7.8□□□□□ -1.16
PDLIM5-221ENST00000542407 DEAF1O75398 565 aaPredicted RBP7.8□□□□□ -1.16
PDLIM5-221ENST00000542407 SCGB1D2O95969 90 aa7.8□□□□□ -1.16
PDLIM5-221ENST00000542407 MT-ND1P03886 318 aa7.8□□□□□ -1.16
PDLIM5-221ENST00000542407 KRT8P05787 483 aa7.8□□□□□ -1.16
PDLIM5-221ENST00000542407 CDH1P12830 882 aa7.8□□□□□ -1.16
PDLIM5-221ENST00000542407 COL9A1P20849 921 aa7.8□□□□□ -1.16
PDLIM5-221ENST00000542407 GALK2Q01415 458 aa7.8□□□□□ -1.16
PDLIM5-221ENST00000542407 PIGFQ07326 219 aa7.8□□□□□ -1.16
PDLIM5-221ENST00000542407 CXorf57Q6NSI4 855 aaKnown RBP7.8□□□□□ -1.16
PDLIM5-221ENST00000542407 Q6ZNB5 142 aa7.8□□□□□ -1.16
PDLIM5-221ENST00000542407 CHST9Q7L1S5 443 aa7.8□□□□□ -1.16
PDLIM5-221ENST00000542407 ZC3HC1Q86WB0 502 aaKnown RBP7.8□□□□□ -1.16
PDLIM5-221ENST00000542407 TMC8Q8IU68 726 aa7.8□□□□□ -1.16
PDLIM5-221ENST00000542407 TMEM199Q8N511 208 aa7.8□□□□□ -1.16
PDLIM5-221ENST00000542407 DNAJC5GQ8N7S2 189 aa7.8□□□□□ -1.16
PDLIM5-221ENST00000542407 POC1BQ8TC44 478 aa7.8□□□□□ -1.16
PDLIM5-221ENST00000542407 RELTQ969Z4 430 aa7.8□□□□□ -1.16
PDLIM5-221ENST00000542407 GPR22Q99680 433 aa7.8□□□□□ -1.16
PDLIM5-221ENST00000542407 GATA5Q9BWX5 397 aaPredicted RBP7.8□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms