RNA–Protein interactions for RNA: ENST00000540387.5

CTNNA1-243, Transcript of catenin alpha 1, humanhuman

TSL 1 (best) BASIC

Gene CTNNA1, Length 2,684 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNNA1-243ENST00000540387 PPP1R8Q12972 351 aaKnown RBP9.25□□□□□ -0.93
CTNNA1-243ENST00000540387 GRK1Q15835 563 aa9.25□□□□□ -0.93
CTNNA1-243ENST00000540387 DUOXA2Q1HG44 320 aa9.25□□□□□ -0.93
CTNNA1-243ENST00000540387 SPANXN3Q5MJ09 141 aa9.25□□□□□ -0.93
CTNNA1-243ENST00000540387 SH3PXD2AQ5TCZ1 1133 aa9.25□□□□□ -0.93
CTNNA1-243ENST00000540387 JADE1Q6IE81 842 aa9.25□□□□□ -0.93
CTNNA1-243ENST00000540387 SPESP1Q6UW49 350 aa9.25□□□□□ -0.93
CTNNA1-243ENST00000540387 PIWIL4Q7Z3Z4 852 aaKnown RBP9.25□□□□□ -0.93
CTNNA1-243ENST00000540387 CDKL3Q8IVW4 592 aaPredicted RBP9.25□□□□□ -0.93
CTNNA1-243ENST00000540387 FAM9CQ8IZT9 166 aa9.25□□□□□ -0.93
CTNNA1-243ENST00000540387 NLGN4YQ8NFZ3 816 aaPredicted RBP9.25□□□□□ -0.93
CTNNA1-243ENST00000540387 FOXJ1Q92949 421 aa9.25□□□□□ -0.93
CTNNA1-243ENST00000540387 RBPMSQ93062 196 aaKnown RBP9.25□□□□□ -0.93
CTNNA1-243ENST00000540387 COQ8BQ96D53 544 aa9.25□□□□□ -0.93
CTNNA1-243ENST00000540387 PDXPQ96GD0 296 aa9.25□□□□□ -0.93
CTNNA1-243ENST00000540387 SCLYQ96I15 445 aa9.25□□□□□ -0.93
CTNNA1-243ENST00000540387 VPS39Q96JC1 886 aa9.25□□□□□ -0.93
CTNNA1-243ENST00000540387 TMEM74Q96NL1 305 aa9.25□□□□□ -0.93
CTNNA1-243ENST00000540387 TOX2Q96NM4 488 aa9.25□□□□□ -0.93
CTNNA1-243ENST00000540387 TBCDQ9BTW9 1192 aa9.25□□□□□ -0.93
CTNNA1-243ENST00000540387 POMKQ9H5K3 350 aa9.25□□□□□ -0.93
CTNNA1-243ENST00000540387 C11orf49Q9H6J7 331 aa9.25□□□□□ -0.93
CTNNA1-243ENST00000540387 NIPSNAP3AQ9UFN0 247 aaPredicted RBP9.25□□□□□ -0.93
CTNNA1-243ENST00000540387 OAS3Q9Y6K5 1087 aaKnown RBP9.25□□□□□ -0.93
CTNNA1-243ENST00000540387 LINC00587B1AMM8 73 aa9.24□□□□□ -0.93
CTNNA1-243ENST00000540387 SYN3O14994 580 aa9.24□□□□□ -0.93
CTNNA1-243ENST00000540387 NBNO60934 754 aa9.24□□□□□ -0.93
CTNNA1-243ENST00000540387 FAM20BO75063 409 aa9.24□□□□□ -0.93
CTNNA1-243ENST00000540387 TRIM3O75382 744 aaPredicted RBP9.24□□□□□ -0.93
CTNNA1-243ENST00000540387 TULP3O75386 442 aa9.24□□□□□ -0.93
CTNNA1-243ENST00000540387 PMPCBO75439 489 aa9.24□□□□□ -0.93
CTNNA1-243ENST00000540387 RFPL3O75679 317 aa9.24□□□□□ -0.93
CTNNA1-243ENST00000540387 RECQL5O94762 991 aaPredicted RBP9.24□□□□□ -0.93
CTNNA1-243ENST00000540387 RPLP0P05388 317 aaKnown RBP9.24□□□□□ -0.93
CTNNA1-243ENST00000540387 RRASP10301 218 aa9.24□□□□□ -0.93
CTNNA1-243ENST00000540387 PPP3CCP48454 512 aa9.24□□□□□ -0.93
CTNNA1-243ENST00000540387 HOXA1P49639 335 aaPredicted RBP9.24□□□□□ -0.93
CTNNA1-243ENST00000540387 SURF1Q15526 300 aa9.24□□□□□ -0.93
CTNNA1-243ENST00000540387 KYAT1Q16773 422 aa9.24□□□□□ -0.93
CTNNA1-243ENST00000540387 TFAP2EQ6VUC0 442 aa9.24□□□□□ -0.93
CTNNA1-243ENST00000540387 CYHR1Q6ZMK1 362 aa9.24□□□□□ -0.93
CTNNA1-243ENST00000540387 RPS27LQ71UM5 84 aaKnown RBP9.24□□□□□ -0.93
CTNNA1-243ENST00000540387 RTN4RL1Q86UN2 441 aaPredicted RBP9.24□□□□□ -0.93
CTNNA1-243ENST00000540387 PROSER1Q86XN7 944 aa9.24□□□□□ -0.93
CTNNA1-243ENST00000540387 CCDC36Q8IYA8 594 aa9.24□□□□□ -0.93
CTNNA1-243ENST00000540387 CENPLQ8N0S6 344 aaPredicted RBP9.24□□□□□ -0.93
CTNNA1-243ENST00000540387 PCDH19Q8TAB3 1148 aa9.24□□□□□ -0.93
CTNNA1-243ENST00000540387 HYLS1Q96M11 299 aa9.24□□□□□ -0.93
CTNNA1-243ENST00000540387 SAMD11Q96NU1 681 aa9.24□□□□□ -0.93
CTNNA1-243ENST00000540387 MCCC1Q96RQ3 725 aaPredicted RBP9.24□□□□□ -0.93
CTNNA1-243ENST00000540387 PIP5K1AQ99755 562 aa9.24□□□□□ -0.93
CTNNA1-243ENST00000540387 ADAM2Q99965 735 aa9.24□□□□□ -0.93
CTNNA1-243ENST00000540387 C11orf54Q9H0W9 315 aaPredicted RBP9.24□□□□□ -0.93
CTNNA1-243ENST00000540387 ELOVL6Q9H5J4 265 aa9.24□□□□□ -0.93
CTNNA1-243ENST00000540387 ASB7Q9H672 318 aa9.24□□□□□ -0.93
CTNNA1-243ENST00000540387 ASAH2Q9NR71 780 aa9.24□□□□□ -0.93
CTNNA1-243ENST00000540387 EVLQ9UI08 416 aaPredicted RBP9.24□□□□□ -0.93
CTNNA1-243ENST00000540387 SSUH2Q9Y2M2 353 aa9.24□□□□□ -0.93
CTNNA1-243ENST00000540387 PCDHB5Q9Y5E4 795 aa9.24□□□□□ -0.93
CTNNA1-243ENST00000540387 GMPPBQ9Y5P6 360 aa9.24□□□□□ -0.93
CTNNA1-243ENST00000540387 TRAV20A0A0B4J274 112 aa9.24□□□□□ -0.93
CTNNA1-243ENST00000540387 NEMP2A6NFY4 417 aa9.24□□□□□ -0.93
CTNNA1-243ENST00000540387 ASS1P00966 412 aaKnown RBP9.24□□□□□ -0.93
CTNNA1-243ENST00000540387 SDC4P31431 198 aa9.24□□□□□ -0.93
CTNNA1-243ENST00000540387 SOX6P35712 828 aa9.24□□□□□ -0.93
CTNNA1-243ENST00000540387 DGKQP52824 942 aa9.24□□□□□ -0.93
CTNNA1-243ENST00000540387 OR4D2P58180 307 aa9.24□□□□□ -0.93
CTNNA1-243ENST00000540387 CXCR4P61073 352 aa9.24□□□□□ -0.93
CTNNA1-243ENST00000540387 ERVK-8P63133 956 aa9.24□□□□□ -0.93
CTNNA1-243ENST00000540387 CHRNB3Q05901 458 aa9.24□□□□□ -0.93
CTNNA1-243ENST00000540387 ASAH1Q13510 395 aa9.24□□□□□ -0.93
CTNNA1-243ENST00000540387 NFYCQ13952 458 aa9.24□□□□□ -0.93
CTNNA1-243ENST00000540387 QPRTQ15274 297 aa9.24□□□□□ -0.93
CTNNA1-243ENST00000540387 LTB4RQ15722 352 aa9.24□□□□□ -0.93
CTNNA1-243ENST00000540387 GPR19Q15760 415 aa9.24□□□□□ -0.93
CTNNA1-243ENST00000540387 TATDN3Q17R31 274 aa9.24□□□□□ -0.93
CTNNA1-243ENST00000540387 FLYWCH1Q4VC44 716 aa9.24□□□□□ -0.93
CTNNA1-243ENST00000540387 C4orf46Q504U0 113 aa9.24□□□□□ -0.93
CTNNA1-243ENST00000540387 FAM98BQ52LJ0 330 aaKnown RBP9.24□□□□□ -0.93
CTNNA1-243ENST00000540387 C1orf53Q5VUE5 145 aa9.24□□□□□ -0.93
CTNNA1-243ENST00000540387 ZC3HC1Q86WB0 502 aaKnown RBP9.24□□□□□ -0.93
CTNNA1-243ENST00000540387 NT5DC4Q86YG4 428 aa9.24□□□□□ -0.93
CTNNA1-243ENST00000540387 KCT2Q8NC54 265 aa9.24□□□□□ -0.93
CTNNA1-243ENST00000540387 TFAP2BQ92481 460 aa9.24□□□□□ -0.93
CTNNA1-243ENST00000540387 LPPQ93052 612 aa9.24□□□□□ -0.93
CTNNA1-243ENST00000540387 ZNF669Q96BR6 464 aaPredicted RBP9.24□□□□□ -0.93
CTNNA1-243ENST00000540387 AHCYL2Q96HN2 611 aaKnown RBP9.24□□□□□ -0.93
CTNNA1-243ENST00000540387 SHARPINQ9H0F6 387 aa9.24□□□□□ -0.93
CTNNA1-243ENST00000540387 OR51E2Q9H255 320 aa9.24□□□□□ -0.93
CTNNA1-243ENST00000540387 CCNB1IP1Q9NPC3 277 aa9.24□□□□□ -0.93
CTNNA1-243ENST00000540387 GPATCH2LQ9NWQ4 482 aa9.24□□□□□ -0.93
CTNNA1-243ENST00000540387 PCOLCE2Q9UKZ9 415 aa9.24□□□□□ -0.93
CTNNA1-243ENST00000540387 TNPO3Q9Y5L0 923 aaKnown RBP9.24□□□□□ -0.93
CTNNA1-243ENST00000540387 ALG5Q9Y673 324 aa9.24□□□□□ -0.93
CTNNA1-243ENST00000540387 TP53BP1Q12888 1972 aaPredicted RBP9.23□□□□□ -0.93
CTNNA1-243ENST00000540387 PITPNM1O00562 1244 aa9.23□□□□□ -0.93
CTNNA1-243ENST00000540387 STAU1O95793 577 aaKnown RBP9.23□□□□□ -0.93
CTNNA1-243ENST00000540387 CPN2P22792 545 aa9.23□□□□□ -0.93
CTNNA1-243ENST00000540387 HTR1EP28566 365 aa9.23□□□□□ -0.93
CTNNA1-243ENST00000540387 KIR2DL3P43628 341 aa9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms