RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 ZNF230Q9UIE0 474 aaPredicted RBP8.58□□□□□ -1.04
YBX3-208ENST00000540447 TMEM59LQ9UK28 342 aa8.58□□□□□ -1.04
YBX3-208ENST00000540447 SLC27A6Q9Y2P4 619 aa8.58□□□□□ -1.04
YBX3-208ENST00000540447 NME7Q9Y5B8 376 aa8.58□□□□□ -1.04
YBX3-208ENST00000540447 PCDHB5Q9Y5E4 795 aa8.58□□□□□ -1.04
YBX3-208ENST00000540447 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP8.57□□□□□ -1.04
YBX3-208ENST00000540447 POM121CA8CG34 1229 aa8.57□□□□□ -1.04
YBX3-208ENST00000540447 H7C1Q1 480 aa8.57□□□□□ -1.04
YBX3-208ENST00000540447 LCKP06239 509 aa8.57□□□□□ -1.04
YBX3-208ENST00000540447 UCHL1P09936 223 aa8.57□□□□□ -1.04
YBX3-208ENST00000540447 DNASE1L1P49184 302 aa8.57□□□□□ -1.04
YBX3-208ENST00000540447 ZNF132P52740 706 aa8.57□□□□□ -1.04
YBX3-208ENST00000540447 ZNF177Q13360 481 aaPredicted RBP8.57□□□□□ -1.04
YBX3-208ENST00000540447 BCL7AQ4VC05 210 aa8.57□□□□□ -1.04
YBX3-208ENST00000540447 ADAMTSL2Q86TH1 951 aa8.57□□□□□ -1.04
YBX3-208ENST00000540447 LGI4Q8N135 537 aa8.57□□□□□ -1.04
YBX3-208ENST00000540447 ST7LQ8TDW4 575 aa8.57□□□□□ -1.04
YBX3-208ENST00000540447 SLC13A3Q8WWT9 602 aa8.57□□□□□ -1.04
YBX3-208ENST00000540447 POLR2J3Q9H1A7 115 aaKnown RBP8.57□□□□□ -1.04
YBX3-208ENST00000540447 CCM2LQ9NUG4 571 aaPredicted RBP8.57□□□□□ -1.04
YBX3-208ENST00000540447 SLC1A7O00341 560 aa8.57□□□□□ -1.04
YBX3-208ENST00000540447 CYTIPO60759 359 aa8.57□□□□□ -1.04
YBX3-208ENST00000540447 TXNDC12O95881 172 aa8.57□□□□□ -1.04
YBX3-208ENST00000540447 TRBC1P01850 177 aa8.57□□□□□ -1.04
YBX3-208ENST00000540447 RD3LP0DJH9 198 aa8.57□□□□□ -1.04
YBX3-208ENST00000540447 FPR1P21462 350 aa8.57□□□□□ -1.04
YBX3-208ENST00000540447 RPL7AP62424 266 aaKnown RBP8.57□□□□□ -1.04
YBX3-208ENST00000540447 EN1Q05925 392 aaPredicted RBP8.57□□□□□ -1.04
YBX3-208ENST00000540447 PPP3CAQ08209 521 aa8.57□□□□□ -1.04
YBX3-208ENST00000540447 FLYWCH1Q4VC44 716 aa8.57□□□□□ -1.04
YBX3-208ENST00000540447 DCST2Q5T1A1 773 aa8.57□□□□□ -1.04
YBX3-208ENST00000540447 PCNPQ8WW12 178 aaKnown RBP8.57□□□□□ -1.04
YBX3-208ENST00000540447 CNOT9Q92600 299 aaKnown RBP8.57□□□□□ -1.04
YBX3-208ENST00000540447 SERPINB11Q96P15 392 aa8.57□□□□□ -1.04
YBX3-208ENST00000540447 COMMD4Q9H0A8 199 aa8.57□□□□□ -1.04
YBX3-208ENST00000540447 SCP2D1Q9UJQ7 156 aa8.57□□□□□ -1.04
YBX3-208ENST00000540447 CYP8B1Q9UNU6 501 aa8.57□□□□□ -1.04
YBX3-208ENST00000540447 GLYATL1P3A0A0U1RQE8 302 aa8.57□□□□□ -1.04
YBX3-208ENST00000540447 TFAP2AP05549 437 aa8.57□□□□□ -1.04
YBX3-208ENST00000540447 TKTL1P51854 596 aa8.57□□□□□ -1.04
YBX3-208ENST00000540447 ST3GAL4Q11206 333 aa8.57□□□□□ -1.04
YBX3-208ENST00000540447 GXYLT1Q4G148 440 aa8.57□□□□□ -1.04
YBX3-208ENST00000540447 ARL9Q6T311 187 aa8.57□□□□□ -1.04
YBX3-208ENST00000540447 NLRP8Q86W28 1048 aa8.57□□□□□ -1.04
YBX3-208ENST00000540447 CADM3Q8N126 398 aa8.57□□□□□ -1.04
YBX3-208ENST00000540447 LSMEM1Q8N8F7 131 aa8.57□□□□□ -1.04
YBX3-208ENST00000540447 GPER1Q99527 375 aa8.57□□□□□ -1.04
YBX3-208ENST00000540447 ZNF670Q9BS34 389 aa8.57□□□□□ -1.04
YBX3-208ENST00000540447 BRD9Q9H8M2 597 aa8.57□□□□□ -1.04
YBX3-208ENST00000540447 C19orf12Q9NSK7 152 aa8.57□□□□□ -1.04
YBX3-208ENST00000540447 LYPLA2O95372 231 aa8.57□□□□□ -1.04
YBX3-208ENST00000540447 PRKCHP24723 683 aa8.57□□□□□ -1.04
YBX3-208ENST00000540447 GMPSP49915 693 aaPredicted RBP8.57□□□□□ -1.04
YBX3-208ENST00000540447 TARDBPQ13148 414 aaKnown RBP eCLIP8.57□□□□□ -1.04
YBX3-208ENST00000540447 C10orf120Q5SQS8 335 aa8.57□□□□□ -1.04
YBX3-208ENST00000540447 FAM205BPQ63HN1 556 aa8.57□□□□□ -1.04
YBX3-208ENST00000540447 KIAA1161Q6NSJ0 714 aa8.57□□□□□ -1.04
YBX3-208ENST00000540447 SLC26A9Q7LBE3 791 aa8.57□□□□□ -1.04
YBX3-208ENST00000540447 HIST2H2ABQ8IUE6 130 aaPredicted RBP8.57□□□□□ -1.04
YBX3-208ENST00000540447 ACOT11Q8WXI4 607 aaPredicted RBP8.57□□□□□ -1.04
YBX3-208ENST00000540447 PPCDCQ96CD2 204 aa8.57□□□□□ -1.04
YBX3-208ENST00000540447 ZNF512BQ96KM6 892 aaPredicted RBP8.57□□□□□ -1.04
YBX3-208ENST00000540447 TBX5Q99593 518 aa8.57□□□□□ -1.04
YBX3-208ENST00000540447 SNRNP25Q9BV90 132 aaKnown RBP8.57□□□□□ -1.04
YBX3-208ENST00000540447 DNTTIP1Q9H147 329 aa8.57□□□□□ -1.04
YBX3-208ENST00000540447 CCNL1Q9UK58 526 aaPredicted RBP8.57□□□□□ -1.04
YBX3-208ENST00000540447 ARL5CA6NH57 179 aa8.57□□□□□ -1.04
YBX3-208ENST00000540447 UBFD1O14562 309 aaKnown RBP8.57□□□□□ -1.04
YBX3-208ENST00000540447 ODC1P11926 461 aa8.57□□□□□ -1.04
YBX3-208ENST00000540447 BRCC3P46736 316 aa8.57□□□□□ -1.04
YBX3-208ENST00000540447 SEC23BQ15437 767 aa8.57□□□□□ -1.04
YBX3-208ENST00000540447 FSTL4Q6MZW2 842 aa8.57□□□□□ -1.04
YBX3-208ENST00000540447 SLC51BQ86UW2 128 aa8.57□□□□□ -1.04
YBX3-208ENST00000540447 ATCAYQ86WG3 371 aa8.57□□□□□ -1.04
YBX3-208ENST00000540447 ZFP82Q8N141 532 aa8.57□□□□□ -1.04
YBX3-208ENST00000540447 SPATA22Q8NHS9 363 aa8.57□□□□□ -1.04
YBX3-208ENST00000540447 MFSD3Q96ES6 412 aa8.57□□□□□ -1.04
YBX3-208ENST00000540447 MAPKAP1Q9BPZ7 522 aa8.57□□□□□ -1.04
YBX3-208ENST00000540447 MCCC2Q9HCC0 563 aa8.57□□□□□ -1.04
YBX3-208ENST00000540447 TEX10Q9NXF1 929 aaPredicted RBP8.57□□□□□ -1.04
YBX3-208ENST00000540447 MS4A12Q9NXJ0 267 aa8.57□□□□□ -1.04
YBX3-208ENST00000540447 SLC27A5Q9Y2P5 690 aa8.57□□□□□ -1.04
YBX3-208ENST00000540447 DAGLAQ9Y4D2 1042 aa8.57□□□□□ -1.04
YBX3-208ENST00000540447 RFXAPO00287 272 aa8.56□□□□□ -1.04
YBX3-208ENST00000540447 AHSA1O95433 338 aa8.56□□□□□ -1.04
YBX3-208ENST00000540447 WEE1P30291 646 aa8.56□□□□□ -1.04
YBX3-208ENST00000540447 LEPRP48357 1165 aaKnown RBP8.56□□□□□ -1.04
YBX3-208ENST00000540447 RACK1P63244 317 aaKnown RBP8.56□□□□□ -1.04
YBX3-208ENST00000540447 LCP2Q13094 533 aa8.56□□□□□ -1.04
YBX3-208ENST00000540447 CRY2Q49AN0 593 aa8.56□□□□□ -1.04
YBX3-208ENST00000540447 RABL3Q5HYI8 236 aa8.56□□□□□ -1.04
YBX3-208ENST00000540447 UBAP2Q5T6F2 1119 aaKnown RBP8.56□□□□□ -1.04
YBX3-208ENST00000540447 FSTL5Q8N475 847 aaPredicted RBP8.56□□□□□ -1.04
YBX3-208ENST00000540447 PIGXQ8TBF5 258 aa8.56□□□□□ -1.04
YBX3-208ENST00000540447 BCL7CQ8WUZ0 217 aaPredicted RBP8.56□□□□□ -1.04
YBX3-208ENST00000540447 MAP6Q96JE9 813 aa8.56□□□□□ -1.04
YBX3-208ENST00000540447 OR10A4Q9H209 315 aa8.56□□□□□ -1.04
YBX3-208ENST00000540447 OR51J1Q9H342 316 aa8.56□□□□□ -1.04
YBX3-208ENST00000540447 FN3KQ9H479 309 aa8.56□□□□□ -1.04
YBX3-208ENST00000540447 ATP13A2Q9NQ11 1180 aa8.56□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms