RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 RXRGP48443 463 aa8.13□□□□□ -1.11
USP54-215ENST00000497106 SRP54P61011 504 aaKnown RBP8.13□□□□□ -1.11
USP54-215ENST00000497106 TBPL1P62380 186 aa8.13□□□□□ -1.11
USP54-215ENST00000497106 NFE2L1Q14494 772 aa8.13□□□□□ -1.11
USP54-215ENST00000497106 PHKG1Q16816 387 aa8.13□□□□□ -1.11
USP54-215ENST00000497106 TMEM207Q6UWW9 146 aa8.13□□□□□ -1.11
USP54-215ENST00000497106 MSANTD1Q6ZTZ1 278 aa8.13□□□□□ -1.11
USP54-215ENST00000497106 SAMD14Q8IZD0 417 aaPredicted RBP8.13□□□□□ -1.11
USP54-215ENST00000497106 TRPV3Q8NET8 790 aa8.13□□□□□ -1.11
USP54-215ENST00000497106 MAFAQ8NHW3 353 aaPredicted RBP8.13□□□□□ -1.11
USP54-215ENST00000497106 MAPK15Q8TD08 544 aa8.13□□□□□ -1.11
USP54-215ENST00000497106 SLC26A7Q8TE54 656 aa8.13□□□□□ -1.11
USP54-215ENST00000497106 ANKRD27Q96NW4 1050 aa8.13□□□□□ -1.11
USP54-215ENST00000497106 TBC1D17Q9HA65 648 aa8.13□□□□□ -1.11
USP54-215ENST00000497106 COPG1Q9Y678 874 aaKnown RBP8.13□□□□□ -1.11
USP54-215ENST00000497106 PLXNA4Q9HCM2 1894 aa8.13□□□□□ -1.11
USP54-215ENST00000497106 ATP6AP2A0A1C7CYW4 349 aa8.13□□□□□ -1.11
USP54-215ENST00000497106 GSAPA4D1B5 854 aa8.13□□□□□ -1.11
USP54-215ENST00000497106 ARHGEF33A8MVX0 844 aa8.13□□□□□ -1.11
USP54-215ENST00000497106 ATP6AP2O75787 350 aa8.13□□□□□ -1.11
USP54-215ENST00000497106 NDUFV2P19404 249 aa8.13□□□□□ -1.11
USP54-215ENST00000497106 IFNA8P32881 189 aa8.13□□□□□ -1.11
USP54-215ENST00000497106 GGT5P36269 586 aa8.13□□□□□ -1.11
USP54-215ENST00000497106 ARRB1P49407 418 aaPredicted RBP8.13□□□□□ -1.11
USP54-215ENST00000497106 TP53BP2Q13625 1128 aa8.13□□□□□ -1.11
USP54-215ENST00000497106 PTPRRQ15256 657 aa8.13□□□□□ -1.11
USP54-215ENST00000497106 NDUFA9Q16795 377 aa8.13□□□□□ -1.11
USP54-215ENST00000497106 CGB2Q6NT52 195 aa8.13□□□□□ -1.11
USP54-215ENST00000497106 HACD2Q6Y1H2 254 aa8.13□□□□□ -1.11
USP54-215ENST00000497106 RFLNAQ6ZTI6 216 aa8.13□□□□□ -1.11
USP54-215ENST00000497106 SDR16C5Q8N3Y7 309 aa8.13□□□□□ -1.11
USP54-215ENST00000497106 PPWD1Q96BP3 646 aaKnown RBP8.13□□□□□ -1.11
USP54-215ENST00000497106 RCN3Q96D15 328 aa8.13□□□□□ -1.11
USP54-215ENST00000497106 MTFMTQ96DP5 389 aaKnown RBP8.13□□□□□ -1.11
USP54-215ENST00000497106 KCTD14Q9BQ13 255 aaPredicted RBP8.13□□□□□ -1.11
USP54-215ENST00000497106 SPATA6Q9NWH7 488 aaPredicted RBP8.13□□□□□ -1.11
USP54-215ENST00000497106 OR1A2Q9Y585 309 aa8.13□□□□□ -1.11
USP54-215ENST00000497106 KIAA1671Q9BY89 1806 aa8.12□□□□□ -1.11
USP54-215ENST00000497106 ANKRD65E5RJM6 399 aa8.12□□□□□ -1.11
USP54-215ENST00000497106 GAPDHSO14556 408 aaPredicted RBP8.12□□□□□ -1.11
USP54-215ENST00000497106 EPN2O95208 641 aa8.12□□□□□ -1.11
USP54-215ENST00000497106 THEGLP0DJG4 465 aa8.12□□□□□ -1.11
USP54-215ENST00000497106 HNRNPKP61978 463 aaKnown RBP eCLIP8.12□□□□□ -1.11
USP54-215ENST00000497106 NXPE4Q6UWF7 544 aa8.12□□□□□ -1.11
USP54-215ENST00000497106 ANGPTL8Q6UXH0 198 aa8.12□□□□□ -1.11
USP54-215ENST00000497106 PARGQ86W56 976 aa8.12□□□□□ -1.11
USP54-215ENST00000497106 CCDC124Q96CT7 223 aaKnown RBP8.12□□□□□ -1.11
USP54-215ENST00000497106 THAP11Q96EK4 314 aa8.12□□□□□ -1.11
USP54-215ENST00000497106 ZNF395Q9H8N7 513 aaPredicted RBP8.12□□□□□ -1.11
USP54-215ENST00000497106 CLCA2Q9UQC9 943 aa8.12□□□□□ -1.11
USP54-215ENST00000497106 ENTPD4Q9Y227 616 aa8.12□□□□□ -1.11
USP54-215ENST00000497106 FAM221BA6H8Z2 402 aa8.12□□□□□ -1.11
USP54-215ENST00000497106 GSC2O15499 205 aa8.12□□□□□ -1.11
USP54-215ENST00000497106 MATN4O95460 622 aa8.12□□□□□ -1.11
USP54-215ENST00000497106 SLC35G6P0C7Q6 338 aa8.12□□□□□ -1.11
USP54-215ENST00000497106 LTBRP36941 435 aa8.12□□□□□ -1.11
USP54-215ENST00000497106 NME5P56597 212 aa8.12□□□□□ -1.11
USP54-215ENST00000497106 SH3BP2P78314 561 aa8.12□□□□□ -1.11
USP54-215ENST00000497106 RIPK1Q13546 671 aa8.12□□□□□ -1.11
USP54-215ENST00000497106 GAB4Q2WGN9 574 aa8.12□□□□□ -1.11
USP54-215ENST00000497106 ATG9BQ674R7 924 aa8.12□□□□□ -1.11
USP54-215ENST00000497106 NAIF1Q69YI7 327 aaPredicted RBP8.12□□□□□ -1.11
USP54-215ENST00000497106 REP15Q6BDI9 236 aa8.12□□□□□ -1.11
USP54-215ENST00000497106 AAGABQ6PD74 315 aa8.12□□□□□ -1.11
USP54-215ENST00000497106 BHLHB9Q6PI77 547 aa8.12□□□□□ -1.11
USP54-215ENST00000497106 OR5K2Q8NHB8 316 aa8.12□□□□□ -1.11
USP54-215ENST00000497106 ESAMQ96AP7 390 aa8.12□□□□□ -1.11
USP54-215ENST00000497106 MIEF2Q96C03 454 aa8.12□□□□□ -1.11
USP54-215ENST00000497106 FAM120BQ96EK7 910 aaKnown RBP8.12□□□□□ -1.11
USP54-215ENST00000497106 C1orf50Q9BV19 199 aa8.12□□□□□ -1.11
USP54-215ENST00000497106 THUMPD3Q9BV44 507 aaKnown RBP8.12□□□□□ -1.11
USP54-215ENST00000497106 TTYH1Q9H313 450 aaPredicted RBP8.12□□□□□ -1.11
USP54-215ENST00000497106 ADAMTS6Q9UKP5 1117 aa8.12□□□□□ -1.11
USP54-215ENST00000497106 RNF11Q9Y3C5 154 aa8.12□□□□□ -1.11
USP54-215ENST00000497106 C5orf58C9J3I9 102 aa8.12□□□□□ -1.11
USP54-215ENST00000497106 E2F3O00716 465 aa8.12□□□□□ -1.11
USP54-215ENST00000497106 NRG2O14511 850 aaPredicted RBP8.12□□□□□ -1.11
USP54-215ENST00000497106 WISP3O95389 354 aaPredicted RBP8.12□□□□□ -1.11
USP54-215ENST00000497106 KRT75O95678 551 aa8.12□□□□□ -1.11
USP54-215ENST00000497106 PSMA4P25789 261 aaKnown RBP8.12□□□□□ -1.11
USP54-215ENST00000497106 CD27P26842 260 aa8.12□□□□□ -1.11
USP54-215ENST00000497106 PIK3CBP42338 1070 aa8.12□□□□□ -1.11
USP54-215ENST00000497106 KIR3DL1P43629 444 aa8.12□□□□□ -1.11
USP54-215ENST00000497106 DMPKQ09013 629 aa8.12□□□□□ -1.11
USP54-215ENST00000497106 CAPRIN1Q14444 709 aaKnown RBP8.12□□□□□ -1.11
USP54-215ENST00000497106 TCEA2Q15560 299 aa8.12□□□□□ -1.11
USP54-215ENST00000497106 SCIMPQ6UWF3 145 aa8.12□□□□□ -1.11
USP54-215ENST00000497106 TMIGD1Q6UXZ0 262 aa8.12□□□□□ -1.11
USP54-215ENST00000497106 RNF165Q6ZSG1 346 aa8.12□□□□□ -1.11
USP54-215ENST00000497106 NUDT13Q86X67 352 aa8.12□□□□□ -1.11
USP54-215ENST00000497106 C7orf57Q8NEG2 295 aa8.12□□□□□ -1.11
USP54-215ENST00000497106 EID2BQ96D98 161 aa8.12□□□□□ -1.11
USP54-215ENST00000497106 APOLD1Q96LR9 279 aa8.12□□□□□ -1.11
USP54-215ENST00000497106 SLC30A3Q99726 388 aa8.12□□□□□ -1.11
USP54-215ENST00000497106 KCNK13Q9HB14 408 aa8.12□□□□□ -1.11
USP54-215ENST00000497106 TMEM184CQ9NVA4 438 aa8.12□□□□□ -1.11
USP54-215ENST00000497106 AIG1Q9NVV5 245 aa8.12□□□□□ -1.11
USP54-215ENST00000497106 SLC13A4Q9UKG4 626 aa8.12□□□□□ -1.11
USP54-215ENST00000497106 VPS4AQ9UN37 437 aa8.12□□□□□ -1.11
USP54-215ENST00000497106 SIT1Q9Y3P8 196 aa8.12□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 141.9 ms