RNA–Protein interactions for RNA: ENST00000523261.1

NKX3-1-202, Transcript of NK3 homeobox 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene NKX3-1, Length 713 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1-202ENST00000523261 RPA4Q13156 261 aa13.15□□□□□ -0.3
NKX3-1-202ENST00000523261 PIGHQ14442 188 aaPredicted RBP13.15□□□□□ -0.3
NKX3-1-202ENST00000523261 ZC3H12BQ5HYM0 836 aaKnown RBP13.15□□□□□ -0.3
NKX3-1-202ENST00000523261 SIRPB2Q5JXA9 342 aa13.15□□□□□ -0.3
NKX3-1-202ENST00000523261 FCRLBQ6BAA4 426 aa13.15□□□□□ -0.3
NKX3-1-202ENST00000523261 H3F3CQ6NXT2 135 aa13.15□□□□□ -0.3
NKX3-1-202ENST00000523261 ARSKQ6UWY0 536 aa13.15□□□□□ -0.3
NKX3-1-202ENST00000523261 GLT6D1Q7Z4J2 308 aa13.15□□□□□ -0.3
NKX3-1-202ENST00000523261 IRF2BP2Q7Z5L9 587 aa13.15□□□□□ -0.3
NKX3-1-202ENST00000523261 PHC2Q8IXK0 858 aa13.15□□□□□ -0.3
NKX3-1-202ENST00000523261 FAM98AQ8NCA5 519 aaKnown RBP13.15□□□□□ -0.3
NKX3-1-202ENST00000523261 DCUN1D1Q96GG9 259 aa13.15□□□□□ -0.3
NKX3-1-202ENST00000523261 ZNF354BQ96LW1 612 aa13.15□□□□□ -0.3
NKX3-1-202ENST00000523261 SELENOSQ9BQE4 189 aa13.15□□□□□ -0.3
NKX3-1-202ENST00000523261 UTP23Q9BRU9 249 aaKnown RBP13.15□□□□□ -0.3
NKX3-1-202ENST00000523261 ZNF670Q9BS34 389 aa13.15□□□□□ -0.3
NKX3-1-202ENST00000523261 TUBB6Q9BUF5 446 aa13.15□□□□□ -0.3
NKX3-1-202ENST00000523261 THAP2Q9H0W7 228 aa13.15□□□□□ -0.3
NKX3-1-202ENST00000523261 ASB8Q9H765 288 aa13.15□□□□□ -0.3
NKX3-1-202ENST00000523261 UBP1Q9NZI7 540 aa13.15□□□□□ -0.3
NKX3-1-202ENST00000523261 HACD3Q9P035 362 aa13.15□□□□□ -0.3
NKX3-1-202ENST00000523261 MYO1AQ9UBC5 1043 aa13.15□□□□□ -0.3
NKX3-1-202ENST00000523261 PLAGL1Q9UM63 463 aa13.15□□□□□ -0.3
NKX3-1-202ENST00000523261 A0A1B0GTH9 108 aa13.14□□□□□ -0.31
NKX3-1-202ENST00000523261 HYKKA2RU49 373 aa13.14□□□□□ -0.31
NKX3-1-202ENST00000523261 AGAP14A8MT82 685 aa13.14□□□□□ -0.31
NKX3-1-202ENST00000523261 RASGRF2O14827 1237 aa13.14□□□□□ -0.31
NKX3-1-202ENST00000523261 RALBP11234 206 aa13.14□□□□□ -0.31
NKX3-1-202ENST00000523261 FERP16591 822 aa13.14□□□□□ -0.31
NKX3-1-202ENST00000523261 FBLP22087 321 aaKnown RBP13.14□□□□□ -0.31
NKX3-1-202ENST00000523261 PPP2R2BQ00005 443 aa13.14□□□□□ -0.31
NKX3-1-202ENST00000523261 PMPCAQ10713 525 aa13.14□□□□□ -0.31
NKX3-1-202ENST00000523261 TMEM205Q6UW68 189 aa13.14□□□□□ -0.31
NKX3-1-202ENST00000523261 TBC1D21Q8IYX1 336 aa13.14□□□□□ -0.31
NKX3-1-202ENST00000523261 NIPA2Q8N8Q9 360 aa13.14□□□□□ -0.31
NKX3-1-202ENST00000523261 NEK11Q8NG66 645 aa13.14□□□□□ -0.31
NKX3-1-202ENST00000523261 BLOC1S5Q8TDH9 187 aa13.14□□□□□ -0.31
NKX3-1-202ENST00000523261 FAF2Q96CS3 445 aa13.14□□□□□ -0.31
NKX3-1-202ENST00000523261 TP63Q9H3D4 680 aaPredicted RBP13.14□□□□□ -0.31
NKX3-1-202ENST00000523261 GLOD4Q9HC38 313 aa13.14□□□□□ -0.31
NKX3-1-202ENST00000523261 MRPL47Q9HD33 250 aaKnown RBP13.14□□□□□ -0.31
NKX3-1-202ENST00000523261 NEUROD4Q9HD90 331 aa13.14□□□□□ -0.31
NKX3-1-202ENST00000523261 POLG2Q9UHN1 485 aa13.14□□□□□ -0.31
NKX3-1-202ENST00000523261 ASF1AQ9Y294 204 aa13.14□□□□□ -0.31
NKX3-1-202ENST00000523261 DNAJC13O75165 2243 aa13.14□□□□□ -0.31
NKX3-1-202ENST00000523261 A6NNC1 897 aa13.13□□□□□ -0.31
NKX3-1-202ENST00000523261 RNF212BA8MTL3 300 aa13.13□□□□□ -0.31
NKX3-1-202ENST00000523261 STX7O15400 261 aaKnown RBP13.13□□□□□ -0.31
NKX3-1-202ENST00000523261 NEURL1O76050 574 aa13.13□□□□□ -0.31
NKX3-1-202ENST00000523261 SRP72O76094 671 aaKnown RBP13.13□□□□□ -0.31
NKX3-1-202ENST00000523261 HEXBP07686 556 aa13.13□□□□□ -0.31
NKX3-1-202ENST00000523261 SP1P08047 785 aa13.13□□□□□ -0.31
NKX3-1-202ENST00000523261 GZMAP12544 262 aa13.13□□□□□ -0.31
NKX3-1-202ENST00000523261 ATP1B2P14415 290 aaPredicted RBP13.13□□□□□ -0.31
NKX3-1-202ENST00000523261 EFNA3P52797 238 aa13.13□□□□□ -0.31
NKX3-1-202ENST00000523261 WNT3AP56704 352 aa13.13□□□□□ -0.31
NKX3-1-202ENST00000523261 NUP107P57740 925 aa13.13□□□□□ -0.31
NKX3-1-202ENST00000523261 VSX2P58304 361 aaPredicted RBP13.13□□□□□ -0.31
NKX3-1-202ENST00000523261 KEAP1Q14145 624 aa13.13□□□□□ -0.31
NKX3-1-202ENST00000523261 FASTKQ14296 549 aaKnown RBP13.13□□□□□ -0.31
NKX3-1-202ENST00000523261 KRT31Q15323 416 aa13.13□□□□□ -0.31
NKX3-1-202ENST00000523261 WASHC2DQ5SRD0 308 aa13.13□□□□□ -0.31
NKX3-1-202ENST00000523261 FKBP15Q5T1M5 1219 aa13.13□□□□□ -0.31
NKX3-1-202ENST00000523261 ZNF449Q6P9G9 518 aa13.13□□□□□ -0.31
NKX3-1-202ENST00000523261 FIGLAQ6QHK4 219 aa13.13□□□□□ -0.31
NKX3-1-202ENST00000523261 CIARTQ8N365 385 aaPredicted RBP13.13□□□□□ -0.31
NKX3-1-202ENST00000523261 SLC25A41Q8N5S1 370 aa13.13□□□□□ -0.31
NKX3-1-202ENST00000523261 ZNF830Q96NB3 372 aaPredicted RBP13.13□□□□□ -0.31
NKX3-1-202ENST00000523261 NPAS2Q99743 824 aa13.13□□□□□ -0.31
NKX3-1-202ENST00000523261 OLFM1Q99784 485 aa13.13□□□□□ -0.31
NKX3-1-202ENST00000523261 C14orf105Q9NVL8 296 aa13.13□□□□□ -0.31
NKX3-1-202ENST00000523261 TDRKHQ9Y2W6 561 aaKnown RBP13.13□□□□□ -0.31
NKX3-1-202ENST00000523261 FFAR3O14843 346 aa13.12□□□□□ -0.31
NKX3-1-202ENST00000523261 GPR42O15529 346 aa13.12□□□□□ -0.31
NKX3-1-202ENST00000523261 MAN1A2O60476 641 aa13.12□□□□□ -0.31
NKX3-1-202ENST00000523261 CTSVO60911 334 aa13.12□□□□□ -0.31
NKX3-1-202ENST00000523261 EPOP01588 193 aa13.12□□□□□ -0.31
NKX3-1-202ENST00000523261 CCDC172P0C7W6 258 aa13.12□□□□□ -0.31
NKX3-1-202ENST00000523261 ACADLP28330 430 aa13.12□□□□□ -0.31
NKX3-1-202ENST00000523261 KIR2DL3P43628 341 aa13.12□□□□□ -0.31
NKX3-1-202ENST00000523261 NKX6-1P78426 367 aaPredicted RBP13.12□□□□□ -0.31
NKX3-1-202ENST00000523261 AP1B1Q10567 949 aa13.12□□□□□ -0.31
NKX3-1-202ENST00000523261 SNTB1Q13884 538 aaKnown RBP13.12□□□□□ -0.31
NKX3-1-202ENST00000523261 DPCR1Q3MIW9 517 aa13.12□□□□□ -0.31
NKX3-1-202ENST00000523261 EMC4Q5J8M3 183 aa13.12□□□□□ -0.31
NKX3-1-202ENST00000523261 SHEQ5VZ18 495 aa13.12□□□□□ -0.31
NKX3-1-202ENST00000523261 SLC25A25Q6KCM7 469 aa13.12□□□□□ -0.31
NKX3-1-202ENST00000523261 ACAD11Q709F0 780 aa13.12□□□□□ -0.31
NKX3-1-202ENST00000523261 CRLF3Q8IUI8 442 aa13.12□□□□□ -0.31
NKX3-1-202ENST00000523261 TMTC1Q8IUR5 882 aa13.12□□□□□ -0.31
NKX3-1-202ENST00000523261 LINC01555Q8NAE3 123 aa13.12□□□□□ -0.31
NKX3-1-202ENST00000523261 BTBD6Q96KE9 485 aa13.12□□□□□ -0.31
NKX3-1-202ENST00000523261 C10orf90Q96M02 699 aa13.12□□□□□ -0.31
NKX3-1-202ENST00000523261 LUC7LQ9NQ29 371 aaKnown RBP13.12□□□□□ -0.31
NKX3-1-202ENST00000523261 DMRT3Q9NQL9 472 aa13.12□□□□□ -0.31
NKX3-1-202ENST00000523261 CRIM1Q9NZV1 1036 aa13.12□□□□□ -0.31
NKX3-1-202ENST00000523261 STOX2Q9P2F5 926 aaPredicted RBP13.12□□□□□ -0.31
NKX3-1-202ENST00000523261 TRPC4Q9UBN4 977 aa13.12□□□□□ -0.31
NKX3-1-202ENST00000523261 FKBPLQ9UIM3 349 aa13.12□□□□□ -0.31
NKX3-1-202ENST00000523261 SONP18583 2426 aaKnown RBP13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms