RNA–Protein interactions for RNA: ENST00000495100.1

GPC1-209, Transcript of glypican 1, humanhuman

TSL 1 (best)

Gene GPC1, Length 3,525 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-209ENST00000495100 LMCD1Q9NZU5 365 aa13.1□□□□□ -0.31
GPC1-209ENST00000495100 WASH3PC4AMC7 463 aa13.09□□□□□ -0.31
GPC1-209ENST00000495100 ZNF197O14709 1029 aa13.09□□□□□ -0.31
GPC1-209ENST00000495100 LSM1O15116 133 aaKnown RBP13.09□□□□□ -0.31
GPC1-209ENST00000495100 CACNG3O60359 315 aa13.09□□□□□ -0.31
GPC1-209ENST00000495100 CDH1P12830 882 aa13.09□□□□□ -0.31
GPC1-209ENST00000495100 TMED10P49755 219 aaKnown RBP13.09□□□□□ -0.31
GPC1-209ENST00000495100 CTBSQ01459 385 aa13.09□□□□□ -0.31
GPC1-209ENST00000495100 SPIBQ01892 262 aa13.09□□□□□ -0.31
GPC1-209ENST00000495100 NPTX1Q15818 432 aa13.09□□□□□ -0.31
GPC1-209ENST00000495100 CXorf57Q6NSI4 855 aaKnown RBP13.09□□□□□ -0.31
GPC1-209ENST00000495100 SNX20Q7Z614 316 aa13.09□□□□□ -0.31
GPC1-209ENST00000495100 HIPK1Q86Z02 1210 aa13.09□□□□□ -0.31
GPC1-209ENST00000495100 HOMEZQ8IX15 550 aa13.09□□□□□ -0.31
GPC1-209ENST00000495100 ANKFN1Q8N957 763 aa13.09□□□□□ -0.31
GPC1-209ENST00000495100 HPS1Q92902 700 aa13.09□□□□□ -0.31
GPC1-209ENST00000495100 ZNF583Q96ND8 569 aa13.09□□□□□ -0.31
GPC1-209ENST00000495100 ZNF558Q96NG5 402 aa13.09□□□□□ -0.31
GPC1-209ENST00000495100 CASD1Q96PB1 797 aa13.09□□□□□ -0.31
GPC1-209ENST00000495100 ACPTQ9BZG2 426 aa13.09□□□□□ -0.31
GPC1-209ENST00000495100 MIEF1Q9NQG6 463 aa13.09□□□□□ -0.31
GPC1-209ENST00000495100 DNMT3AQ9Y6K1 912 aaPredicted RBP13.09□□□□□ -0.31
GPC1-209ENST00000495100 MIA3Q5JRA6 1907 aa13.09□□□□□ -0.31
GPC1-209ENST00000495100 LCKP06239 509 aa13.09□□□□□ -0.31
GPC1-209ENST00000495100 C8AP07357 584 aa13.09□□□□□ -0.31
GPC1-209ENST00000495100 ENO2P09104 434 aaPredicted RBP13.09□□□□□ -0.31
GPC1-209ENST00000495100 GSTM1P09488 218 aa13.09□□□□□ -0.31
GPC1-209ENST00000495100 HOXC13P31276 330 aa13.09□□□□□ -0.31
GPC1-209ENST00000495100 HMGCLP35914 325 aa13.09□□□□□ -0.31
GPC1-209ENST00000495100 NKX2-5P52952 324 aaPredicted RBP13.09□□□□□ -0.31
GPC1-209ENST00000495100 DEFB103AP81534 67 aa13.09□□□□□ -0.31
GPC1-209ENST00000495100 TRIM60Q495X7 471 aa13.09□□□□□ -0.31
GPC1-209ENST00000495100 RAET1GQ6H3X3 334 aa13.09□□□□□ -0.31
GPC1-209ENST00000495100 LCN8Q6JVE9 175 aa13.09□□□□□ -0.31
GPC1-209ENST00000495100 STX19Q8N4C7 294 aa13.09□□□□□ -0.31
GPC1-209ENST00000495100 TTC29Q8NA56 475 aaPredicted RBP13.09□□□□□ -0.31
GPC1-209ENST00000495100 PLEKHA8Q96JA3 519 aa13.09□□□□□ -0.31
GPC1-209ENST00000495100 PKP4Q99569 1192 aa13.09□□□□□ -0.31
GPC1-209ENST00000495100 P2RY13Q9BPV8 354 aa13.09□□□□□ -0.31
GPC1-209ENST00000495100 TSEN34Q9BSV6 310 aaKnown RBP13.09□□□□□ -0.31
GPC1-209ENST00000495100 MCMBPQ9BTE3 642 aa13.09□□□□□ -0.31
GPC1-209ENST00000495100 FUNDC2Q9BWH2 189 aa13.09□□□□□ -0.31
GPC1-209ENST00000495100 MRGBPQ9NV56 204 aa13.09□□□□□ -0.31
GPC1-209ENST00000495100 HSFX1Q9UBD0 423 aa13.09□□□□□ -0.31
GPC1-209ENST00000495100 SLC25A13Q9UJS0 675 aa13.09□□□□□ -0.31
GPC1-209ENST00000495100 SNX6Q9UNH7 406 aa13.09□□□□□ -0.31
GPC1-209ENST00000495100 TEX28O15482 410 aa13.09□□□□□ -0.31
GPC1-209ENST00000495100 TAPBPO15533 448 aa13.09□□□□□ -0.31
GPC1-209ENST00000495100 TSPAN12O95859 305 aa13.09□□□□□ -0.31
GPC1-209ENST00000495100 EPOP01588 193 aa13.09□□□□□ -0.31
GPC1-209ENST00000495100 FGF4P08620 206 aa13.09□□□□□ -0.31
GPC1-209ENST00000495100 LAMP1P11279 417 aa13.09□□□□□ -0.31
GPC1-209ENST00000495100 JAK1P23458 1154 aa13.09□□□□□ -0.31
GPC1-209ENST00000495100 FEN1P39748 380 aaKnown RBP13.09□□□□□ -0.31
GPC1-209ENST00000495100 TXNL4AP83876 142 aaKnown RBP13.09□□□□□ -0.31
GPC1-209ENST00000495100 EMX2Q04743 252 aa13.09□□□□□ -0.31
GPC1-209ENST00000495100 DBPQ10586 325 aaPredicted RBP13.09□□□□□ -0.31
GPC1-209ENST00000495100 SLC13A2Q13183 592 aa13.09□□□□□ -0.31
GPC1-209ENST00000495100 SLC14A1Q13336 389 aa13.09□□□□□ -0.31
GPC1-209ENST00000495100 MYBPC3Q14896 1274 aa13.09□□□□□ -0.31
GPC1-209ENST00000495100 RUNDC3AQ59EK9 446 aa13.09□□□□□ -0.31
GPC1-209ENST00000495100 TMEM220Q6QAJ8 160 aa13.09□□□□□ -0.31
GPC1-209ENST00000495100 PROSER1Q86XN7 944 aa13.09□□□□□ -0.31
GPC1-209ENST00000495100 RAB8BQ92930 207 aa13.09□□□□□ -0.31
GPC1-209ENST00000495100 TCEAL4Q96EI5 215 aa13.09□□□□□ -0.31
GPC1-209ENST00000495100 ZNF382Q96SR6 550 aa13.09□□□□□ -0.31
GPC1-209ENST00000495100 Q9Y3F1 56 aa13.09□□□□□ -0.31
GPC1-209ENST00000495100 PCDHGA11Q9Y5H2 935 aa13.09□□□□□ -0.31
GPC1-209ENST00000495100 PARP14Q460N5 1801 aa13.08□□□□□ -0.31
GPC1-209ENST00000495100 DRGXA6NNA5 263 aa13.08□□□□□ -0.32
GPC1-209ENST00000495100 PSMD11O00231 422 aa13.08□□□□□ -0.32
GPC1-209ENST00000495100 TFECO14948 347 aaPredicted RBP13.08□□□□□ -0.32
GPC1-209ENST00000495100 TBX1O43435 398 aa13.08□□□□□ -0.32
GPC1-209ENST00000495100 TSPAN6O43657 245 aa13.08□□□□□ -0.32
GPC1-209ENST00000495100 EEDO75530 441 aaKnown RBP13.08□□□□□ -0.32
GPC1-209ENST00000495100 HSD17B1P14061 328 aa13.08□□□□□ -0.32
GPC1-209ENST00000495100 CYP2A7P20853 494 aa13.08□□□□□ -0.32
GPC1-209ENST00000495100 ALDH3A2P51648 485 aa13.08□□□□□ -0.32
GPC1-209ENST00000495100 PLA2G16P53816 162 aa13.08□□□□□ -0.32
GPC1-209ENST00000495100 ATP6AP1Q15904 470 aa13.08□□□□□ -0.32
GPC1-209ENST00000495100 ZSWIM9Q86XI8 627 aa13.08□□□□□ -0.32
GPC1-209ENST00000495100 NXPE1Q8N323 547 aa13.08□□□□□ -0.32
GPC1-209ENST00000495100 STON2Q8WXE9 905 aa13.08□□□□□ -0.32
GPC1-209ENST00000495100 FOPNLQ96NB1 174 aa13.08□□□□□ -0.32
GPC1-209ENST00000495100 DDX28Q9NUL7 540 aaKnown RBP13.08□□□□□ -0.32
GPC1-209ENST00000495100 FAM118AQ9NWS6 357 aa13.08□□□□□ -0.32
GPC1-209ENST00000495100 TMCO1Q9UM00 188 aa13.08□□□□□ -0.32
GPC1-209ENST00000495100 CORINQ9Y5Q5 1042 aa13.08□□□□□ -0.32
GPC1-209ENST00000495100 FAM186AA6NE01 2351 aa13.08□□□□□ -0.32
GPC1-209ENST00000495100 C5orf58C9J3I9 102 aa13.08□□□□□ -0.32
GPC1-209ENST00000495100 FAM227AF5H4B4 570 aa13.08□□□□□ -0.32
GPC1-209ENST00000495100 ERAL1O75616 437 aaKnown RBP13.08□□□□□ -0.32
GPC1-209ENST00000495100 HOXB8P17481 243 aaPredicted RBP13.08□□□□□ -0.32
GPC1-209ENST00000495100 PDHA2P29803 388 aa13.08□□□□□ -0.32
GPC1-209ENST00000495100 CLCN7P51798 805 aa13.08□□□□□ -0.32
GPC1-209ENST00000495100 EEFSECP57772 596 aaKnown RBP13.08□□□□□ -0.32
GPC1-209ENST00000495100 SPCS2Q15005 226 aa13.08□□□□□ -0.32
GPC1-209ENST00000495100 PLEKHG6Q3KR16 790 aa13.08□□□□□ -0.32
GPC1-209ENST00000495100 SLC36A3Q495N2 470 aa13.08□□□□□ -0.32
GPC1-209ENST00000495100 NCEH1Q6PIU2 408 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms