RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 KIR3DX1Q9H7L2 352 aa20.35■□□□□ 0.85
VPS28-208ENST00000527797 TAAR2Q9P1P5 351 aa20.35■□□□□ 0.85
VPS28-208ENST00000527797 CAPN14A8MX76 684 aa20.34■□□□□ 0.85
VPS28-208ENST00000527797 PRR5-ARHGAP8B1AHC4 643 aa20.34■□□□□ 0.85
VPS28-208ENST00000527797 ATP5HO75947 161 aa20.34■□□□□ 0.85
VPS28-208ENST00000527797 CSF2P04141 144 aa20.34■□□□□ 0.85
VPS28-208ENST00000527797 LBPP18428 481 aa20.34■□□□□ 0.85
VPS28-208ENST00000527797 HNF4AP41235 474 aa20.34■□□□□ 0.85
VPS28-208ENST00000527797 CASP2P42575 452 aa20.34■□□□□ 0.85
VPS28-208ENST00000527797 RAB28P51157 221 aa20.34■□□□□ 0.85
VPS28-208ENST00000527797 ZRSR2Q15696 482 aaKnown RBP20.34■□□□□ 0.85
VPS28-208ENST00000527797 SPRED3Q2MJR0 410 aa20.34■□□□□ 0.85
VPS28-208ENST00000527797 IYDQ6PHW0 289 aa20.34■□□□□ 0.85
VPS28-208ENST00000527797 C11orf74Q86VG3 221 aa20.34■□□□□ 0.85
VPS28-208ENST00000527797 PTCD3Q96EY7 689 aaKnown RBP20.34■□□□□ 0.85
VPS28-208ENST00000527797 PCBD2Q9H0N5 130 aa20.34■□□□□ 0.85
VPS28-208ENST00000527797 ELOVL6Q9H5J4 265 aa20.34■□□□□ 0.85
VPS28-208ENST00000527797 TXLNGQ9NUQ3 528 aa20.34■□□□□ 0.85
VPS28-208ENST00000527797 MRGBPQ9NV56 204 aa20.34■□□□□ 0.85
VPS28-208ENST00000527797 ZNF624Q9P2J8 865 aaPredicted RBP20.34■□□□□ 0.85
VPS28-208ENST00000527797 ZNF490Q9ULM2 529 aaPredicted RBP20.34■□□□□ 0.85
VPS28-208ENST00000527797 SLC12A4Q9UP95 1085 aa20.34■□□□□ 0.85
VPS28-208ENST00000527797 PLXND1Q9Y4D7 1925 aa20.33■□□□□ 0.85
VPS28-208ENST00000527797 SLC28A1O00337 649 aa20.33■□□□□ 0.84
VPS28-208ENST00000527797 VILLO15195 856 aa20.33■□□□□ 0.84
VPS28-208ENST00000527797 BCAT2O15382 392 aaPredicted RBP20.33■□□□□ 0.84
VPS28-208ENST00000527797 CBX6O95503 412 aa20.33■□□□□ 0.84
VPS28-208ENST00000527797 PKLRP30613 574 aa20.33■□□□□ 0.84
VPS28-208ENST00000527797 NXPH1P58417 271 aa20.33■□□□□ 0.84
VPS28-208ENST00000527797 SGO1Q5FBB7 561 aa20.33■□□□□ 0.84
VPS28-208ENST00000527797 PRRT3Q5FWE3 981 aa20.33■□□□□ 0.84
VPS28-208ENST00000527797 GRHL2Q6ISB3 625 aa20.33■□□□□ 0.84
VPS28-208ENST00000527797 SLCO4C1Q6ZQN7 724 aa20.33■□□□□ 0.84
VPS28-208ENST00000527797 OR2L8Q8NGY9 312 aa20.33■□□□□ 0.84
VPS28-208ENST00000527797 USP7Q93009 1102 aa20.33■□□□□ 0.84
VPS28-208ENST00000527797 NSL1Q96IY1 281 aa20.33■□□□□ 0.84
VPS28-208ENST00000527797 XKR8Q9H6D3 395 aa20.33■□□□□ 0.84
VPS28-208ENST00000527797 CAAP1Q9H8G2 361 aa20.33■□□□□ 0.84
VPS28-208ENST00000527797 ARL8BQ9NVJ2 186 aa20.33■□□□□ 0.84
VPS28-208ENST00000527797 CAPN7Q9Y6W3 813 aa20.33■□□□□ 0.84
VPS28-208ENST00000527797 TRBV23OR9-2A0A075B6M9 112 aa20.32■□□□□ 0.84
VPS28-208ENST00000527797 PRAMEF33A0A0G2JMD5 474 aa20.32■□□□□ 0.84
VPS28-208ENST00000527797 RGS14O43566 566 aa20.32■□□□□ 0.84
VPS28-208ENST00000527797 PEX11AO75192 247 aa20.32■□□□□ 0.84
VPS28-208ENST00000527797 SLC2A4P14672 509 aa20.32■□□□□ 0.84
VPS28-208ENST00000527797 NME1P15531 152 aaKnown RBP20.32■□□□□ 0.84
VPS28-208ENST00000527797 ADSLP30566 484 aaPredicted RBP20.32■□□□□ 0.84
VPS28-208ENST00000527797 SLC19A1P41440 591 aa20.32■□□□□ 0.84
VPS28-208ENST00000527797 C21orf59P57076 290 aa20.32■□□□□ 0.84
VPS28-208ENST00000527797 C1orf61Q13536 156 aa20.32■□□□□ 0.84
VPS28-208ENST00000527797 Q6ZSR9 355 aa20.32■□□□□ 0.84
VPS28-208ENST00000527797 TREML1Q86YW5 311 aa20.32■□□□□ 0.84
VPS28-208ENST00000527797 PHF6Q8IWS0 365 aaKnown RBP eCLIP20.32■□□□□ 0.84
VPS28-208ENST00000527797 MAML2Q8IZL2 1156 aaPredicted RBP20.32■□□□□ 0.84
VPS28-208ENST00000527797 OR2T11Q8NH01 316 aa20.32■□□□□ 0.84
VPS28-208ENST00000527797 HMGCLL1Q8TB92 370 aa20.32■□□□□ 0.84
VPS28-208ENST00000527797 SLC5A11Q8WWX8 675 aa20.32■□□□□ 0.84
VPS28-208ENST00000527797 SELENOMQ8WWX9 145 aa20.32■□□□□ 0.84
VPS28-208ENST00000527797 NRTNQ99748 197 aa20.32■□□□□ 0.84
VPS28-208ENST00000527797 EHD1Q9H4M9 534 aa20.32■□□□□ 0.84
VPS28-208ENST00000527797 ZNF385DQ9H6B1 395 aa20.32■□□□□ 0.84
VPS28-208ENST00000527797 FARSBQ9NSD9 589 aaKnown RBP20.32■□□□□ 0.84
VPS28-208ENST00000527797 OR5K4A6NMS3 321 aa20.31■□□□□ 0.84
VPS28-208ENST00000527797 SLC22A2O15244 555 aa20.31■□□□□ 0.84
VPS28-208ENST00000527797 UNC5CO95185 931 aa20.31■□□□□ 0.84
VPS28-208ENST00000527797 CELA2BP08218 269 aaPredicted RBP20.31■□□□□ 0.84
VPS28-208ENST00000527797 PRR35P0CG20 571 aa20.31■□□□□ 0.84
VPS28-208ENST00000527797 C1GALT1C1LP0DN25 315 aa20.31■□□□□ 0.84
VPS28-208ENST00000527797 T-ENOLP0DO92 83 aa20.31■□□□□ 0.84
VPS28-208ENST00000527797 CD22P20273 847 aa20.31■□□□□ 0.84
VPS28-208ENST00000527797 CSNK1EP49674 416 aaKnown RBP20.31■□□□□ 0.84
VPS28-208ENST00000527797 AFF3P51826 1226 aaKnown RBP20.31■□□□□ 0.84
VPS28-208ENST00000527797 KLF10Q13118 480 aa20.31■□□□□ 0.84
VPS28-208ENST00000527797 E2F2Q14209 437 aa20.31■□□□□ 0.84
VPS28-208ENST00000527797 ELOCQ15369 112 aa20.31■□□□□ 0.84
VPS28-208ENST00000527797 ATP6AP1LQ52LC2 224 aa20.31■□□□□ 0.84
VPS28-208ENST00000527797 ATG9BQ674R7 924 aa20.31■□□□□ 0.84
VPS28-208ENST00000527797 OGFOD2Q6N063 350 aa20.31■□□□□ 0.84
VPS28-208ENST00000527797 NXPE4Q6UWF7 544 aa20.31■□□□□ 0.84
VPS28-208ENST00000527797 TRIM46Q7Z4K8 759 aa20.31■□□□□ 0.84
VPS28-208ENST00000527797 SPATA19Q7Z5L4 167 aa20.31■□□□□ 0.84
VPS28-208ENST00000527797 TMPRSS11BQ86T26 416 aa20.31■□□□□ 0.84
VPS28-208ENST00000527797 TMEM105Q8N8V8 129 aa20.31■□□□□ 0.84
VPS28-208ENST00000527797 LINC01555Q8NAE3 123 aa20.31■□□□□ 0.84
VPS28-208ENST00000527797 GAB3Q8WWW8 586 aa20.31■□□□□ 0.84
VPS28-208ENST00000527797 MTFMTQ96DP5 389 aaKnown RBP20.31■□□□□ 0.84
VPS28-208ENST00000527797 WDR34Q96EX3 536 aa20.31■□□□□ 0.84
VPS28-208ENST00000527797 MARK4Q96L34 752 aa20.31■□□□□ 0.84
VPS28-208ENST00000527797 HBEGFQ99075 208 aa20.31■□□□□ 0.84
VPS28-208ENST00000527797 EFCAB11Q9BUY7 163 aa20.31■□□□□ 0.84
VPS28-208ENST00000527797 LRRC61Q9BV99 259 aa20.31■□□□□ 0.84
VPS28-208ENST00000527797 ACTR5Q9H9F9 607 aaPredicted RBP20.31■□□□□ 0.84
VPS28-208ENST00000527797 GIMAP2Q9UG22 337 aa20.31■□□□□ 0.84
VPS28-208ENST00000527797 TAC3Q9UHF0 121 aa20.31■□□□□ 0.84
VPS28-208ENST00000527797 ICKQ9UPZ9 632 aa20.31■□□□□ 0.84
VPS28-208ENST00000527797 COPG1Q9Y678 874 aaKnown RBP20.31■□□□□ 0.84
VPS28-208ENST00000527797 KIR2DS5A0A0G2JLQ3 304 aa20.31■□□□□ 0.84
VPS28-208ENST00000527797 A0A0G2JNG1 304 aa20.31■□□□□ 0.84
VPS28-208ENST00000527797 H0YIV9 168 aa20.31■□□□□ 0.84
VPS28-208ENST00000527797 KIR2DS3K7RE56 304 aa20.31■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms