RNA–Protein interactions for RNA: ENST00000533079.5

CAPN1-223, Transcript of calpain 1, human

TSL 3

Gene CAPN1, Length 878 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CAPN1-223	ENST00000533079	FTH1	P02794	183 aa		11.88	□□□□□ -0.51
CAPN1-223	ENST00000533079	SERPINA7	P05543	415 aa		11.88	□□□□□ -0.51
CAPN1-223	ENST00000533079	TCP1	P17987	556 aa	Known RBP	11.88	□□□□□ -0.51
CAPN1-223	ENST00000533079	MST1	P26927	711 aa		11.88	□□□□□ -0.51
CAPN1-223	ENST00000533079	ACADL	P28330	430 aa		11.88	□□□□□ -0.51
CAPN1-223	ENST00000533079	PEBP1	P30086	187 aa	Known RBP	11.88	□□□□□ -0.51
CAPN1-223	ENST00000533079	OCA2	Q04671	838 aa		11.88	□□□□□ -0.51
CAPN1-223	ENST00000533079	TLE4	Q04727	773 aa		11.88	□□□□□ -0.51
CAPN1-223	ENST00000533079	KLC1	Q07866	573 aa		11.88	□□□□□ -0.51
CAPN1-223	ENST00000533079	LONRF1	Q17RB8	773 aa		11.88	□□□□□ -0.51
CAPN1-223	ENST00000533079	ATG9B	Q674R7	924 aa		11.88	□□□□□ -0.51
CAPN1-223	ENST00000533079	FAAH2	Q6GMR7	532 aa		11.88	□□□□□ -0.51
CAPN1-223	ENST00000533079	CNST	Q6PJW8	725 aa		11.88	□□□□□ -0.51
CAPN1-223	ENST00000533079	SHISA6	Q6ZSJ9	500 aa		11.88	□□□□□ -0.51
CAPN1-223	ENST00000533079	NDUFAF7	Q7L592	441 aa		11.88	□□□□□ -0.51
CAPN1-223	ENST00000533079	MCAT	Q8IVS2	390 aa	Known RBP	11.88	□□□□□ -0.51
CAPN1-223	ENST00000533079	RHOT2	Q8IXI1	618 aa		11.88	□□□□□ -0.51
CAPN1-223	ENST00000533079	FAM20C	Q8IXL6	584 aa		11.88	□□□□□ -0.51
CAPN1-223	ENST00000533079	SYCE1	Q8N0S2	351 aa		11.88	□□□□□ -0.51
CAPN1-223	ENST00000533079	ACBD4	Q8NC06	268 aa		11.88	□□□□□ -0.51
CAPN1-223	ENST00000533079	MNS1	Q8NEH6	495 aa		11.88	□□□□□ -0.51
CAPN1-223	ENST00000533079	BRIX1	Q8TDN6	353 aa	Known RBP	11.88	□□□□□ -0.51
CAPN1-223	ENST00000533079	PSMF1	Q92530	271 aa		11.88	□□□□□ -0.51
CAPN1-223	ENST00000533079	MIEF2	Q96C03	454 aa		11.88	□□□□□ -0.51
CAPN1-223	ENST00000533079	ZNF285	Q96NJ3	590 aa		11.88	□□□□□ -0.51
CAPN1-223	ENST00000533079	QKI	Q96PU8	341 aa	Known RBP eCLIP	11.88	□□□□□ -0.51	6e-6	■■■■□ 20.5
CAPN1-223	ENST00000533079	PACSIN1	Q9BY11	444 aa		11.88	□□□□□ -0.51
CAPN1-223	ENST00000533079	ENKD1	Q9H0I2	346 aa		11.88	□□□□□ -0.51
CAPN1-223	ENST00000533079	CSTF2T	Q9H0L4	616 aa	Known RBP eCLIP	11.88	□□□□□ -0.51
CAPN1-223	ENST00000533079	RIC8B	Q9NVN3	520 aa		11.88	□□□□□ -0.51
CAPN1-223	ENST00000533079	ZNF282	Q9UDV7	671 aa	Predicted RBP	11.88	□□□□□ -0.51
CAPN1-223	ENST00000533079	FEZ2	Q9UHY8	353 aa	Predicted RBP	11.88	□□□□□ -0.51
CAPN1-223	ENST00000533079	SH3BGRL2	Q9UJC5	107 aa		11.88	□□□□□ -0.51
CAPN1-223	ENST00000533079	SNX12	Q9UMY4	172 aa		11.88	□□□□□ -0.51
CAPN1-223	ENST00000533079	TDRKH	Q9Y2W6	561 aa	Known RBP	11.88	□□□□□ -0.51
CAPN1-223	ENST00000533079	CCDC168	Q8NDH2	2452 aa		11.88	□□□□□ -0.51
CAPN1-223	ENST00000533079	DOCK10	Q96BY6	2186 aa		11.88	□□□□□ -0.51
CAPN1-223	ENST00000533079	OR5H15	A6NDH6	313 aa		11.87	□□□□□ -0.51
CAPN1-223	ENST00000533079	C19orf84	I3L1E1	186 aa		11.87	□□□□□ -0.51
CAPN1-223	ENST00000533079	PRAMEF2	O60811	474 aa		11.87	□□□□□ -0.51
CAPN1-223	ENST00000533079	AGT	P01019	485 aa		11.87	□□□□□ -0.51
CAPN1-223	ENST00000533079	RPN2	P04844	631 aa		11.87	□□□□□ -0.51
CAPN1-223	ENST00000533079	COX6A1	P12074	109 aa		11.87	□□□□□ -0.51
CAPN1-223	ENST00000533079	PKLR	P30613	574 aa		11.87	□□□□□ -0.51
CAPN1-223	ENST00000533079	MC4R	P32245	332 aa		11.87	□□□□□ -0.51
CAPN1-223	ENST00000533079	MESD	Q14696	234 aa		11.87	□□□□□ -0.51
CAPN1-223	ENST00000533079	MEI1	Q5TIA1	1274 aa		11.87	□□□□□ -0.51
CAPN1-223	ENST00000533079	ITPRIPL1	Q6GPH6	555 aa		11.87	□□□□□ -0.51
CAPN1-223	ENST00000533079	HIBCH	Q6NVY1	386 aa	Predicted RBP	11.87	□□□□□ -0.51
CAPN1-223	ENST00000533079	RANBP10	Q6VN20	620 aa		11.87	□□□□□ -0.51
CAPN1-223	ENST00000533079		Q6ZPB1	254 aa	Predicted RBP	11.87	□□□□□ -0.51
CAPN1-223	ENST00000533079	ZNF572	Q7Z3I7	529 aa	Predicted RBP	11.87	□□□□□ -0.51
CAPN1-223	ENST00000533079	EID3	Q8N140	333 aa		11.87	□□□□□ -0.51
CAPN1-223	ENST00000533079	LRRC57	Q8N9N7	239 aa		11.87	□□□□□ -0.51
CAPN1-223	ENST00000533079	SERBP1	Q8NC51	408 aa	Known RBP eCLIP	11.87	□□□□□ -0.51
CAPN1-223	ENST00000533079	OR13C4	Q8NGS5	318 aa		11.87	□□□□□ -0.51
CAPN1-223	ENST00000533079	STT3B	Q8TCJ2	826 aa		11.87	□□□□□ -0.51
CAPN1-223	ENST00000533079	THAP3	Q8WTV1	239 aa	Predicted RBP	11.87	□□□□□ -0.51
CAPN1-223	ENST00000533079	PHF10	Q8WUB8	498 aa	Known RBP	11.87	□□□□□ -0.51
CAPN1-223	ENST00000533079	P3H4	Q92791	437 aa		11.87	□□□□□ -0.51
CAPN1-223	ENST00000533079	PPP1R2P1	Q96PQ5	205 aa		11.87	□□□□□ -0.51
CAPN1-223	ENST00000533079	TREX2	Q9BQ50	279 aa	Predicted RBP	11.87	□□□□□ -0.51
CAPN1-223	ENST00000533079	ZNF304	Q9HCX3	659 aa		11.87	□□□□□ -0.51
CAPN1-223	ENST00000533079	C3orf18	Q9UK00	162 aa		11.87	□□□□□ -0.51
CAPN1-223	ENST00000533079	ZNF835	Q9Y2P0	537 aa		11.87	□□□□□ -0.51
CAPN1-223	ENST00000533079	AAR2	Q9Y312	384 aa	Known RBP	11.87	□□□□□ -0.51
CAPN1-223	ENST00000533079	PCDHGB6	Q9Y5F9	930 aa		11.87	□□□□□ -0.51
CAPN1-223	ENST00000533079	CAPN6	Q9Y6Q1	641 aa		11.87	□□□□□ -0.51
CAPN1-223	ENST00000533079	FAM169A	Q9Y6X4	670 aa		11.87	□□□□□ -0.51
CAPN1-223	ENST00000533079	CCDC88C	Q9P219	2028 aa		11.87	□□□□□ -0.51
CAPN1-223	ENST00000533079	ZGRF1	Q86YA3	2104 aa		11.87	□□□□□ -0.51
CAPN1-223	ENST00000533079	NCOA6	Q14686	2063 aa	Predicted RBP	11.87	□□□□□ -0.51
CAPN1-223	ENST00000533079	MED13L	Q71F56	2210 aa		11.86	□□□□□ -0.51
CAPN1-223	ENST00000533079	IGLV3-12	A0A075B6K2	115 aa		11.86	□□□□□ -0.51
CAPN1-223	ENST00000533079	IGHV1-45	A0A0A0MS14	117 aa		11.86	□□□□□ -0.51
CAPN1-223	ENST00000533079	FAM221A	A4D161	298 aa		11.86	□□□□□ -0.51
CAPN1-223	ENST00000533079	PRPF4	O43172	522 aa	Known RBP eCLIP	11.86	□□□□□ -0.51
CAPN1-223	ENST00000533079	SRPX2	O60687	465 aa	Predicted RBP	11.86	□□□□□ -0.51
CAPN1-223	ENST00000533079	ZRANB2	O95218	330 aa	Known RBP eCLIP	11.86	□□□□□ -0.51
CAPN1-223	ENST00000533079	TUBB	P07437	444 aa		11.86	□□□□□ -0.51
CAPN1-223	ENST00000533079	ZGLP1	P0C6A0	271 aa		11.86	□□□□□ -0.51
CAPN1-223	ENST00000533079	TPBGL	P0DKB5	382 aa		11.86	□□□□□ -0.51
CAPN1-223	ENST00000533079	ICAM2	P13598	275 aa		11.86	□□□□□ -0.51
CAPN1-223	ENST00000533079	PECAM1	P16284	738 aa	Predicted RBP	11.86	□□□□□ -0.51
CAPN1-223	ENST00000533079	CXCR2	P25025	360 aa		11.86	□□□□□ -0.51
CAPN1-223	ENST00000533079	ADRA1A	P35348	466 aa		11.86	□□□□□ -0.51
CAPN1-223	ENST00000533079	CDKN2B	P42772	138 aa		11.86	□□□□□ -0.51
CAPN1-223	ENST00000533079	SLC1A1	P43005	524 aa		11.86	□□□□□ -0.51
CAPN1-223	ENST00000533079	KIR3DL1	P43629	444 aa		11.86	□□□□□ -0.51
CAPN1-223	ENST00000533079	KRTAP10-9	P60411	292 aa		11.86	□□□□□ -0.51
CAPN1-223	ENST00000533079	C3AR1	Q16581	482 aa		11.86	□□□□□ -0.51
CAPN1-223	ENST00000533079	TAZ	Q16635	292 aa		11.86	□□□□□ -0.51
CAPN1-223	ENST00000533079	SYTL3	Q4VX76	610 aa		11.86	□□□□□ -0.51
CAPN1-223	ENST00000533079	PACS1	Q6VY07	963 aa		11.86	□□□□□ -0.51
CAPN1-223	ENST00000533079	SERPINA9	Q86WD7	417 aa		11.86	□□□□□ -0.51
CAPN1-223	ENST00000533079	SIRT6	Q8N6T7	355 aa		11.86	□□□□□ -0.51
CAPN1-223	ENST00000533079	ZDHHC19	Q8WVZ1	309 aa	Predicted RBP	11.86	□□□□□ -0.51
CAPN1-223	ENST00000533079	RNF25	Q96BH1	459 aa	Predicted RBP	11.86	□□□□□ -0.51
CAPN1-223	ENST00000533079	LRRC45	Q96CN5	670 aa		11.86	□□□□□ -0.51
CAPN1-223	ENST00000533079	SELENOS	Q9BQE4	189 aa		11.86	□□□□□ -0.51

Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms